data_5EML # _model_server_result.job_id V2KKHQ8tkwbvV7bR-plH9A _model_server_result.datetime_utc '2025-07-14 20:19:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eml # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 5EML # _exptl.entry_id 5EML _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EML _cell.length_a 103.4 _cell.length_b 138.13 _cell.length_c 178.92 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EML _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -138.13 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -138.13 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 208 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 255 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 247 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.035 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 186 n n C1 C2 GOL sing 187 n n C1 H11 GOL sing 188 n n C1 H12 GOL sing 189 n n O1 HO1 GOL sing 190 n n C2 O2 GOL sing 191 n n C2 C3 GOL sing 192 n n C2 H2 GOL sing 193 n n O2 HO2 GOL sing 194 n n C3 O3 GOL sing 195 n n C3 H31 GOL sing 196 n n C3 H32 GOL sing 197 n n O3 HO3 GOL sing 198 n n # _atom_sites.entry_id 5EML _atom_sites.fract_transf_matrix[1][1] 0.009671 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00724 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005589 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SAM A 1 701 1 SAM SAM . D 4 5QK A 1 702 1 5QK EPZ . E 5 GOL A 1 703 1 GOL GOL . F 5 GOL B 1 401 2 GOL GOL . G 6 HOH A 1 801 109 HOH HOH . G 6 HOH A 2 802 22 HOH HOH . G 6 HOH A 3 803 64 HOH HOH . G 6 HOH A 4 804 60 HOH HOH . G 6 HOH A 5 805 46 HOH HOH . G 6 HOH A 6 806 104 HOH HOH . G 6 HOH A 7 807 53 HOH HOH . G 6 HOH A 8 808 117 HOH HOH . G 6 HOH A 9 809 54 HOH HOH . G 6 HOH A 10 810 9 HOH HOH . G 6 HOH A 11 811 12 HOH HOH . G 6 HOH A 12 812 6 HOH HOH . G 6 HOH A 13 813 34 HOH HOH . G 6 HOH A 14 814 44 HOH HOH . G 6 HOH A 15 815 74 HOH HOH . G 6 HOH A 16 816 65 HOH HOH . G 6 HOH A 17 817 66 HOH HOH . G 6 HOH A 18 818 131 HOH HOH . G 6 HOH A 19 819 71 HOH HOH . G 6 HOH A 20 820 80 HOH HOH . G 6 HOH A 21 821 10 HOH HOH . G 6 HOH A 22 822 19 HOH HOH . G 6 HOH A 23 823 49 HOH HOH . G 6 HOH A 24 824 26 HOH HOH . G 6 HOH A 25 825 91 HOH HOH . G 6 HOH A 26 826 67 HOH HOH . G 6 HOH A 27 827 61 HOH HOH . G 6 HOH A 28 828 11 HOH HOH . G 6 HOH A 29 829 15 HOH HOH . G 6 HOH A 30 830 28 HOH HOH . G 6 HOH A 31 831 8 HOH HOH . G 6 HOH A 32 832 130 HOH HOH . G 6 HOH A 33 833 2 HOH HOH . G 6 HOH A 34 834 96 HOH HOH . G 6 HOH A 35 835 55 HOH HOH . G 6 HOH A 36 836 4 HOH HOH . G 6 HOH A 37 837 81 HOH HOH . G 6 HOH A 38 838 20 HOH HOH . G 6 HOH A 39 839 103 HOH HOH . G 6 HOH A 40 840 21 HOH HOH . G 6 HOH A 41 841 78 HOH HOH . G 6 HOH A 42 842 122 HOH HOH . G 6 HOH A 43 843 135 HOH HOH . G 6 HOH A 44 844 42 HOH HOH . G 6 HOH A 45 845 119 HOH HOH . G 6 HOH A 46 846 70 HOH HOH . G 6 HOH A 47 847 39 HOH HOH . G 6 HOH A 48 848 121 HOH HOH . G 6 HOH A 49 849 56 HOH HOH . G 6 HOH A 50 850 98 HOH HOH . G 6 HOH A 51 851 138 HOH HOH . G 6 HOH A 52 852 88 HOH HOH . G 6 HOH A 53 853 59 HOH HOH . G 6 HOH A 54 854 29 HOH HOH . G 6 HOH A 55 855 1 HOH HOH . G 6 HOH A 56 856 17 HOH HOH . G 6 HOH A 57 857 5 HOH HOH . G 6 HOH A 58 858 41 HOH HOH . G 6 HOH A 59 859 101 HOH HOH . G 6 HOH A 60 860 36 HOH HOH . G 6 HOH A 61 861 87 HOH HOH . G 6 HOH A 62 862 47 HOH HOH . G 6 HOH A 63 863 43 HOH HOH . G 6 HOH A 64 864 79 HOH HOH . G 6 HOH A 65 865 48 HOH HOH . G 6 HOH A 66 866 30 HOH HOH . G 6 HOH A 67 867 89 HOH HOH . G 6 HOH A 68 868 75 HOH HOH . G 6 HOH A 69 869 95 HOH HOH . G 6 HOH A 70 870 108 HOH HOH . G 6 HOH A 71 871 136 HOH HOH . G 6 HOH A 72 872 127 HOH HOH . G 6 HOH A 73 873 33 HOH HOH . G 6 HOH A 74 874 90 HOH HOH . G 6 HOH A 75 875 18 HOH HOH . G 6 HOH A 76 876 110 HOH HOH . G 6 HOH A 77 877 92 HOH HOH . G 6 HOH A 78 878 85 HOH HOH . G 6 HOH A 79 879 50 HOH HOH . G 6 HOH A 80 880 112 HOH HOH . G 6 HOH A 81 881 38 HOH HOH . G 6 HOH A 82 882 77 HOH HOH . G 6 HOH A 83 883 35 HOH HOH . G 6 HOH A 84 884 116 HOH HOH . G 6 HOH A 85 885 83 HOH HOH . G 6 HOH A 86 886 86 HOH HOH . G 6 HOH A 87 887 51 HOH HOH . G 6 HOH A 88 888 99 HOH HOH . G 6 HOH A 89 889 106 HOH HOH . G 6 HOH A 90 890 133 HOH HOH . G 6 HOH A 91 891 23 HOH HOH . G 6 HOH A 92 892 73 HOH HOH . G 6 HOH A 93 893 105 HOH HOH . G 6 HOH A 94 894 32 HOH HOH . G 6 HOH A 95 895 129 HOH HOH . G 6 HOH A 96 896 25 HOH HOH . G 6 HOH A 97 897 118 HOH HOH . G 6 HOH A 98 898 72 HOH HOH . G 6 HOH A 99 899 84 HOH HOH . G 6 HOH A 100 900 139 HOH HOH . G 6 HOH A 101 901 107 HOH HOH . G 6 HOH A 102 902 97 HOH HOH . G 6 HOH A 103 903 128 HOH HOH . G 6 HOH A 104 904 111 HOH HOH . G 6 HOH A 105 905 114 HOH HOH . G 6 HOH A 106 906 102 HOH HOH . G 6 HOH A 107 907 62 HOH HOH . G 6 HOH A 108 908 52 HOH HOH . G 6 HOH A 109 909 126 HOH HOH . G 6 HOH A 110 910 100 HOH HOH . G 6 HOH A 111 911 125 HOH HOH . G 6 HOH A 112 912 115 HOH HOH . H 6 HOH B 1 501 57 HOH HOH . H 6 HOH B 2 502 123 HOH HOH . H 6 HOH B 3 503 14 HOH HOH . H 6 HOH B 4 504 45 HOH HOH . H 6 HOH B 5 505 7 HOH HOH . H 6 HOH B 6 506 63 HOH HOH . H 6 HOH B 7 507 134 HOH HOH . H 6 HOH B 8 508 58 HOH HOH . H 6 HOH B 9 509 69 HOH HOH . H 6 HOH B 10 510 40 HOH HOH . H 6 HOH B 11 511 93 HOH HOH . H 6 HOH B 12 512 13 HOH HOH . H 6 HOH B 13 513 76 HOH HOH . H 6 HOH B 14 514 16 HOH HOH . H 6 HOH B 15 515 31 HOH HOH . H 6 HOH B 16 516 3 HOH HOH . H 6 HOH B 17 517 140 HOH HOH . H 6 HOH B 18 518 27 HOH HOH . H 6 HOH B 19 519 120 HOH HOH . H 6 HOH B 20 520 24 HOH HOH . H 6 HOH B 21 521 68 HOH HOH . H 6 HOH B 22 522 132 HOH HOH . H 6 HOH B 23 523 94 HOH HOH . H 6 HOH B 24 524 82 HOH HOH . H 6 HOH B 25 525 37 HOH HOH . H 6 HOH B 26 526 124 HOH HOH . H 6 HOH B 27 527 113 HOH HOH . H 6 HOH B 28 528 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 11.155 -101.004 -45.029 1 66.71 ? C1 GOL 401 B 1 HETATM 2 O O1 GOL . . . F 5 10.019 -101.883 -45.004 1 67.89 ? O1 GOL 401 B 1 HETATM 3 C C2 GOL . . . F 5 11.663 -100.867 -43.596 1 65.75 ? C2 GOL 401 B 1 HETATM 4 O O2 GOL . . . F 5 13.077 -100.624 -43.519 1 60.59 ? O2 GOL 401 B 1 HETATM 5 C C3 GOL . . . F 5 10.929 -99.704 -42.964 1 60.66 ? C3 GOL 401 B 1 HETATM 6 O O3 GOL . . . F 5 10.722 -100.09 -41.603 1 61.14 ? O3 GOL 401 B 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #