data_5EM4 # _model_server_result.job_id Ayuy2juxq58oRX3PvY1IgQ _model_server_result.datetime_utc '2024-11-24 00:43:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5em4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 5EM4 # _exptl.entry_id 5EM4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 494.573 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5EM4 _cell.length_a 92.03 _cell.length_b 92.03 _cell.length_c 151.85 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EM4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 436 A CYS 436 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc2 B SG CYS 436 B CYS 436 1_555 F FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? # _chem_comp.formula 'C23 H42 O11' _chem_comp.formula_weight 494.573 _chem_comp.id CM5 _chem_comp.mon_nstd_flag . _chem_comp.name 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5-CYCLOHEXYLPENTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE;CYMAL-5' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 CM5 sing 70 n n C7 C6 CM5 sing 71 n n C7 H71 CM5 sing 72 n n C7 H72 CM5 sing 73 n n C8 C9 CM5 sing 74 n n C8 H81 CM5 sing 75 n n C8 H82 CM5 sing 76 n n C9 C10 CM5 sing 77 n n C9 H91 CM5 sing 78 n n C9 H92 CM5 sing 79 n n C10 C11 CM5 sing 80 n n C10 H101 CM5 sing 81 n n C10 H102 CM5 sing 82 n n C11 C6 CM5 sing 83 n n C11 H111 CM5 sing 84 n n C11 H112 CM5 sing 85 n n C6 C5 CM5 sing 86 n n C6 H6 CM5 sing 87 n n C5 C4 CM5 sing 88 n n C5 H51 CM5 sing 89 n n C5 H52 CM5 sing 90 n n C4 C3 CM5 sing 91 n n C4 H41 CM5 sing 92 n n C4 H42 CM5 sing 93 n n C3 C2 CM5 sing 94 n n C3 H31A CM5 sing 95 n n C3 H32A CM5 sing 96 n n C2 C1 CM5 sing 97 n n C2 H21A CM5 sing 98 n n C2 H22A CM5 sing 99 n n C1 O12 CM5 sing 100 n n C1 H11 CM5 sing 101 n n C1 H12 CM5 sing 102 n n O12 C13 CM5 sing 103 n n C13 C18 CM5 sing 104 n n C13 O14 CM5 sing 105 n n C13 H13 CM5 sing 106 n n C18 O22 CM5 sing 107 n n C18 C17 CM5 sing 108 n n C18 H18 CM5 sing 109 n n O22 H22 CM5 sing 110 n n C17 O21 CM5 sing 111 n n C17 C16 CM5 sing 112 n n C17 H17 CM5 sing 113 n n O21 H21 CM5 sing 114 n n O14 C15 CM5 sing 115 n n C15 C19 CM5 sing 116 n n C15 C16 CM5 sing 117 n n C15 H15 CM5 sing 118 n n C19 O20 CM5 sing 119 n n C19 H191 CM5 sing 120 n n C19 H192 CM5 sing 121 n n O20 H20 CM5 sing 122 n n C16 O23 CM5 sing 123 n n C16 H16 CM5 sing 124 n n O23 C24 CM5 sing 125 n n C24 O25 CM5 sing 126 n n C24 C29 CM5 sing 127 n n C24 H24 CM5 sing 128 n n O25 C26 CM5 sing 129 n n C26 C30 CM5 sing 130 n n C26 C27 CM5 sing 131 n n C26 H26 CM5 sing 132 n n C30 O31 CM5 sing 133 n n C30 H301 CM5 sing 134 n n C30 H302 CM5 sing 135 n n O31 H31 CM5 sing 136 n n C27 O32 CM5 sing 137 n n C27 C28 CM5 sing 138 n n C27 H27 CM5 sing 139 n n O32 H32 CM5 sing 140 n n C28 O33 CM5 sing 141 n n C28 C29 CM5 sing 142 n n C28 H28 CM5 sing 143 n n O33 H33 CM5 sing 144 n n C29 O34 CM5 sing 145 n n C29 H29 CM5 sing 146 n n O34 H34 CM5 sing 147 n n # _atom_sites.entry_id 5EM4 _atom_sites.fract_transf_matrix[1][1] 0.010866 _atom_sites.fract_transf_matrix[1][2] 0.006274 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006585 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 501 HEM HEM . D 3 CM5 A 1 502 502 CM5 CM5 . E 3 CM5 A 1 503 503 CM5 CM5 . F 2 HEM B 1 501 501 HEM HEM . G 3 CM5 B 1 502 502 CM5 CM5 . H 3 CM5 B 1 503 503 CM5 CM5 . I 4 HOH A 1 601 601 HOH HOH . I 4 HOH A 2 602 602 HOH HOH . I 4 HOH A 3 603 603 HOH HOH . J 4 HOH B 1 601 601 HOH HOH . J 4 HOH B 2 602 602 HOH HOH . J 4 HOH B 3 603 603 HOH HOH . J 4 HOH B 4 604 604 HOH HOH . J 4 HOH B 5 605 605 HOH HOH . J 4 HOH B 6 606 606 HOH HOH . J 4 HOH B 7 607 607 HOH HOH . J 4 HOH B 8 608 608 HOH HOH . J 4 HOH B 9 609 609 HOH HOH . J 4 HOH B 10 610 610 HOH HOH . J 4 HOH B 11 611 611 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 CM5 . . . D 3 -34.25 85.013 39.592 1 82.83 ? C7 CM5 502 A 1 HETATM 2 C C8 CM5 . . . D 3 -33.267 84.892 38.39 1 84.06 ? C8 CM5 502 A 1 HETATM 3 C C9 CM5 . . . D 3 -33.74 84.007 37.209 1 81.62 ? C9 CM5 502 A 1 HETATM 4 C C10 CM5 . . . D 3 -35.203 84.289 36.843 1 78.18 ? C10 CM5 502 A 1 HETATM 5 C C11 CM5 . . . D 3 -36.072 84.151 38.098 1 78.18 ? C11 CM5 502 A 1 HETATM 6 C C6 CM5 . . . D 3 -35.716 85.209 39.153 1 80.95 ? C6 CM5 502 A 1 HETATM 7 C C5 CM5 . . . D 3 -36.737 85.167 40.341 1 91.41 ? C5 CM5 502 A 1 HETATM 8 C C4 CM5 . . . D 3 -37.574 86.49 40.324 1 105.5 ? C4 CM5 502 A 1 HETATM 9 C C3 CM5 . . . D 3 -38.966 86.463 40.962 1 122.16 ? C3 CM5 502 A 1 HETATM 10 C C2 CM5 . . . D 3 -39.543 87.896 41.021 1 132.56 ? C2 CM5 502 A 1 HETATM 11 C C1 CM5 . . . D 3 -40.999 87.888 41.448 1 140.8 ? C1 CM5 502 A 1 HETATM 12 O O12 CM5 . . . D 3 -41.003 87.719 42.798 1 145.46 ? O12 CM5 502 A 1 HETATM 13 C C13 CM5 . . . D 3 -42.134 88.007 43.657 1 137.88 ? C13 CM5 502 A 1 HETATM 14 C C18 CM5 . . . D 3 -42.161 87.291 45.067 1 127.02 ? C18 CM5 502 A 1 HETATM 15 O O22 CM5 . . . D 3 -42.441 85.929 44.786 1 105.12 ? O22 CM5 502 A 1 HETATM 16 C C17 CM5 . . . D 3 -43.54 87.622 45.55 1 137.12 ? C17 CM5 502 A 1 HETATM 17 O O21 CM5 . . . D 3 -43.018 87.329 46.925 1 135.9 ? O21 CM5 502 A 1 HETATM 18 O O14 CM5 . . . D 3 -42.048 89.485 43.89 1 150.9 ? O14 CM5 502 A 1 HETATM 19 C C15 CM5 . . . D 3 -43.404 89.818 44.304 1 139.56 ? C15 CM5 502 A 1 HETATM 20 C C19 CM5 . . . D 3 -43.732 91.334 44.159 1 129.95 ? C19 CM5 502 A 1 HETATM 21 O O20 CM5 . . . D 3 -43.107 92.108 45.194 1 111.37 ? O20 CM5 502 A 1 HETATM 22 C C16 CM5 . . . D 3 -43.641 89.246 45.722 1 144.82 ? C16 CM5 502 A 1 HETATM 23 O O23 CM5 . . . D 3 -44.921 88.537 45.656 1 152.18 ? O23 CM5 502 A 1 HETATM 24 C C24 CM5 . . . D 3 -45.932 89.03 46.584 1 152.18 ? C24 CM5 502 A 1 HETATM 25 O O25 CM5 . . . D 3 -45.404 89.284 47.886 1 137.87 ? O25 CM5 502 A 1 HETATM 26 C C26 CM5 . . . D 3 -46.322 89.837 48.834 1 131.94 ? C26 CM5 502 A 1 HETATM 27 C C30 CM5 . . . D 3 -46.534 88.837 49.964 1 126.31 ? C30 CM5 502 A 1 HETATM 28 O O31 CM5 . . . D 3 -47.037 89.518 51.121 1 138.31 ? O31 CM5 502 A 1 HETATM 29 C C27 CM5 . . . D 3 -47.648 90.204 48.178 1 137.5 ? C27 CM5 502 A 1 HETATM 30 O O32 CM5 . . . D 3 -48.443 90.953 49.105 1 143.69 ? O32 CM5 502 A 1 HETATM 31 C C28 CM5 . . . D 3 -47.411 91.042 46.931 1 135.96 ? C28 CM5 502 A 1 HETATM 32 O O33 CM5 . . . D 3 -48.662 91.324 46.291 1 112.71 ? O33 CM5 502 A 1 HETATM 33 C C29 CM5 . . . D 3 -46.491 90.308 45.966 1 141.47 ? C29 CM5 502 A 1 HETATM 34 O O34 CM5 . . . D 3 -45.405 91.167 45.597 1 144.11 ? O34 CM5 502 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 34 #