data_5EM8 # _model_server_result.job_id 1EfzNb1ksqBgKGthN9r4VQ _model_server_result.datetime_utc '2024-11-25 07:57:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5em8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 5EM8 # _exptl.entry_id 5EM8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 433.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(2-methoxyphenyl)amino]-~{N}-[4-(4-methylpiperazin-1-yl)phenyl]-2-oxidanylidene-1~{H}-pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EM8 _cell.length_a 147.661 _cell.length_b 147.661 _cell.length_c 147.661 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EM8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H27 N5 O3' _chem_comp.formula_weight 433.503 _chem_comp.id 5Q4 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(2-methoxyphenyl)amino]-~{N}-[4-(4-methylpiperazin-1-yl)phenyl]-2-oxidanylidene-1~{H}-pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C33 O32 5Q4 sing 1 n n O32 C31 5Q4 sing 2 n n C30 C31 5Q4 doub 3 n y C30 C29 5Q4 sing 4 n y C31 C26 5Q4 sing 5 n y C19 C20 5Q4 doub 6 n n C19 C18 5Q4 sing 7 n n C20 N21 5Q4 sing 8 n n C29 C28 5Q4 doub 9 n y C26 N25 5Q4 sing 10 n n C26 C27 5Q4 doub 11 n y N25 C18 5Q4 sing 12 n n C18 C17 5Q4 doub 13 n n N21 C23 5Q4 sing 14 n n C28 C27 5Q4 sing 15 n y C23 C17 5Q4 sing 16 n n C23 O24 5Q4 doub 17 n n C17 C15 5Q4 sing 18 n n O16 C15 5Q4 doub 19 n n C15 N14 5Q4 sing 20 n n N14 C11 5Q4 sing 21 n n C11 C12 5Q4 doub 22 n y C11 C10 5Q4 sing 23 n y C12 C13 5Q4 sing 24 n y C10 C9 5Q4 doub 25 n y C13 C8 5Q4 doub 26 n y C9 C8 5Q4 sing 27 n y C8 N5 5Q4 sing 28 n n N5 C6 5Q4 sing 29 n n N5 C4 5Q4 sing 30 n n C6 C7 5Q4 sing 31 n n C4 C3 5Q4 sing 32 n n C7 N2 5Q4 sing 33 n n C3 N2 5Q4 sing 34 n n N2 C1 5Q4 sing 35 n n C4 H1 5Q4 sing 36 n n C4 H2 5Q4 sing 37 n n C6 H3 5Q4 sing 38 n n C6 H4 5Q4 sing 39 n n C7 H5 5Q4 sing 40 n n C7 H6 5Q4 sing 41 n n C9 H7 5Q4 sing 42 n n C10 H8 5Q4 sing 43 n n C12 H9 5Q4 sing 44 n n C13 H10 5Q4 sing 45 n n C3 H12 5Q4 sing 46 n n C3 H13 5Q4 sing 47 n n C1 H14 5Q4 sing 48 n n C1 H15 5Q4 sing 49 n n C1 H16 5Q4 sing 50 n n N14 H17 5Q4 sing 51 n n C19 H18 5Q4 sing 52 n n C20 H19 5Q4 sing 53 n n N21 H22 5Q4 sing 54 n n N25 H20 5Q4 sing 55 n n C27 H21 5Q4 sing 56 n n C28 H23 5Q4 sing 57 n n C29 H24 5Q4 sing 58 n n C30 H25 5Q4 sing 59 n n C33 H26 5Q4 sing 60 n n C33 H27 5Q4 sing 61 n n C33 H28 5Q4 sing 62 n n # _atom_sites.entry_id 5EM8 _atom_sites.fract_transf_matrix[1][1] 0.006772 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006772 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 5Q4 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 5Q4 _pdbx_nonpoly_scheme.auth_mon_id DRG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 5Q4 . . . B 2 -52.905 -0.209 -14.122 1 103.86 ? C4 5Q4 1101 A 1 HETATM 2 C C6 5Q4 . . . B 2 -50.437 0.014 -14.463 1 109.71 ? C6 5Q4 1101 A 1 HETATM 3 C C11 5Q4 . . . B 2 -52.84 0.621 -18.959 1 94.85 ? C11 5Q4 1101 A 1 HETATM 4 C C7 5Q4 . . . B 2 -50.263 -0.037 -12.932 1 112.29 ? C7 5Q4 1101 A 1 HETATM 5 C C8 5Q4 . . . B 2 -52.088 0.514 -16.241 1 102.1 ? C8 5Q4 1101 A 1 HETATM 6 C C9 5Q4 . . . B 2 -51.446 -0.301 -17.195 1 99.83 ? C9 5Q4 1101 A 1 HETATM 7 C C10 5Q4 . . . B 2 -51.812 -0.242 -18.538 1 97.03 ? C10 5Q4 1101 A 1 HETATM 8 C C12 5Q4 . . . B 2 -53.483 1.417 -18.01 1 96.24 ? C12 5Q4 1101 A 1 HETATM 9 C C13 5Q4 . . . B 2 -53.11 1.37 -16.675 1 99.62 ? C13 5Q4 1101 A 1 HETATM 10 N N2 5Q4 . . . B 2 -51.393 -0.779 -12.331 1 110.04 ? N2 5Q4 1101 A 1 HETATM 11 C C3 5Q4 . . . B 2 -52.687 -0.13 -12.605 1 107.12 ? C3 5Q4 1101 A 1 HETATM 12 C C1 5Q4 . . . B 2 -51.205 -1.05 -10.897 1 112.09 ? C1 5Q4 1101 A 1 HETATM 13 N N5 5Q4 . . . B 2 -51.803 0.469 -14.85 1 106.04 ? N5 5Q4 1101 A 1 HETATM 14 N N14 5Q4 . . . B 2 -53.319 0.739 -20.283 1 92.62 ? N14 5Q4 1101 A 1 HETATM 15 C C15 5Q4 . . . B 2 -53.006 0.041 -21.41 1 93.96 ? C15 5Q4 1101 A 1 HETATM 16 O O16 5Q4 . . . B 2 -52.174 -0.847 -21.346 1 93.28 ? O16 5Q4 1101 A 1 HETATM 17 C C17 5Q4 . . . B 2 -53.716 0.328 -22.699 1 96.03 ? C17 5Q4 1101 A 1 HETATM 18 C C18 5Q4 . . . B 2 -53.365 -0.326 -23.939 1 101.68 ? C18 5Q4 1101 A 1 HETATM 19 C C19 5Q4 . . . B 2 -54.105 0.001 -25.112 1 97.87 ? C19 5Q4 1101 A 1 HETATM 20 C C20 5Q4 . . . B 2 -55.141 0.872 -25.083 1 95.01 ? C20 5Q4 1101 A 1 HETATM 21 N N21 5Q4 . . . B 2 -55.472 1.5 -23.924 1 93.98 ? N21 5Q4 1101 A 1 HETATM 22 C C23 5Q4 . . . B 2 -54.816 1.272 -22.755 1 93.2 ? C23 5Q4 1101 A 1 HETATM 23 O O24 5Q4 . . . B 2 -55.203 1.912 -21.781 1 90.72 ? O24 5Q4 1101 A 1 HETATM 24 N N25 5Q4 . . . B 2 -52.301 -1.225 -24.05 1 112.56 ? N25 5Q4 1101 A 1 HETATM 25 C C26 5Q4 . . . B 2 -52.333 -2.5 -24.664 1 122.99 ? C26 5Q4 1101 A 1 HETATM 26 C C27 5Q4 . . . B 2 -52.655 -2.632 -26.029 1 125.71 ? C27 5Q4 1101 A 1 HETATM 27 C C28 5Q4 . . . B 2 -52.699 -3.883 -26.637 1 127.81 ? C28 5Q4 1101 A 1 HETATM 28 C C29 5Q4 . . . B 2 -52.364 -5.02 -25.901 1 129.85 ? C29 5Q4 1101 A 1 HETATM 29 C C30 5Q4 . . . B 2 -52.026 -4.914 -24.551 1 130.45 ? C30 5Q4 1101 A 1 HETATM 30 C C31 5Q4 . . . B 2 -51.974 -3.658 -23.926 1 129.75 ? C31 5Q4 1101 A 1 HETATM 31 O O32 5Q4 . . . B 2 -51.604 -3.582 -22.603 1 133.33 ? O32 5Q4 1101 A 1 HETATM 32 C C33 5Q4 . . . B 2 -50.209 -3.437 -22.269 1 134.99 ? C33 5Q4 1101 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 32 #