data_5EMM # _model_server_result.job_id SpyyHpf5elmnT3R3QAE1nQ _model_server_result.datetime_utc '2024-12-27 02:34:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5emm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 5EMM # _exptl.entry_id 5EMM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 409.521 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[(2~{S})-3-(3,4-dihydro-1~{H}-isoquinolin-2-yl)-2-oxidanyl-propyl]-3-(oxan-4-ylamino)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EMM _cell.length_a 103.53 _cell.length_b 138.18 _cell.length_c 179.21 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EMM _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -138.18 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -138.18 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 208 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 255 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 247 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.05 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H31 N3 O3' _chem_comp.formula_weight 409.521 _chem_comp.id 5QL _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[(2~{S})-3-(3,4-dihydro-1~{H}-isoquinolin-2-yl)-2-oxidanyl-propyl]-3-(oxan-4-ylamino)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAF CAE 5QL doub 1 n n CAL CAM 5QL sing 2 n n CAL CAK 5QL sing 3 n n CAM OAN 5QL sing 4 n n NAJ CAK 5QL sing 5 n n NAJ CAI 5QL sing 6 n n CAH CAI 5QL doub 7 n y CAH CAG 5QL sing 8 n y CAK CAP 5QL sing 9 n n CAE CAG 5QL sing 10 n n CAE NAD 5QL sing 11 n n CAI CAQ 5QL sing 12 n y CAG CAS 5QL doub 13 n y CAC NAD 5QL sing 14 n n CAC CAB 5QL sing 15 n n OAN CAO 5QL sing 16 n n CAT CAB 5QL sing 17 n n CAT NAU 5QL sing 18 n n CAV CAW 5QL sing 19 n n CAV NAU 5QL sing 20 n n OAA CAB 5QL sing 21 n n CAW CAX 5QL sing 22 n n NAU CAZ 5QL sing 23 n n CAP CAO 5QL sing 24 n n CAQ CAR 5QL doub 25 n y CAS CAR 5QL sing 26 n y CAX CBD 5QL doub 27 n y CAX CAY 5QL sing 28 n y CAZ CAY 5QL sing 29 n n CBD CBC 5QL sing 30 n y CAY CBA 5QL doub 31 n y CBC CBB 5QL doub 32 n y CBA CBB 5QL sing 33 n y CAV H1 5QL sing 34 n n CAV H2 5QL sing 35 n n CAW H3 5QL sing 36 n n CAW H4 5QL sing 37 n n CBD H5 5QL sing 38 n n CBC H6 5QL sing 39 n n CBB H7 5QL sing 40 n n CBA H8 5QL sing 41 n n CAZ H9 5QL sing 42 n n CAZ H10 5QL sing 43 n n CAT H12 5QL sing 44 n n CAT H13 5QL sing 45 n n CAB H14 5QL sing 46 n n OAA H15 5QL sing 47 n n CAC H16 5QL sing 48 n n CAC H17 5QL sing 49 n n NAD H18 5QL sing 50 n n CAH H19 5QL sing 51 n n CAS H20 5QL sing 52 n n CAR H21 5QL sing 53 n n CAQ H22 5QL sing 54 n n NAJ H23 5QL sing 55 n n CAK H24 5QL sing 56 n n CAL H25 5QL sing 57 n n CAL H26 5QL sing 58 n n CAM H27 5QL sing 59 n n CAM H28 5QL sing 60 n n CAO H29 5QL sing 61 n n CAO H30 5QL sing 62 n n CAP H31 5QL sing 63 n n CAP H32 5QL sing 64 n n # _atom_sites.entry_id 5EMM _atom_sites.fract_transf_matrix[1][1] 0.009659 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007237 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00558 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SFG A 1 701 1 SFG SFG . D 4 5QL A 1 702 1 5QL EPZ . E 5 GOL A 1 703 1 GOL GOL . F 5 GOL A 1 704 2 GOL GOL . G 6 HOH A 1 801 59 HOH HOH . G 6 HOH A 2 802 56 HOH HOH . G 6 HOH A 3 803 65 HOH HOH . G 6 HOH A 4 804 25 HOH HOH . G 6 HOH A 5 805 2 HOH HOH . G 6 HOH A 6 806 61 HOH HOH . G 6 HOH A 7 807 48 HOH HOH . G 6 HOH A 8 808 36 HOH HOH . G 6 HOH A 9 809 46 HOH HOH . G 6 HOH A 10 810 47 HOH HOH . G 6 HOH A 11 811 50 HOH HOH . G 6 HOH A 12 812 44 HOH HOH . G 6 HOH A 13 813 62 HOH HOH . G 6 HOH A 14 814 4 HOH HOH . G 6 HOH A 15 815 42 HOH HOH . G 6 HOH A 16 816 28 HOH HOH . G 6 HOH A 17 817 39 HOH HOH . G 6 HOH A 18 818 11 HOH HOH . G 6 HOH A 19 819 8 HOH HOH . G 6 HOH A 20 820 23 HOH HOH . G 6 HOH A 21 821 5 HOH HOH . G 6 HOH A 22 822 29 HOH HOH . G 6 HOH A 23 823 19 HOH HOH . G 6 HOH A 24 824 26 HOH HOH . G 6 HOH A 25 825 3 HOH HOH . G 6 HOH A 26 826 51 HOH HOH . G 6 HOH A 27 827 12 HOH HOH . G 6 HOH A 28 828 9 HOH HOH . G 6 HOH A 29 829 7 HOH HOH . G 6 HOH A 30 830 52 HOH HOH . G 6 HOH A 31 831 32 HOH HOH . G 6 HOH A 32 832 30 HOH HOH . G 6 HOH A 33 833 17 HOH HOH . G 6 HOH A 34 834 1 HOH HOH . G 6 HOH A 35 835 24 HOH HOH . G 6 HOH A 36 836 16 HOH HOH . G 6 HOH A 37 837 13 HOH HOH . G 6 HOH A 38 838 14 HOH HOH . G 6 HOH A 39 839 31 HOH HOH . G 6 HOH A 40 840 34 HOH HOH . G 6 HOH A 41 841 21 HOH HOH . G 6 HOH A 42 842 15 HOH HOH . G 6 HOH A 43 843 22 HOH HOH . G 6 HOH A 44 844 68 HOH HOH . G 6 HOH A 45 845 41 HOH HOH . G 6 HOH A 46 846 49 HOH HOH . G 6 HOH A 47 847 58 HOH HOH . G 6 HOH A 48 848 27 HOH HOH . G 6 HOH A 49 849 37 HOH HOH . G 6 HOH A 50 850 57 HOH HOH . G 6 HOH A 51 851 64 HOH HOH . G 6 HOH A 52 852 63 HOH HOH . G 6 HOH A 53 853 53 HOH HOH . G 6 HOH A 54 854 54 HOH HOH . G 6 HOH A 55 855 45 HOH HOH . H 6 HOH B 1 401 67 HOH HOH . H 6 HOH B 2 402 18 HOH HOH . H 6 HOH B 3 403 6 HOH HOH . H 6 HOH B 4 404 20 HOH HOH . H 6 HOH B 5 405 43 HOH HOH . H 6 HOH B 6 406 60 HOH HOH . H 6 HOH B 7 407 35 HOH HOH . H 6 HOH B 8 408 38 HOH HOH . H 6 HOH B 9 409 66 HOH HOH . H 6 HOH B 10 410 33 HOH HOH . H 6 HOH B 11 411 40 HOH HOH . H 6 HOH B 12 412 10 HOH HOH . H 6 HOH B 13 413 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAV 5QL . . . D 4 22.907 -44.673 -10.676 1 40.19 ? CAV 5QL 702 A 1 HETATM 2 C CAW 5QL . . . D 4 23.135 -43.258 -10.281 1 38.1 ? CAW 5QL 702 A 1 HETATM 3 C CAX 5QL . . . D 4 23.04 -43.165 -8.897 1 41.74 ? CAX 5QL 702 A 1 HETATM 4 C CBD 5QL . . . D 4 23.773 -42.165 -8.235 1 44.06 ? CBD 5QL 702 A 1 HETATM 5 C CBC 5QL . . . D 4 23.716 -42.057 -6.84 1 41.66 ? CBC 5QL 702 A 1 HETATM 6 C CBB 5QL . . . D 4 22.925 -42.946 -6.095 1 42.52 ? CBB 5QL 702 A 1 HETATM 7 C CBA 5QL . . . D 4 22.194 -43.944 -6.745 1 40.76 ? CBA 5QL 702 A 1 HETATM 8 C CAY 5QL . . . D 4 22.248 -44.055 -8.143 1 40.64 ? CAY 5QL 702 A 1 HETATM 9 C CAZ 5QL . . . D 4 21.521 -45.087 -8.738 1 38.33 ? CAZ 5QL 702 A 1 HETATM 10 N NAU 5QL . . . D 4 21.566 -45.074 -10.209 1 36.36 ? NAU 5QL 702 A 1 HETATM 11 C CAT 5QL . . . D 4 21.219 -46.426 -10.686 1 35.12 ? CAT 5QL 702 A 1 HETATM 12 C CAB 5QL . . . D 4 19.758 -46.841 -10.259 1 38.08 ? CAB 5QL 702 A 1 HETATM 13 O OAA 5QL . . . D 4 18.846 -45.773 -10.442 1 32.98 ? OAA 5QL 702 A 1 HETATM 14 C CAC 5QL . . . D 4 19.302 -48.107 -11.005 1 37.07 ? CAC 5QL 702 A 1 HETATM 15 N NAD 5QL . . . D 4 20.39 -49.056 -10.71 1 37.9 ? NAD 5QL 702 A 1 HETATM 16 C CAE 5QL . . . D 4 21.191 -49.575 -11.649 1 38.38 ? CAE 5QL 702 A 1 HETATM 17 O OAF 5QL . . . D 4 21.054 -49.365 -12.86 1 35.77 ? OAF 5QL 702 A 1 HETATM 18 C CAG 5QL . . . D 4 22.229 -50.376 -11.147 1 43.02 ? CAG 5QL 702 A 1 HETATM 19 C CAH 5QL . . . D 4 23.447 -50.437 -11.827 1 44.33 ? CAH 5QL 702 A 1 HETATM 20 C CAS 5QL . . . D 4 22.082 -51.09 -9.942 1 45.2 ? CAS 5QL 702 A 1 HETATM 21 C CAR 5QL . . . D 4 23.119 -51.877 -9.432 1 44.72 ? CAR 5QL 702 A 1 HETATM 22 C CAQ 5QL . . . D 4 24.314 -51.941 -10.14 1 48.5 ? CAQ 5QL 702 A 1 HETATM 23 C CAI 5QL . . . D 4 24.498 -51.21 -11.321 1 49.52 ? CAI 5QL 702 A 1 HETATM 24 N NAJ 5QL . . . D 4 25.622 -51.268 -12.058 1 54.12 ? NAJ 5QL 702 A 1 HETATM 25 C CAK 5QL . . . D 4 27.058 -51.217 -11.661 1 59.34 ? CAK 5QL 702 A 1 HETATM 26 C CAL 5QL . . . D 4 27.892 -52.144 -12.563 1 57.73 ? CAL 5QL 702 A 1 HETATM 27 C CAM 5QL . . . D 4 29.358 -51.825 -12.307 1 60.51 ? CAM 5QL 702 A 1 HETATM 28 O OAN 5QL . . . D 4 29.679 -52.043 -10.917 1 58.48 ? OAN 5QL 702 A 1 HETATM 29 C CAO 5QL . . . D 4 28.889 -51.277 -9.994 1 57.84 ? CAO 5QL 702 A 1 HETATM 30 C CAP 5QL . . . D 4 27.384 -51.563 -10.207 1 59.93 ? CAP 5QL 702 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #