data_5EM4 # _model_server_result.job_id EBna69Q00LqBXX4glVKEEQ _model_server_result.datetime_utc '2024-11-24 00:52:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5em4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":502}' # _entry.id 5EM4 # _exptl.entry_id 5EM4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 494.573 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5EM4 _cell.length_a 92.03 _cell.length_b 92.03 _cell.length_c 151.85 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EM4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 436 A CYS 436 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc2 B SG CYS 436 B CYS 436 1_555 F FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? # _chem_comp.formula 'C23 H42 O11' _chem_comp.formula_weight 494.573 _chem_comp.id CM5 _chem_comp.mon_nstd_flag . _chem_comp.name 5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5-CYCLOHEXYLPENTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE;CYMAL-5' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 CM5 sing 70 n n C7 C6 CM5 sing 71 n n C7 H71 CM5 sing 72 n n C7 H72 CM5 sing 73 n n C8 C9 CM5 sing 74 n n C8 H81 CM5 sing 75 n n C8 H82 CM5 sing 76 n n C9 C10 CM5 sing 77 n n C9 H91 CM5 sing 78 n n C9 H92 CM5 sing 79 n n C10 C11 CM5 sing 80 n n C10 H101 CM5 sing 81 n n C10 H102 CM5 sing 82 n n C11 C6 CM5 sing 83 n n C11 H111 CM5 sing 84 n n C11 H112 CM5 sing 85 n n C6 C5 CM5 sing 86 n n C6 H6 CM5 sing 87 n n C5 C4 CM5 sing 88 n n C5 H51 CM5 sing 89 n n C5 H52 CM5 sing 90 n n C4 C3 CM5 sing 91 n n C4 H41 CM5 sing 92 n n C4 H42 CM5 sing 93 n n C3 C2 CM5 sing 94 n n C3 H31A CM5 sing 95 n n C3 H32A CM5 sing 96 n n C2 C1 CM5 sing 97 n n C2 H21A CM5 sing 98 n n C2 H22A CM5 sing 99 n n C1 O12 CM5 sing 100 n n C1 H11 CM5 sing 101 n n C1 H12 CM5 sing 102 n n O12 C13 CM5 sing 103 n n C13 C18 CM5 sing 104 n n C13 O14 CM5 sing 105 n n C13 H13 CM5 sing 106 n n C18 O22 CM5 sing 107 n n C18 C17 CM5 sing 108 n n C18 H18 CM5 sing 109 n n O22 H22 CM5 sing 110 n n C17 O21 CM5 sing 111 n n C17 C16 CM5 sing 112 n n C17 H17 CM5 sing 113 n n O21 H21 CM5 sing 114 n n O14 C15 CM5 sing 115 n n C15 C19 CM5 sing 116 n n C15 C16 CM5 sing 117 n n C15 H15 CM5 sing 118 n n C19 O20 CM5 sing 119 n n C19 H191 CM5 sing 120 n n C19 H192 CM5 sing 121 n n O20 H20 CM5 sing 122 n n C16 O23 CM5 sing 123 n n C16 H16 CM5 sing 124 n n O23 C24 CM5 sing 125 n n C24 O25 CM5 sing 126 n n C24 C29 CM5 sing 127 n n C24 H24 CM5 sing 128 n n O25 C26 CM5 sing 129 n n C26 C30 CM5 sing 130 n n C26 C27 CM5 sing 131 n n C26 H26 CM5 sing 132 n n C30 O31 CM5 sing 133 n n C30 H301 CM5 sing 134 n n C30 H302 CM5 sing 135 n n O31 H31 CM5 sing 136 n n C27 O32 CM5 sing 137 n n C27 C28 CM5 sing 138 n n C27 H27 CM5 sing 139 n n O32 H32 CM5 sing 140 n n C28 O33 CM5 sing 141 n n C28 C29 CM5 sing 142 n n C28 H28 CM5 sing 143 n n O33 H33 CM5 sing 144 n n C29 O34 CM5 sing 145 n n C29 H29 CM5 sing 146 n n O34 H34 CM5 sing 147 n n # _atom_sites.entry_id 5EM4 _atom_sites.fract_transf_matrix[1][1] 0.010866 _atom_sites.fract_transf_matrix[1][2] 0.006274 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006585 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 501 HEM HEM . D 3 CM5 A 1 502 502 CM5 CM5 . E 3 CM5 A 1 503 503 CM5 CM5 . F 2 HEM B 1 501 501 HEM HEM . G 3 CM5 B 1 502 502 CM5 CM5 . H 3 CM5 B 1 503 503 CM5 CM5 . I 4 HOH A 1 601 601 HOH HOH . I 4 HOH A 2 602 602 HOH HOH . I 4 HOH A 3 603 603 HOH HOH . J 4 HOH B 1 601 601 HOH HOH . J 4 HOH B 2 602 602 HOH HOH . J 4 HOH B 3 603 603 HOH HOH . J 4 HOH B 4 604 604 HOH HOH . J 4 HOH B 5 605 605 HOH HOH . J 4 HOH B 6 606 606 HOH HOH . J 4 HOH B 7 607 607 HOH HOH . J 4 HOH B 8 608 608 HOH HOH . J 4 HOH B 9 609 609 HOH HOH . J 4 HOH B 10 610 610 HOH HOH . J 4 HOH B 11 611 611 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 CM5 . . . G 3 -23.345 25.786 31.792 1 108.85 ? C7 CM5 502 B 1 HETATM 2 C C8 CM5 . . . G 3 -22.313 26.553 30.965 1 103.74 ? C8 CM5 502 B 1 HETATM 3 C C9 CM5 . . . G 3 -22.521 26.343 29.47 1 96.19 ? C9 CM5 502 B 1 HETATM 4 C C10 CM5 . . . G 3 -24 26.246 29.109 1 97.6 ? C10 CM5 502 B 1 HETATM 5 C C11 CM5 . . . G 3 -24.976 26.792 30.165 1 101.02 ? C11 CM5 502 B 1 HETATM 6 C C6 CM5 . . . G 3 -24.781 26.304 31.616 1 106.52 ? C6 CM5 502 B 1 HETATM 7 C C5 CM5 . . . G 3 -25.862 25.278 32.083 1 102.6 ? C5 CM5 502 B 1 HETATM 8 C C4 CM5 . . . G 3 -25.591 24.732 33.5 1 103.93 ? C4 CM5 502 B 1 HETATM 9 C C3 CM5 . . . G 3 -26.808 24.434 34.387 1 106.35 ? C3 CM5 502 B 1 HETATM 10 C C2 CM5 . . . G 3 -26.415 23.493 35.547 1 109.76 ? C2 CM5 502 B 1 HETATM 11 C C1 CM5 . . . G 3 -27.54 23.251 36.563 1 113.84 ? C1 CM5 502 B 1 HETATM 12 O O12 CM5 . . . G 3 -27.033 23.002 37.881 1 127.5 ? O12 CM5 502 B 1 HETATM 13 C C13 CM5 . . . G 3 -26.313 21.776 38.103 1 131.32 ? C13 CM5 502 B 1 HETATM 14 C C18 CM5 . . . G 3 -25.769 21.832 39.565 1 136.86 ? C18 CM5 502 B 1 HETATM 15 O O22 CM5 . . . G 3 -24.415 22.323 39.577 1 121.68 ? O22 CM5 502 B 1 HETATM 16 C C17 CM5 . . . G 3 -25.796 20.515 40.346 1 143.04 ? C17 CM5 502 B 1 HETATM 17 O O21 CM5 . . . G 3 -25.911 20.762 41.75 1 141.85 ? O21 CM5 502 B 1 HETATM 18 O O14 CM5 . . . G 3 -27.199 20.686 37.752 1 124.9 ? O14 CM5 502 B 1 HETATM 19 C C15 CM5 . . . G 3 -26.869 19.422 38.325 1 136.36 ? C15 CM5 502 B 1 HETATM 20 C C19 CM5 . . . G 3 -27.798 18.289 37.882 1 129.66 ? C19 CM5 502 B 1 HETATM 21 O O20 CM5 . . . G 3 -28.979 18.854 37.307 1 113.18 ? O20 CM5 502 B 1 HETATM 22 C C16 CM5 . . . G 3 -26.753 19.481 39.849 1 147.96 ? C16 CM5 502 B 1 HETATM 23 O O23 CM5 . . . G 3 -26.626 18.589 41.162 1 181.48 ? O23 CM5 502 B 1 HETATM 24 C C24 CM5 . . . G 3 -27.746 18.407 42.268 1 193.1 ? C24 CM5 502 B 1 HETATM 25 O O25 CM5 . . . G 3 -28.412 19.669 42.793 1 191.06 ? O25 CM5 502 B 1 HETATM 26 C C26 CM5 . . . G 3 -29.736 20.186 42.567 1 177.46 ? C26 CM5 502 B 1 HETATM 27 C C30 CM5 . . . G 3 -30.049 21.21 43.653 1 163.44 ? C30 CM5 502 B 1 HETATM 28 O O31 CM5 . . . G 3 -29.457 22.457 43.281 1 155.87 ? O31 CM5 502 B 1 HETATM 29 C C27 CM5 . . . G 3 -30.773 19.055 42.523 1 184.43 ? C27 CM5 502 B 1 HETATM 30 O O32 CM5 . . . G 3 -32.01 19.607 42.048 1 170.88 ? O32 CM5 502 B 1 HETATM 31 C C28 CM5 . . . G 3 -30.335 17.879 41.627 1 187.48 ? C28 CM5 502 B 1 HETATM 32 O O33 CM5 . . . G 3 -31.162 16.729 41.828 1 178.61 ? O33 CM5 502 B 1 HETATM 33 C C29 CM5 . . . G 3 -28.885 17.466 41.89 1 191.42 ? C29 CM5 502 B 1 HETATM 34 O O34 CM5 . . . G 3 -28.485 16.436 40.963 1 180.46 ? O34 CM5 502 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 34 #