data_5EM5
#
_model_server_result.job_id            IL4KjtehQYTZl2RDKdjX5Q 
_model_server_result.datetime_utc      '2024-12-01 06:31:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5em5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1101}' 
#
_entry.id    5EM5 
#
_exptl.entry_id    5EM5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              465.975 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-[2-(4-chlorophenyl)ethylamino]-~{N}-[4-(4-methylpiperazin-1-yl)phenyl]-2-oxidanylidene-1~{H}-pyridine-3-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5EM5 
_cell.length_a            148.968 
_cell.length_b            148.968 
_cell.length_c            148.968 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5EM5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C25 H28 Cl N5 O2' 
_chem_comp.formula_weight    465.975 
_chem_comp.id                5Q2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-[2-(4-chlorophenyl)ethylamino]-~{N}-[4-(4-methylpiperazin-1-yl)phenyl]-2-oxidanylidene-1~{H}-pyridine-3-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL C31 5Q2 sing 1 n n 
C32 C33 5Q2 doub 2 n y 
C32 C31 5Q2 sing 3 n y 
C33 C28 5Q2 sing 4 n y 
C31 C30 5Q2 doub 5 n y 
C28 C29 5Q2 doub 6 n y 
C28 C27 5Q2 sing 7 n n 
C30 C29 5Q2 sing 8 n y 
C27 C26 5Q2 sing 9 n n 
C26 N25 5Q2 sing 10 n n 
C19 C20 5Q2 doub 11 n n 
C19 C18 5Q2 sing 12 n n 
C20 N21 5Q2 sing 13 n n 
N25 C18 5Q2 sing 14 n n 
C18 C17 5Q2 doub 15 n n 
N21 C23 5Q2 sing 16 n n 
C23 C17 5Q2 sing 17 n n 
C23 O24 5Q2 doub 18 n n 
C17 C15 5Q2 sing 19 n n 
C15 O16 5Q2 doub 20 n n 
C15 N14 5Q2 sing 21 n n 
N14 C11 5Q2 sing 22 n n 
C11 C10 5Q2 doub 23 n y 
C11 C12 5Q2 sing 24 n y 
C10 C9 5Q2 sing 25 n y 
C12 C13 5Q2 doub 26 n y 
C9 C8 5Q2 doub 27 n y 
C13 C8 5Q2 sing 28 n y 
C8 N5 5Q2 sing 29 n n 
N5 C6 5Q2 sing 30 n n 
N5 C4 5Q2 sing 31 n n 
C6 C7 5Q2 sing 32 n n 
C4 C3 5Q2 sing 33 n n 
C7 N2 5Q2 sing 34 n n 
C3 N2 5Q2 sing 35 n n 
N2 C1 5Q2 sing 36 n n 
C4 H1 5Q2 sing 37 n n 
C4 H2 5Q2 sing 38 n n 
C6 H3 5Q2 sing 39 n n 
C6 H4 5Q2 sing 40 n n 
C7 H5 5Q2 sing 41 n n 
C7 H6 5Q2 sing 42 n n 
C9 H7 5Q2 sing 43 n n 
C10 H8 5Q2 sing 44 n n 
C12 H9 5Q2 sing 45 n n 
C13 H10 5Q2 sing 46 n n 
C3 H12 5Q2 sing 47 n n 
C3 H13 5Q2 sing 48 n n 
C1 H14 5Q2 sing 49 n n 
C1 H15 5Q2 sing 50 n n 
C1 H16 5Q2 sing 51 n n 
N14 H17 5Q2 sing 52 n n 
C19 H19 5Q2 sing 53 n n 
C20 H20 5Q2 sing 54 n n 
N25 H21 5Q2 sing 55 n n 
C26 H22 5Q2 sing 56 n n 
C26 H23 5Q2 sing 57 n n 
C27 H24 5Q2 sing 58 n n 
C27 H25 5Q2 sing 59 n n 
C29 H26 5Q2 sing 60 n n 
C30 H27 5Q2 sing 61 n n 
C32 H28 5Q2 sing 62 n n 
C33 H29 5Q2 sing 63 n n 
N21 H11 5Q2 sing 64 n n 
#
_atom_sites.entry_id                     5EM5 
_atom_sites.fract_transf_matrix[1][1]    0.006713 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006713 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006713 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 5Q2 A 1 1101 1 5Q2 DRG . 
C 3 HOH A 1 1201 6 HOH HOH . 
C 3 HOH A 2 1202 3 HOH HOH . 
C 3 HOH A 3 1203 5 HOH HOH . 
C 3 HOH A 4 1204 8 HOH HOH . 
C 3 HOH A 5 1205 1 HOH HOH . 
C 3 HOH A 6 1206 4 HOH HOH . 
C 3 HOH A 7 1207 2 HOH HOH . 
C 3 HOH A 8 1208 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 5Q2 . . . B 2 -53.176 -0.146 -15.608 1 64.81 ? C4 5Q2 1101 A 1 
HETATM 2 C C6 5Q2 . . . B 2 -50.94 0.957 -15.828 1 70.22 ? C6 5Q2 1101 A 1 
HETATM 3 C C11 5Q2 . . . B 2 -53.459 1.491 -20.265 1 56.43 ? C11 5Q2 1101 A 1 
HETATM 4 C C7 5Q2 . . . B 2 -50.772 0.849 -14.295 1 73.03 ? C7 5Q2 1101 A 1 
HETATM 5 C C8 5Q2 . . . B 2 -52.683 1.135 -17.579 1 62.24 ? C8 5Q2 1101 A 1 
HETATM 6 C C9 5Q2 . . . B 2 -51.907 0.598 -18.624 1 61.49 ? C9 5Q2 1101 A 1 
HETATM 7 C C10 5Q2 . . . B 2 -52.286 0.782 -19.953 1 59.03 ? C10 5Q2 1101 A 1 
HETATM 8 C C12 5Q2 . . . B 2 -54.234 1.998 -19.222 1 56.8 ? C12 5Q2 1101 A 1 
HETATM 9 C C13 5Q2 . . . B 2 -53.857 1.826 -17.901 1 59.24 ? C13 5Q2 1101 A 1 
HETATM 10 N N2 5Q2 . . . B 2 -51.602 -0.258 -13.765 1 72.06 ? N2 5Q2 1101 A 1 
HETATM 11 C C3 5Q2 . . . B 2 -53.035 -0.11 -14.081 1 67.81 ? C3 5Q2 1101 A 1 
HETATM 12 C C1 5Q2 . . . B 2 -51.396 -0.483 -12.327 1 74.56 ? C1 5Q2 1101 A 1 
HETATM 13 N N5 5Q2 . . . B 2 -52.377 0.953 -16.209 1 66.1 ? N5 5Q2 1101 A 1 
HETATM 14 N N14 5Q2 . . . B 2 -53.966 1.693 -21.569 1 53.71 ? N14 5Q2 1101 A 1 
HETATM 15 C C15 5Q2 . . . B 2 -53.86 0.878 -22.658 1 52.85 ? C15 5Q2 1101 A 1 
HETATM 16 O O16 5Q2 . . . B 2 -53.202 -0.146 -22.584 1 54.09 ? O16 5Q2 1101 A 1 
HETATM 17 C C17 5Q2 . . . B 2 -54.572 1.199 -23.926 1 50.71 ? C17 5Q2 1101 A 1 
HETATM 18 C C18 5Q2 . . . B 2 -54.312 0.483 -25.143 1 50.84 ? C18 5Q2 1101 A 1 
HETATM 19 C C19 5Q2 . . . B 2 -55.054 0.831 -26.305 1 47.48 ? C19 5Q2 1101 A 1 
HETATM 20 C C20 5Q2 . . . B 2 -55.998 1.796 -26.28 1 44.69 ? C20 5Q2 1101 A 1 
HETATM 21 N N21 5Q2 . . . B 2 -56.265 2.461 -25.13 1 44.96 ? N21 5Q2 1101 A 1 
HETATM 22 C C23 5Q2 . . . B 2 -55.606 2.207 -23.972 1 47.68 ? C23 5Q2 1101 A 1 
HETATM 23 O O24 5Q2 . . . B 2 -55.93 2.874 -22.996 1 46.25 ? O24 5Q2 1101 A 1 
HETATM 24 N N25 5Q2 . . . B 2 -53.347 -0.521 -25.204 1 54.57 ? N25 5Q2 1101 A 1 
HETATM 25 C C26 5Q2 . . . B 2 -53.153 -1.486 -26.305 1 57.23 ? C26 5Q2 1101 A 1 
HETATM 26 C C27 5Q2 . . . B 2 -51.87 -1.16 -27.084 1 63.83 ? C27 5Q2 1101 A 1 
HETATM 27 C C28 5Q2 . . . B 2 -52.073 0.142 -27.818 1 68.6 ? C28 5Q2 1101 A 1 
HETATM 28 C C29 5Q2 . . . B 2 -51.804 1.343 -27.162 1 70.98 ? C29 5Q2 1101 A 1 
HETATM 29 C C30 5Q2 . . . B 2 -52.064 2.558 -27.769 1 71.5 ? C30 5Q2 1101 A 1 
HETATM 30 C C31 5Q2 . . . B 2 -52.545 2.562 -29.069 1 71.87 ? C31 5Q2 1101 A 1 
HETATM 31 C C32 5Q2 . . . B 2 -52.757 1.369 -29.758 1 70.53 ? C32 5Q2 1101 A 1 
HETATM 32 C C33 5Q2 . . . B 2 -52.553 0.149 -29.125 1 69.72 ? C33 5Q2 1101 A 1 
HETATM 33 CL CL 5Q2 . . . B 2 -52.831 4.086 -29.83 1 74.7 ? CL 5Q2 1101 A 1 
#
_model_server_stats.io_time_ms              73 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           238 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           33 
#