data_5EMK # _model_server_result.job_id Fs38D6jZtuDWau98v1c7Sw _model_server_result.datetime_utc '2024-12-26 19:06:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5emk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 5EMK # _exptl.entry_id 5EMK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 387.474 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[(2~{S})-3-(3,4-dihydro-1~{H}-isoquinolin-2-yl)-2-oxidanyl-propyl]-3-pyridin-2-yl-benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EMK _cell.length_a 102.79 _cell.length_b 137.75 _cell.length_c 178.52 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EMK _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -137.75 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -137.75 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 208 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 255 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 247 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.065 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H25 N3 O2' _chem_comp.formula_weight 387.474 _chem_comp.id 5QH _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[(2~{S})-3-(3,4-dihydro-1~{H}-isoquinolin-2-yl)-2-oxidanyl-propyl]-3-pyridin-2-yl-benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC NAD 5QH sing 1 n n CAC CAB 5QH sing 2 n n OAA CAB 5QH sing 3 n n CAU CAV 5QH sing 4 n n CAU NAT 5QH sing 5 n n CAS CAB 5QH sing 6 n n CAS NAT 5QH sing 7 n n NAD CAE 5QH sing 8 n n CAV CAW 5QH sing 9 n n NAT CAY 5QH sing 10 n n CAO NAN 5QH doub 11 n y CAO CAP 5QH sing 12 n y NAN CAM 5QH sing 13 n y CAE OAF 5QH doub 14 n n CAE CAG 5QH sing 15 n n CAH CAG 5QH doub 16 n y CAH CAI 5QH sing 17 n y CAG CAL 5QH sing 18 n y CAP CAQ 5QH doub 19 n y CAW CBC 5QH doub 20 n y CAW CAX 5QH sing 21 n y CAY CAX 5QH sing 22 n n CAM CAI 5QH sing 23 n n CAM CAR 5QH doub 24 n y CAI CAJ 5QH doub 25 n y CBC CBB 5QH sing 26 n y CAX CAZ 5QH doub 27 n y CAL CAK 5QH doub 28 n y CAQ CAR 5QH sing 29 n y CAJ CAK 5QH sing 30 n y CBB CBA 5QH doub 31 n y CAZ CBA 5QH sing 32 n y CAU H1 5QH sing 33 n n CAU H2 5QH sing 34 n n CAV H3 5QH sing 35 n n CAV H4 5QH sing 36 n n CBC H5 5QH sing 37 n n CBB H6 5QH sing 38 n n CBA H7 5QH sing 39 n n CAZ H8 5QH sing 40 n n CAY H9 5QH sing 41 n n CAY H10 5QH sing 42 n n CAS H12 5QH sing 43 n n CAS H13 5QH sing 44 n n CAB H14 5QH sing 45 n n OAA H15 5QH sing 46 n n CAC H16 5QH sing 47 n n CAC H17 5QH sing 48 n n NAD H18 5QH sing 49 n n CAH H19 5QH sing 50 n n CAL H20 5QH sing 51 n n CAK H21 5QH sing 52 n n CAJ H22 5QH sing 53 n n CAO H23 5QH sing 54 n n CAP H24 5QH sing 55 n n CAQ H25 5QH sing 56 n n CAR H26 5QH sing 57 n n # _atom_sites.entry_id 5EMK _atom_sites.fract_transf_matrix[1][1] 0.009729 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00726 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005602 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SFG A 1 701 1 SFG SFG . D 4 5QH A 1 702 1 5QH EPZ . E 5 GOL A 1 703 1 GOL GOL . F 5 GOL A 1 704 2 GOL GOL . G 6 HOH A 1 801 51 HOH HOH . G 6 HOH A 2 802 40 HOH HOH . G 6 HOH A 3 803 30 HOH HOH . G 6 HOH A 4 804 14 HOH HOH . G 6 HOH A 5 805 26 HOH HOH . G 6 HOH A 6 806 1 HOH HOH . G 6 HOH A 7 807 52 HOH HOH . G 6 HOH A 8 808 71 HOH HOH . G 6 HOH A 9 809 12 HOH HOH . G 6 HOH A 10 810 29 HOH HOH . G 6 HOH A 11 811 7 HOH HOH . G 6 HOH A 12 812 61 HOH HOH . G 6 HOH A 13 813 3 HOH HOH . G 6 HOH A 14 814 65 HOH HOH . G 6 HOH A 15 815 70 HOH HOH . G 6 HOH A 16 816 15 HOH HOH . G 6 HOH A 17 817 44 HOH HOH . G 6 HOH A 18 818 24 HOH HOH . G 6 HOH A 19 819 69 HOH HOH . G 6 HOH A 20 820 63 HOH HOH . G 6 HOH A 21 821 36 HOH HOH . G 6 HOH A 22 822 46 HOH HOH . G 6 HOH A 23 823 4 HOH HOH . G 6 HOH A 24 824 32 HOH HOH . G 6 HOH A 25 825 21 HOH HOH . G 6 HOH A 26 826 13 HOH HOH . G 6 HOH A 27 827 6 HOH HOH . G 6 HOH A 28 828 55 HOH HOH . G 6 HOH A 29 829 76 HOH HOH . G 6 HOH A 30 830 35 HOH HOH . G 6 HOH A 31 831 38 HOH HOH . G 6 HOH A 32 832 19 HOH HOH . G 6 HOH A 33 833 53 HOH HOH . G 6 HOH A 34 834 16 HOH HOH . G 6 HOH A 35 835 64 HOH HOH . G 6 HOH A 36 836 22 HOH HOH . G 6 HOH A 37 837 28 HOH HOH . G 6 HOH A 38 838 25 HOH HOH . G 6 HOH A 39 839 50 HOH HOH . G 6 HOH A 40 840 39 HOH HOH . G 6 HOH A 41 841 48 HOH HOH . G 6 HOH A 42 842 8 HOH HOH . G 6 HOH A 43 843 43 HOH HOH . G 6 HOH A 44 844 23 HOH HOH . G 6 HOH A 45 845 68 HOH HOH . G 6 HOH A 46 846 5 HOH HOH . G 6 HOH A 47 847 10 HOH HOH . G 6 HOH A 48 848 58 HOH HOH . G 6 HOH A 49 849 77 HOH HOH . G 6 HOH A 50 850 56 HOH HOH . G 6 HOH A 51 851 18 HOH HOH . G 6 HOH A 52 852 37 HOH HOH . G 6 HOH A 53 853 67 HOH HOH . G 6 HOH A 54 854 54 HOH HOH . G 6 HOH A 55 855 42 HOH HOH . G 6 HOH A 56 856 9 HOH HOH . G 6 HOH A 57 857 57 HOH HOH . G 6 HOH A 58 858 45 HOH HOH . G 6 HOH A 59 859 31 HOH HOH . G 6 HOH A 60 860 66 HOH HOH . G 6 HOH A 61 861 47 HOH HOH . G 6 HOH A 62 862 72 HOH HOH . G 6 HOH A 63 863 49 HOH HOH . G 6 HOH A 64 864 62 HOH HOH . G 6 HOH A 65 865 78 HOH HOH . H 6 HOH B 1 401 73 HOH HOH . H 6 HOH B 2 402 41 HOH HOH . H 6 HOH B 3 403 60 HOH HOH . H 6 HOH B 4 404 11 HOH HOH . H 6 HOH B 5 405 59 HOH HOH . H 6 HOH B 6 406 34 HOH HOH . H 6 HOH B 7 407 17 HOH HOH . H 6 HOH B 8 408 2 HOH HOH . H 6 HOH B 9 409 27 HOH HOH . H 6 HOH B 10 410 20 HOH HOH . H 6 HOH B 11 411 33 HOH HOH . H 6 HOH B 12 412 75 HOH HOH . H 6 HOH B 13 413 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAU 5QH . . . D 4 22.715 -44.417 -10.653 1 41.52 ? CAU 5QH 702 A 1 HETATM 2 C CAV 5QH . . . D 4 22.962 -43.037 -10.212 1 39.42 ? CAV 5QH 702 A 1 HETATM 3 C CAW 5QH . . . D 4 22.95 -42.968 -8.806 1 45.22 ? CAW 5QH 702 A 1 HETATM 4 C CBC 5QH . . . D 4 23.707 -41.975 -8.16 1 45.27 ? CBC 5QH 702 A 1 HETATM 5 C CBB 5QH . . . D 4 23.734 -41.869 -6.769 1 43.85 ? CBB 5QH 702 A 1 HETATM 6 C CBA 5QH . . . D 4 22.977 -42.754 -5.992 1 43.43 ? CBA 5QH 702 A 1 HETATM 7 C CAZ 5QH . . . D 4 22.216 -43.744 -6.616 1 44.37 ? CAZ 5QH 702 A 1 HETATM 8 C CAX 5QH . . . D 4 22.199 -43.861 -8.015 1 46.1 ? CAX 5QH 702 A 1 HETATM 9 C CAY 5QH . . . D 4 21.427 -44.879 -8.58 1 46.56 ? CAY 5QH 702 A 1 HETATM 10 N NAT 5QH . . . D 4 21.478 -44.916 -10.053 1 45.11 ? NAT 5QH 702 A 1 HETATM 11 C CAS 5QH . . . D 4 21.132 -46.259 -10.546 1 47.31 ? CAS 5QH 702 A 1 HETATM 12 C CAB 5QH . . . D 4 19.599 -46.461 -10.395 1 47.65 ? CAB 5QH 702 A 1 HETATM 13 O OAA 5QH . . . D 4 18.931 -45.273 -10.751 1 53.2 ? OAA 5QH 702 A 1 HETATM 14 C CAC 5QH . . . D 4 19.129 -47.63 -11.251 1 43.44 ? CAC 5QH 702 A 1 HETATM 15 N NAD 5QH . . . D 4 19.698 -48.769 -10.527 1 50.28 ? NAD 5QH 702 A 1 HETATM 16 C CAE 5QH . . . D 4 19.062 -49.436 -9.553 1 56.24 ? CAE 5QH 702 A 1 HETATM 17 O OAF 5QH . . . D 4 17.894 -49.211 -9.233 1 56.51 ? OAF 5QH 702 A 1 HETATM 18 C CAG 5QH . . . D 4 19.81 -50.433 -8.898 1 60.78 ? CAG 5QH 702 A 1 HETATM 19 C CAH 5QH . . . D 4 21.192 -50.598 -9.095 1 62.75 ? CAH 5QH 702 A 1 HETATM 20 C CAL 5QH . . . D 4 19.155 -51.272 -7.994 1 61.01 ? CAL 5QH 702 A 1 HETATM 21 C CAK 5QH . . . D 4 19.841 -52.272 -7.305 1 60.25 ? CAK 5QH 702 A 1 HETATM 22 C CAJ 5QH . . . D 4 21.205 -52.433 -7.511 1 65.35 ? CAJ 5QH 702 A 1 HETATM 23 C CAI 5QH . . . D 4 21.883 -51.602 -8.4 1 67.31 ? CAI 5QH 702 A 1 HETATM 24 C CAM 5QH . . . D 4 23.249 -51.808 -8.569 1 74.75 ? CAM 5QH 702 A 1 HETATM 25 N NAN 5QH . . . D 4 23.79 -51.717 -9.809 1 79.7 ? NAN 5QH 702 A 1 HETATM 26 C CAO 5QH . . . D 4 25.17 -51.925 -10.002 1 74.36 ? CAO 5QH 702 A 1 HETATM 27 C CAP 5QH . . . D 4 25.96 -52.238 -8.892 1 75.1 ? CAP 5QH 702 A 1 HETATM 28 C CAQ 5QH . . . D 4 25.411 -52.332 -7.611 1 71.62 ? CAQ 5QH 702 A 1 HETATM 29 C CAR 5QH . . . D 4 24.045 -52.114 -7.447 1 75.97 ? CAR 5QH 702 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 29 #