data_5EMA # _model_server_result.job_id nJ6rayY90Q6nVvO1UcDscQ _model_server_result.datetime_utc '2025-03-04 14:55:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ema # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5EMA # _exptl.entry_id 5EMA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EMA _cell.length_a 37.171 _cell.length_b 48.49 _cell.length_c 56.229 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EMA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ILE 4 B ILE 3 1_555 B N SEP 5 B SEP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 B C SEP 5 B SEP 4 1_555 B N THR 6 B THR 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 5EMA _atom_sites.fract_transf_matrix[1][1] 0.026903 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020623 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017784 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 201 1 GOL GOL . D 4 HOH A 1 301 133 HOH HOH . D 4 HOH A 2 302 137 HOH HOH . D 4 HOH A 3 303 80 HOH HOH . D 4 HOH A 4 304 121 HOH HOH . D 4 HOH A 5 305 81 HOH HOH . D 4 HOH A 6 306 106 HOH HOH . D 4 HOH A 7 307 71 HOH HOH . D 4 HOH A 8 308 99 HOH HOH . D 4 HOH A 9 309 68 HOH HOH . D 4 HOH A 10 310 120 HOH HOH . D 4 HOH A 11 311 123 HOH HOH . D 4 HOH A 12 312 30 HOH HOH . D 4 HOH A 13 313 24 HOH HOH . D 4 HOH A 14 314 36 HOH HOH . D 4 HOH A 15 315 45 HOH HOH . D 4 HOH A 16 316 144 HOH HOH . D 4 HOH A 17 317 76 HOH HOH . D 4 HOH A 18 318 3 HOH HOH . D 4 HOH A 19 319 65 HOH HOH . D 4 HOH A 20 320 55 HOH HOH . D 4 HOH A 21 321 43 HOH HOH . D 4 HOH A 22 322 79 HOH HOH . D 4 HOH A 23 323 23 HOH HOH . D 4 HOH A 24 324 44 HOH HOH . D 4 HOH A 25 325 108 HOH HOH . D 4 HOH A 26 326 48 HOH HOH . D 4 HOH A 27 327 22 HOH HOH . D 4 HOH A 28 328 20 HOH HOH . D 4 HOH A 29 329 52 HOH HOH . D 4 HOH A 30 330 116 HOH HOH . D 4 HOH A 31 331 14 HOH HOH . D 4 HOH A 32 332 13 HOH HOH . D 4 HOH A 33 333 1 HOH HOH . D 4 HOH A 34 334 128 HOH HOH . D 4 HOH A 35 335 29 HOH HOH . D 4 HOH A 36 336 16 HOH HOH . D 4 HOH A 37 337 21 HOH HOH . D 4 HOH A 38 338 17 HOH HOH . D 4 HOH A 39 339 78 HOH HOH . D 4 HOH A 40 340 9 HOH HOH . D 4 HOH A 41 341 33 HOH HOH . D 4 HOH A 42 342 4 HOH HOH . D 4 HOH A 43 343 2 HOH HOH . D 4 HOH A 44 344 101 HOH HOH . D 4 HOH A 45 345 118 HOH HOH . D 4 HOH A 46 346 83 HOH HOH . D 4 HOH A 47 347 73 HOH HOH . D 4 HOH A 48 348 75 HOH HOH . D 4 HOH A 49 349 12 HOH HOH . D 4 HOH A 50 350 38 HOH HOH . D 4 HOH A 51 351 15 HOH HOH . D 4 HOH A 52 352 64 HOH HOH . D 4 HOH A 53 353 59 HOH HOH . D 4 HOH A 54 354 54 HOH HOH . D 4 HOH A 55 355 126 HOH HOH . D 4 HOH A 56 356 105 HOH HOH . D 4 HOH A 57 357 62 HOH HOH . D 4 HOH A 58 358 58 HOH HOH . D 4 HOH A 59 359 96 HOH HOH . D 4 HOH A 60 360 119 HOH HOH . D 4 HOH A 61 361 26 HOH HOH . D 4 HOH A 62 362 7 HOH HOH . D 4 HOH A 63 363 91 HOH HOH . D 4 HOH A 64 364 5 HOH HOH . D 4 HOH A 65 365 104 HOH HOH . D 4 HOH A 66 366 77 HOH HOH . D 4 HOH A 67 367 34 HOH HOH . D 4 HOH A 68 368 95 HOH HOH . D 4 HOH A 69 369 40 HOH HOH . D 4 HOH A 70 370 6 HOH HOH . D 4 HOH A 71 371 19 HOH HOH . D 4 HOH A 72 372 28 HOH HOH . D 4 HOH A 73 373 27 HOH HOH . D 4 HOH A 74 374 18 HOH HOH . D 4 HOH A 75 375 67 HOH HOH . D 4 HOH A 76 376 10 HOH HOH . D 4 HOH A 77 377 66 HOH HOH . D 4 HOH A 78 378 63 HOH HOH . D 4 HOH A 79 379 72 HOH HOH . D 4 HOH A 80 380 146 HOH HOH . D 4 HOH A 81 381 141 HOH HOH . D 4 HOH A 82 382 124 HOH HOH . D 4 HOH A 83 383 8 HOH HOH . D 4 HOH A 84 384 35 HOH HOH . D 4 HOH A 85 385 57 HOH HOH . D 4 HOH A 86 386 70 HOH HOH . D 4 HOH A 87 387 117 HOH HOH . D 4 HOH A 88 388 47 HOH HOH . D 4 HOH A 89 389 93 HOH HOH . D 4 HOH A 90 390 61 HOH HOH . D 4 HOH A 91 391 143 HOH HOH . D 4 HOH A 92 392 90 HOH HOH . D 4 HOH A 93 393 138 HOH HOH . D 4 HOH A 94 394 113 HOH HOH . D 4 HOH A 95 395 84 HOH HOH . D 4 HOH A 96 396 46 HOH HOH . D 4 HOH A 97 397 102 HOH HOH . D 4 HOH A 98 398 125 HOH HOH . D 4 HOH A 99 399 88 HOH HOH . D 4 HOH A 100 400 148 HOH HOH . D 4 HOH A 101 401 149 HOH HOH . D 4 HOH A 102 402 53 HOH HOH . D 4 HOH A 103 403 103 HOH HOH . D 4 HOH A 104 404 142 HOH HOH . D 4 HOH A 105 405 111 HOH HOH . D 4 HOH A 106 406 112 HOH HOH . D 4 HOH A 107 407 147 HOH HOH . D 4 HOH A 108 408 89 HOH HOH . D 4 HOH A 109 409 92 HOH HOH . D 4 HOH A 110 410 87 HOH HOH . D 4 HOH A 111 411 100 HOH HOH . D 4 HOH A 112 412 97 HOH HOH . D 4 HOH A 113 413 145 HOH HOH . D 4 HOH A 114 414 132 HOH HOH . D 4 HOH A 115 415 98 HOH HOH . D 4 HOH A 116 416 82 HOH HOH . D 4 HOH A 117 417 51 HOH HOH . D 4 HOH A 118 418 49 HOH HOH . D 4 HOH A 119 419 140 HOH HOH . D 4 HOH A 120 420 11 HOH HOH . D 4 HOH A 121 421 94 HOH HOH . D 4 HOH A 122 422 139 HOH HOH . D 4 HOH A 123 423 74 HOH HOH . D 4 HOH A 124 424 127 HOH HOH . D 4 HOH A 125 425 85 HOH HOH . D 4 HOH A 126 426 129 HOH HOH . D 4 HOH A 127 427 50 HOH HOH . D 4 HOH A 128 428 56 HOH HOH . D 4 HOH A 129 429 150 HOH HOH . D 4 HOH A 130 430 136 HOH HOH . D 4 HOH A 131 431 39 HOH HOH . D 4 HOH A 132 432 110 HOH HOH . D 4 HOH A 133 433 130 HOH HOH . D 4 HOH A 134 434 109 HOH HOH . E 4 HOH B 1 101 25 HOH HOH . E 4 HOH B 2 102 60 HOH HOH . E 4 HOH B 3 103 41 HOH HOH . E 4 HOH B 4 104 31 HOH HOH . E 4 HOH B 5 105 134 HOH HOH . E 4 HOH B 6 106 32 HOH HOH . E 4 HOH B 7 107 86 HOH HOH . E 4 HOH B 8 108 42 HOH HOH . E 4 HOH B 9 109 37 HOH HOH . E 4 HOH B 10 110 69 HOH HOH . E 4 HOH B 11 111 122 HOH HOH . E 4 HOH B 12 112 107 HOH HOH . E 4 HOH B 13 113 135 HOH HOH . E 4 HOH B 14 114 115 HOH HOH . E 4 HOH B 15 115 131 HOH HOH . E 4 HOH B 16 116 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -2.387 7.829 15.627 1 25.8 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . C 3 -3.314 8.635 16.359 1 25.04 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . C 3 -2.422 6.41 16.198 1 27.35 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . C 3 -3.072 5.543 15.32 1 39.23 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . C 3 -1.12 5.809 16.691 1 26.91 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . C 3 -1.404 4.55 17.331 1 28.62 ? O3 GOL 201 A 1 HETATM 7 H H11 GOL . . . C 3 -2.66 7.813 14.572 1 30.96 ? H11 GOL 201 A 1 HETATM 8 H H12 GOL . . . C 3 -1.383 8.241 15.718 1 30.96 ? H12 GOL 201 A 1 HETATM 9 H HO1 GOL . . . C 3 -3.255 9.563 16.048 1 30.05 ? HO1 GOL 201 A 1 HETATM 10 H H2 GOL . . . C 3 -3.054 6.479 17.084 1 32.82 ? H2 GOL 201 A 1 HETATM 11 H H31 GOL . . . C 3 -0.441 5.655 15.853 1 32.29 ? H31 GOL 201 A 1 HETATM 12 H H32 GOL . . . C 3 -0.643 6.487 17.399 1 32.29 ? H32 GOL 201 A 1 HETATM 13 H HO3 GOL . . . C 3 -1.08 3.817 16.768 1 34.35 ? HO3 GOL 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #