data_5EM7 # _model_server_result.job_id z4iXsl3zIaf06-jXNTm2FA _model_server_result.datetime_utc '2025-02-17 10:26:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5em7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1102}' # _entry.id 5EM7 # _exptl.entry_id 5EM7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 433.503 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(2-methoxyphenyl)amino]-~{N}-[4-(4-methylpiperazin-1-yl)phenyl]-2-oxidanylidene-1~{H}-pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EM7 _cell.length_a 146.105 _cell.length_b 146.105 _cell.length_c 146.105 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EM7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H27 N5 O3' _chem_comp.formula_weight 433.503 _chem_comp.id 5Q4 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(2-methoxyphenyl)amino]-~{N}-[4-(4-methylpiperazin-1-yl)phenyl]-2-oxidanylidene-1~{H}-pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C33 O32 5Q4 sing 1 n n O32 C31 5Q4 sing 2 n n C30 C31 5Q4 doub 3 n y C30 C29 5Q4 sing 4 n y C31 C26 5Q4 sing 5 n y C19 C20 5Q4 doub 6 n n C19 C18 5Q4 sing 7 n n C20 N21 5Q4 sing 8 n n C29 C28 5Q4 doub 9 n y C26 N25 5Q4 sing 10 n n C26 C27 5Q4 doub 11 n y N25 C18 5Q4 sing 12 n n C18 C17 5Q4 doub 13 n n N21 C23 5Q4 sing 14 n n C28 C27 5Q4 sing 15 n y C23 C17 5Q4 sing 16 n n C23 O24 5Q4 doub 17 n n C17 C15 5Q4 sing 18 n n O16 C15 5Q4 doub 19 n n C15 N14 5Q4 sing 20 n n N14 C11 5Q4 sing 21 n n C11 C12 5Q4 doub 22 n y C11 C10 5Q4 sing 23 n y C12 C13 5Q4 sing 24 n y C10 C9 5Q4 doub 25 n y C13 C8 5Q4 doub 26 n y C9 C8 5Q4 sing 27 n y C8 N5 5Q4 sing 28 n n N5 C6 5Q4 sing 29 n n N5 C4 5Q4 sing 30 n n C6 C7 5Q4 sing 31 n n C4 C3 5Q4 sing 32 n n C7 N2 5Q4 sing 33 n n C3 N2 5Q4 sing 34 n n N2 C1 5Q4 sing 35 n n C4 H1 5Q4 sing 36 n n C4 H2 5Q4 sing 37 n n C6 H3 5Q4 sing 38 n n C6 H4 5Q4 sing 39 n n C7 H5 5Q4 sing 40 n n C7 H6 5Q4 sing 41 n n C9 H7 5Q4 sing 42 n n C10 H8 5Q4 sing 43 n n C12 H9 5Q4 sing 44 n n C13 H10 5Q4 sing 45 n n C3 H12 5Q4 sing 46 n n C3 H13 5Q4 sing 47 n n C1 H14 5Q4 sing 48 n n C1 H15 5Q4 sing 49 n n C1 H16 5Q4 sing 50 n n N14 H17 5Q4 sing 51 n n C19 H18 5Q4 sing 52 n n C20 H19 5Q4 sing 53 n n N21 H22 5Q4 sing 54 n n N25 H20 5Q4 sing 55 n n C27 H21 5Q4 sing 56 n n C28 H23 5Q4 sing 57 n n C29 H24 5Q4 sing 58 n n C30 H25 5Q4 sing 59 n n C33 H26 5Q4 sing 60 n n C33 H27 5Q4 sing 61 n n C33 H28 5Q4 sing 62 n n # _atom_sites.entry_id 5EM7 _atom_sites.fract_transf_matrix[1][1] 0.006844 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006844 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006844 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1101 1 SO4 SO4 . C 3 5Q4 A 1 1102 1 5Q4 DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 5Q4 . A . C 3 -51.945 -0.133 -14.228 0.5 72.2 ? C4 5Q4 1102 A 1 HETATM 2 C C4 5Q4 . B . C 3 -51.827 -0.246 -14.172 0.5 68.47 ? C4 5Q4 1102 A 1 HETATM 3 C C6 5Q4 . A . C 3 -49.521 0.092 -14.822 0.5 76.79 ? C6 5Q4 1102 A 1 HETATM 4 C C6 5Q4 . B . C 3 -49.424 0.068 -14.78 0.5 73.11 ? C6 5Q4 1102 A 1 HETATM 5 C C11 5Q4 . A . C 3 -52.244 0.943 -19.019 0.5 68.65 ? C11 5Q4 1102 A 1 HETATM 6 C C11 5Q4 . B . C 3 -52.224 0.936 -18.935 0.5 63.82 ? C11 5Q4 1102 A 1 HETATM 7 C C7 5Q4 . A . C 3 -49.177 -0.152 -13.339 0.5 79.02 ? C7 5Q4 1102 A 1 HETATM 8 C C7 5Q4 . B . C 3 -49.056 -0.125 -13.296 0.5 75.53 ? C7 5Q4 1102 A 1 HETATM 9 C C8 5Q4 . A . C 3 -51.317 0.712 -16.36 0.5 72.12 ? C8 5Q4 1102 A 1 HETATM 10 C C8 5Q4 . B . C 3 -51.253 0.666 -16.297 0.5 67.85 ? C8 5Q4 1102 A 1 HETATM 11 C C9 5Q4 . A . C 3 -52.279 1.674 -16.704 0.5 70.69 ? C9 5Q4 1102 A 1 HETATM 12 C C9 5Q4 . B . C 3 -52.229 1.625 -16.607 0.5 66.25 ? C9 5Q4 1102 A 1 HETATM 13 C C10 5Q4 . A . C 3 -52.734 1.784 -18.013 0.5 68.98 ? C10 5Q4 1102 A 1 HETATM 14 C C10 5Q4 . B . C 3 -52.704 1.756 -17.906 0.5 64.3 ? C10 5Q4 1102 A 1 HETATM 15 C C12 5Q4 . A . C 3 -51.304 -0.04 -18.677 0.5 69.4 ? C12 5Q4 1102 A 1 HETATM 16 C C12 5Q4 . B . C 3 -51.264 -0.04 -18.631 0.5 64.71 ? C12 5Q4 1102 A 1 HETATM 17 C C13 5Q4 . A . C 3 -50.847 -0.154 -17.368 0.5 71.35 ? C13 5Q4 1102 A 1 HETATM 18 C C13 5Q4 . B . C 3 -50.788 -0.175 -17.329 0.5 66.86 ? C13 5Q4 1102 A 1 HETATM 19 N N2 5Q4 . A . C 3 -50.241 -0.944 -12.684 0.5 77.31 ? N2 5Q4 1102 A 1 HETATM 20 N N2 5Q4 . B . C 3 -50.083 -0.939 -12.605 0.5 73.99 ? N2 5Q4 1102 A 1 HETATM 21 C C3 5Q4 . A . C 3 -51.556 -0.28 -12.752 0.5 74.35 ? C3 5Q4 1102 A 1 HETATM 22 C C3 5Q4 . B . C 3 -51.433 -0.351 -12.692 0.5 70.85 ? C3 5Q4 1102 A 1 HETATM 23 C C1 5Q4 . A . C 3 -49.891 -1.266 -11.292 0.5 79.44 ? C1 5Q4 1102 A 1 HETATM 24 C C1 5Q4 . B . C 3 -49.711 -1.188 -11.203 0.5 76.11 ? C1 5Q4 1102 A 1 HETATM 25 N N5 5Q4 . A . C 3 -50.91 0.597 -15.008 0.5 73.74 ? N5 5Q4 1102 A 1 HETATM 26 N N5 5Q4 . B . C 3 -50.828 0.531 -14.951 0.5 69.84 ? N5 5Q4 1102 A 1 HETATM 27 N N14 5Q4 . A . C 3 -52.793 1.099 -20.315 0.5 68.17 ? N14 5Q4 1102 A 1 HETATM 28 N N14 5Q4 . B . C 3 -52.795 1.128 -20.216 0.5 63.11 ? N14 5Q4 1102 A 1 HETATM 29 C C15 5Q4 . A . C 3 -52.495 0.46 -21.481 0.5 68.91 ? C15 5Q4 1102 A 1 HETATM 30 C C15 5Q4 . B . C 3 -52.582 0.481 -21.397 0.5 63.51 ? C15 5Q4 1102 A 1 HETATM 31 O O16 5Q4 . A . C 3 -51.619 -0.385 -21.488 0.5 69.3 ? O16 5Q4 1102 A 1 HETATM 32 O O16 5Q4 . B . C 3 -51.769 -0.423 -21.44 0.5 63.75 ? O16 5Q4 1102 A 1 HETATM 33 C C17 5Q4 . A . C 3 -53.257 0.753 -22.732 0.5 69.84 ? C17 5Q4 1102 A 1 HETATM 34 C C17 5Q4 . B . C 3 -53.37 0.848 -22.614 0.5 64.29 ? C17 5Q4 1102 A 1 HETATM 35 C C18 5Q4 . A . C 3 -52.925 0.146 -23.992 0.5 71.73 ? C18 5Q4 1102 A 1 HETATM 36 C C18 5Q4 . B . C 3 -53.155 0.221 -23.892 0.5 66.3 ? C18 5Q4 1102 A 1 HETATM 37 C C19 5Q4 . A . C 3 -53.694 0.46 -25.14 0.5 70.44 ? C19 5Q4 1102 A 1 HETATM 38 C C19 5Q4 . B . C 3 -53.962 0.619 -24.994 0.5 64.69 ? C19 5Q4 1102 A 1 HETATM 39 C C20 5Q4 . A . C 3 -54.748 1.304 -25.058 0.5 69.01 ? C20 5Q4 1102 A 1 HETATM 40 C C20 5Q4 . B . C 3 -54.927 1.556 -24.861 0.5 63.24 ? C20 5Q4 1102 A 1 HETATM 41 N N21 5Q4 . A . C 3 -55.075 1.893 -23.878 0.5 68.44 ? N21 5Q4 1102 A 1 HETATM 42 N N21 5Q4 . B . C 3 -55.137 2.156 -23.662 0.5 62.81 ? N21 5Q4 1102 A 1 HETATM 43 C C23 5Q4 . A . C 3 -54.386 1.65 -22.735 0.5 69.33 ? C23 5Q4 1102 A 1 HETATM 44 C C23 5Q4 . B . C 3 -54.413 1.844 -22.559 0.5 63.56 ? C23 5Q4 1102 A 1 HETATM 45 O O24 5Q4 . A . C 3 -54.759 2.237 -21.731 0.5 69.76 ? O24 5Q4 1102 A 1 HETATM 46 O O24 5Q4 . B . C 3 -54.688 2.454 -21.537 0.5 63.6 ? O24 5Q4 1102 A 1 HETATM 47 N N25 5Q4 . A . C 3 -51.846 -0.706 -24.159 0.5 74.71 ? N25 5Q4 1102 A 1 HETATM 48 N N25 5Q4 . B . C 3 -52.174 -0.751 -24.077 0.5 69.96 ? N25 5Q4 1102 A 1 HETATM 49 C C26 5Q4 . A . C 3 -51.907 -2.078 -24.462 0.5 75.54 ? C26 5Q4 1102 A 1 HETATM 50 C C26 5Q4 . B . C 3 -52.018 -1.579 -25.211 0.5 72.19 ? C26 5Q4 1102 A 1 HETATM 51 C C27 5Q4 . A . C 3 -52.106 -2.999 -23.427 0.5 75.49 ? C27 5Q4 1102 A 1 HETATM 52 C C27 5Q4 . B . C 3 -51.591 -1.034 -26.432 0.5 73.81 ? C27 5Q4 1102 A 1 HETATM 53 C C28 5Q4 . A . C 3 -52.124 -4.365 -23.689 0.5 75.71 ? C28 5Q4 1102 A 1 HETATM 54 C C28 5Q4 . B . C 3 -51.434 -1.844 -27.552 0.5 74.76 ? C28 5Q4 1102 A 1 HETATM 55 C C29 5Q4 . A . C 3 -51.899 -4.826 -24.982 0.5 76.6 ? C29 5Q4 1102 A 1 HETATM 56 C C29 5Q4 . B . C 3 -51.647 -3.216 -27.454 0.5 74.65 ? C29 5Q4 1102 A 1 HETATM 57 C C30 5Q4 . A . C 3 -51.663 -3.924 -26.016 0.5 77.1 ? C30 5Q4 1102 A 1 HETATM 58 C C30 5Q4 . B . C 3 -52.036 -3.777 -26.24 0.5 73.57 ? C30 5Q4 1102 A 1 HETATM 59 C C31 5Q4 . A . C 3 -51.669 -2.543 -25.772 0.5 76.67 ? C31 5Q4 1102 A 1 HETATM 60 C C31 5Q4 . B . C 3 -52.204 -2.974 -25.105 0.5 72.76 ? C31 5Q4 1102 A 1 HETATM 61 O O32 5Q4 . A . C 3 -51.424 -1.658 -26.79 0.5 77.1 ? O32 5Q4 1102 A 1 HETATM 62 O O32 5Q4 . B . C 3 -52.606 -3.542 -23.926 0.5 72.25 ? O32 5Q4 1102 A 1 HETATM 63 C C33 5Q4 . A . C 3 -52.356 -1.539 -27.876 0.5 75.53 ? C33 5Q4 1102 A 1 HETATM 64 C C33 5Q4 . B . C 3 -51.62 -4.078 -23.033 0.5 73.52 ? C33 5Q4 1102 A 1 HETATM 65 H H22 5Q4 . A . C 3 -55.828 2.504 -23.855 0.5 68.03 ? H22 5Q4 1102 A 1 HETATM 66 H H22 5Q4 . B . C 3 -55.83 2.832 -23.597 0.5 62.55 ? H22 5Q4 1102 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 66 #