data_5EMK # _model_server_result.job_id mX6PfxgdfQUezCK1AjFpTg _model_server_result.datetime_utc '2024-12-26 18:23:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5emk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":703}' # _entry.id 5EMK # _exptl.entry_id 5EMK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EMK _cell.length_a 102.79 _cell.length_b 137.75 _cell.length_c 178.52 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EMK _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -137.75 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -137.75 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 208 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 255 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 247 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.065 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 186 n n C1 C2 GOL sing 187 n n C1 H11 GOL sing 188 n n C1 H12 GOL sing 189 n n O1 HO1 GOL sing 190 n n C2 O2 GOL sing 191 n n C2 C3 GOL sing 192 n n C2 H2 GOL sing 193 n n O2 HO2 GOL sing 194 n n C3 O3 GOL sing 195 n n C3 H31 GOL sing 196 n n C3 H32 GOL sing 197 n n O3 HO3 GOL sing 198 n n # _atom_sites.entry_id 5EMK _atom_sites.fract_transf_matrix[1][1] 0.009729 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00726 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005602 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SFG A 1 701 1 SFG SFG . D 4 5QH A 1 702 1 5QH EPZ . E 5 GOL A 1 703 1 GOL GOL . F 5 GOL A 1 704 2 GOL GOL . G 6 HOH A 1 801 51 HOH HOH . G 6 HOH A 2 802 40 HOH HOH . G 6 HOH A 3 803 30 HOH HOH . G 6 HOH A 4 804 14 HOH HOH . G 6 HOH A 5 805 26 HOH HOH . G 6 HOH A 6 806 1 HOH HOH . G 6 HOH A 7 807 52 HOH HOH . G 6 HOH A 8 808 71 HOH HOH . G 6 HOH A 9 809 12 HOH HOH . G 6 HOH A 10 810 29 HOH HOH . G 6 HOH A 11 811 7 HOH HOH . G 6 HOH A 12 812 61 HOH HOH . G 6 HOH A 13 813 3 HOH HOH . G 6 HOH A 14 814 65 HOH HOH . G 6 HOH A 15 815 70 HOH HOH . G 6 HOH A 16 816 15 HOH HOH . G 6 HOH A 17 817 44 HOH HOH . G 6 HOH A 18 818 24 HOH HOH . G 6 HOH A 19 819 69 HOH HOH . G 6 HOH A 20 820 63 HOH HOH . G 6 HOH A 21 821 36 HOH HOH . G 6 HOH A 22 822 46 HOH HOH . G 6 HOH A 23 823 4 HOH HOH . G 6 HOH A 24 824 32 HOH HOH . G 6 HOH A 25 825 21 HOH HOH . G 6 HOH A 26 826 13 HOH HOH . G 6 HOH A 27 827 6 HOH HOH . G 6 HOH A 28 828 55 HOH HOH . G 6 HOH A 29 829 76 HOH HOH . G 6 HOH A 30 830 35 HOH HOH . G 6 HOH A 31 831 38 HOH HOH . G 6 HOH A 32 832 19 HOH HOH . G 6 HOH A 33 833 53 HOH HOH . G 6 HOH A 34 834 16 HOH HOH . G 6 HOH A 35 835 64 HOH HOH . G 6 HOH A 36 836 22 HOH HOH . G 6 HOH A 37 837 28 HOH HOH . G 6 HOH A 38 838 25 HOH HOH . G 6 HOH A 39 839 50 HOH HOH . G 6 HOH A 40 840 39 HOH HOH . G 6 HOH A 41 841 48 HOH HOH . G 6 HOH A 42 842 8 HOH HOH . G 6 HOH A 43 843 43 HOH HOH . G 6 HOH A 44 844 23 HOH HOH . G 6 HOH A 45 845 68 HOH HOH . G 6 HOH A 46 846 5 HOH HOH . G 6 HOH A 47 847 10 HOH HOH . G 6 HOH A 48 848 58 HOH HOH . G 6 HOH A 49 849 77 HOH HOH . G 6 HOH A 50 850 56 HOH HOH . G 6 HOH A 51 851 18 HOH HOH . G 6 HOH A 52 852 37 HOH HOH . G 6 HOH A 53 853 67 HOH HOH . G 6 HOH A 54 854 54 HOH HOH . G 6 HOH A 55 855 42 HOH HOH . G 6 HOH A 56 856 9 HOH HOH . G 6 HOH A 57 857 57 HOH HOH . G 6 HOH A 58 858 45 HOH HOH . G 6 HOH A 59 859 31 HOH HOH . G 6 HOH A 60 860 66 HOH HOH . G 6 HOH A 61 861 47 HOH HOH . G 6 HOH A 62 862 72 HOH HOH . G 6 HOH A 63 863 49 HOH HOH . G 6 HOH A 64 864 62 HOH HOH . G 6 HOH A 65 865 78 HOH HOH . H 6 HOH B 1 401 73 HOH HOH . H 6 HOH B 2 402 41 HOH HOH . H 6 HOH B 3 403 60 HOH HOH . H 6 HOH B 4 404 11 HOH HOH . H 6 HOH B 5 405 59 HOH HOH . H 6 HOH B 6 406 34 HOH HOH . H 6 HOH B 7 407 17 HOH HOH . H 6 HOH B 8 408 2 HOH HOH . H 6 HOH B 9 409 27 HOH HOH . H 6 HOH B 10 410 20 HOH HOH . H 6 HOH B 11 411 33 HOH HOH . H 6 HOH B 12 412 75 HOH HOH . H 6 HOH B 13 413 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 30.425 -80.236 -14.61 1 67.72 ? C1 GOL 703 A 1 HETATM 2 O O1 GOL . . . E 5 29.8 -79.044 -15.112 1 67.46 ? O1 GOL 703 A 1 HETATM 3 C C2 GOL . . . E 5 31.767 -79.877 -13.993 1 67.01 ? C2 GOL 703 A 1 HETATM 4 O O2 GOL . . . E 5 32.402 -78.867 -14.783 1 69.24 ? O2 GOL 703 A 1 HETATM 5 C C3 GOL . . . E 5 31.532 -79.29 -12.612 1 72.53 ? C3 GOL 703 A 1 HETATM 6 O O3 GOL . . . E 5 32.739 -79.405 -11.85 1 77.47 ? O3 GOL 703 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #