data_5EN3 # _model_server_result.job_id CRhTTKZJEhYm1hPVAP0arg _model_server_result.datetime_utc '2025-03-04 07:41:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5en3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5EN3 # _exptl.entry_id 5EN3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EN3 _cell.length_a 43.04 _cell.length_b 85.625 _cell.length_c 64.23 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EN3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 99 A ASP 99 1_555 D NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc2 D NA NA . A NA 202 1_555 G O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc3 D NA NA . A NA 202 1_555 G O HOH . A HOH 310 4_456 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc4 D NA NA . A NA 202 1_555 G O HOH . A HOH 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc5 D NA NA . A NA 202 1_555 G O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.02 ? metalc ? metalc6 D NA NA . A NA 202 1_555 G O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5EN3 _atom_sites.fract_transf_matrix[1][1] 0.023234 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011679 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015569 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 7LU A 1 201 2 7LU 7LU . D 3 NA A 1 202 1 NA NA . E 2 7LU B 1 201 1 7LU 7LU . F 4 GOL B 1 202 1 GOL GOL . G 5 HOH A 1 301 218 HOH HOH . G 5 HOH A 2 302 129 HOH HOH . G 5 HOH A 3 303 112 HOH HOH . G 5 HOH A 4 304 3 HOH HOH . G 5 HOH A 5 305 179 HOH HOH . G 5 HOH A 6 306 189 HOH HOH . G 5 HOH A 7 307 132 HOH HOH . G 5 HOH A 8 308 38 HOH HOH . G 5 HOH A 9 309 105 HOH HOH . G 5 HOH A 10 310 210 HOH HOH . G 5 HOH A 11 311 119 HOH HOH . G 5 HOH A 12 312 1 HOH HOH . G 5 HOH A 13 313 69 HOH HOH . G 5 HOH A 14 314 127 HOH HOH . G 5 HOH A 15 315 169 HOH HOH . G 5 HOH A 16 316 111 HOH HOH . G 5 HOH A 17 317 135 HOH HOH . G 5 HOH A 18 318 44 HOH HOH . G 5 HOH A 19 319 219 HOH HOH . G 5 HOH A 20 320 108 HOH HOH . G 5 HOH A 21 321 217 HOH HOH . G 5 HOH A 22 322 96 HOH HOH . G 5 HOH A 23 323 199 HOH HOH . G 5 HOH A 24 324 171 HOH HOH . G 5 HOH A 25 325 201 HOH HOH . G 5 HOH A 26 326 187 HOH HOH . G 5 HOH A 27 327 56 HOH HOH . G 5 HOH A 28 328 206 HOH HOH . G 5 HOH A 29 329 52 HOH HOH . G 5 HOH A 30 330 76 HOH HOH . G 5 HOH A 31 331 54 HOH HOH . G 5 HOH A 32 332 154 HOH HOH . G 5 HOH A 33 333 14 HOH HOH . G 5 HOH A 34 334 17 HOH HOH . G 5 HOH A 35 335 18 HOH HOH . G 5 HOH A 36 336 70 HOH HOH . G 5 HOH A 37 337 158 HOH HOH . G 5 HOH A 38 338 93 HOH HOH . G 5 HOH A 39 339 48 HOH HOH . G 5 HOH A 40 340 5 HOH HOH . G 5 HOH A 41 341 92 HOH HOH . G 5 HOH A 42 342 78 HOH HOH . G 5 HOH A 43 343 61 HOH HOH . G 5 HOH A 44 344 97 HOH HOH . G 5 HOH A 45 345 198 HOH HOH . G 5 HOH A 46 346 59 HOH HOH . G 5 HOH A 47 347 32 HOH HOH . G 5 HOH A 48 348 46 HOH HOH . G 5 HOH A 49 349 45 HOH HOH . G 5 HOH A 50 350 133 HOH HOH . G 5 HOH A 51 351 16 HOH HOH . G 5 HOH A 52 352 137 HOH HOH . G 5 HOH A 53 353 72 HOH HOH . G 5 HOH A 54 354 7 HOH HOH . G 5 HOH A 55 355 33 HOH HOH . G 5 HOH A 56 356 9 HOH HOH . G 5 HOH A 57 357 197 HOH HOH . G 5 HOH A 58 358 36 HOH HOH . G 5 HOH A 59 359 164 HOH HOH . G 5 HOH A 60 360 107 HOH HOH . G 5 HOH A 61 361 49 HOH HOH . G 5 HOH A 62 362 34 HOH HOH . G 5 HOH A 63 363 26 HOH HOH . G 5 HOH A 64 364 67 HOH HOH . G 5 HOH A 65 365 202 HOH HOH . G 5 HOH A 66 366 66 HOH HOH . G 5 HOH A 67 367 128 HOH HOH . G 5 HOH A 68 368 88 HOH HOH . G 5 HOH A 69 369 85 HOH HOH . G 5 HOH A 70 370 79 HOH HOH . G 5 HOH A 71 371 20 HOH HOH . G 5 HOH A 72 372 80 HOH HOH . G 5 HOH A 73 373 139 HOH HOH . G 5 HOH A 74 374 60 HOH HOH . G 5 HOH A 75 375 143 HOH HOH . G 5 HOH A 76 376 87 HOH HOH . G 5 HOH A 77 377 27 HOH HOH . G 5 HOH A 78 378 53 HOH HOH . G 5 HOH A 79 379 40 HOH HOH . G 5 HOH A 80 380 113 HOH HOH . G 5 HOH A 81 381 209 HOH HOH . G 5 HOH A 82 382 81 HOH HOH . G 5 HOH A 83 383 165 HOH HOH . G 5 HOH A 84 384 41 HOH HOH . G 5 HOH A 85 385 126 HOH HOH . G 5 HOH A 86 386 100 HOH HOH . G 5 HOH A 87 387 21 HOH HOH . G 5 HOH A 88 388 193 HOH HOH . G 5 HOH A 89 389 151 HOH HOH . G 5 HOH A 90 390 57 HOH HOH . G 5 HOH A 91 391 196 HOH HOH . G 5 HOH A 92 392 191 HOH HOH . G 5 HOH A 93 393 153 HOH HOH . G 5 HOH A 94 394 116 HOH HOH . G 5 HOH A 95 395 208 HOH HOH . G 5 HOH A 96 396 106 HOH HOH . G 5 HOH A 97 397 183 HOH HOH . G 5 HOH A 98 398 205 HOH HOH . G 5 HOH A 99 399 62 HOH HOH . G 5 HOH A 100 400 124 HOH HOH . G 5 HOH A 101 401 145 HOH HOH . G 5 HOH A 102 402 174 HOH HOH . G 5 HOH A 103 403 213 HOH HOH . G 5 HOH A 104 404 188 HOH HOH . G 5 HOH A 105 405 39 HOH HOH . G 5 HOH A 106 406 168 HOH HOH . G 5 HOH A 107 407 141 HOH HOH . G 5 HOH A 108 408 144 HOH HOH . G 5 HOH A 109 409 157 HOH HOH . G 5 HOH A 110 410 192 HOH HOH . G 5 HOH A 111 411 170 HOH HOH . G 5 HOH A 112 412 216 HOH HOH . G 5 HOH A 113 413 82 HOH HOH . G 5 HOH A 114 414 120 HOH HOH . G 5 HOH A 115 415 71 HOH HOH . G 5 HOH A 116 416 195 HOH HOH . G 5 HOH A 117 417 142 HOH HOH . G 5 HOH A 118 418 149 HOH HOH . G 5 HOH A 119 419 186 HOH HOH . G 5 HOH A 120 420 102 HOH HOH . G 5 HOH A 121 421 190 HOH HOH . G 5 HOH A 122 422 121 HOH HOH . G 5 HOH A 123 423 114 HOH HOH . H 5 HOH B 1 301 173 HOH HOH . H 5 HOH B 2 302 221 HOH HOH . H 5 HOH B 3 303 200 HOH HOH . H 5 HOH B 4 304 147 HOH HOH . H 5 HOH B 5 305 162 HOH HOH . H 5 HOH B 6 306 220 HOH HOH . H 5 HOH B 7 307 101 HOH HOH . H 5 HOH B 8 308 28 HOH HOH . H 5 HOH B 9 309 140 HOH HOH . H 5 HOH B 10 310 83 HOH HOH . H 5 HOH B 11 311 117 HOH HOH . H 5 HOH B 12 312 167 HOH HOH . H 5 HOH B 13 313 166 HOH HOH . H 5 HOH B 14 314 2 HOH HOH . H 5 HOH B 15 315 84 HOH HOH . H 5 HOH B 16 316 63 HOH HOH . H 5 HOH B 17 317 25 HOH HOH . H 5 HOH B 18 318 138 HOH HOH . H 5 HOH B 19 319 150 HOH HOH . H 5 HOH B 20 320 73 HOH HOH . H 5 HOH B 21 321 215 HOH HOH . H 5 HOH B 22 322 155 HOH HOH . H 5 HOH B 23 323 19 HOH HOH . H 5 HOH B 24 324 178 HOH HOH . H 5 HOH B 25 325 42 HOH HOH . H 5 HOH B 26 326 136 HOH HOH . H 5 HOH B 27 327 181 HOH HOH . H 5 HOH B 28 328 15 HOH HOH . H 5 HOH B 29 329 89 HOH HOH . H 5 HOH B 30 330 185 HOH HOH . H 5 HOH B 31 331 122 HOH HOH . H 5 HOH B 32 332 10 HOH HOH . H 5 HOH B 33 333 211 HOH HOH . H 5 HOH B 34 334 6 HOH HOH . H 5 HOH B 35 335 91 HOH HOH . H 5 HOH B 36 336 203 HOH HOH . H 5 HOH B 37 337 109 HOH HOH . H 5 HOH B 38 338 37 HOH HOH . H 5 HOH B 39 339 123 HOH HOH . H 5 HOH B 40 340 94 HOH HOH . H 5 HOH B 41 341 43 HOH HOH . H 5 HOH B 42 342 148 HOH HOH . H 5 HOH B 43 343 24 HOH HOH . H 5 HOH B 44 344 8 HOH HOH . H 5 HOH B 45 345 176 HOH HOH . H 5 HOH B 46 346 55 HOH HOH . H 5 HOH B 47 347 13 HOH HOH . H 5 HOH B 48 348 11 HOH HOH . H 5 HOH B 49 349 77 HOH HOH . H 5 HOH B 50 350 30 HOH HOH . H 5 HOH B 51 351 95 HOH HOH . H 5 HOH B 52 352 4 HOH HOH . H 5 HOH B 53 353 172 HOH HOH . H 5 HOH B 54 354 68 HOH HOH . H 5 HOH B 55 355 207 HOH HOH . H 5 HOH B 56 356 29 HOH HOH . H 5 HOH B 57 357 159 HOH HOH . H 5 HOH B 58 358 99 HOH HOH . H 5 HOH B 59 359 31 HOH HOH . H 5 HOH B 60 360 212 HOH HOH . H 5 HOH B 61 361 156 HOH HOH . H 5 HOH B 62 362 152 HOH HOH . H 5 HOH B 63 363 47 HOH HOH . H 5 HOH B 64 364 184 HOH HOH . H 5 HOH B 65 365 214 HOH HOH . H 5 HOH B 66 366 118 HOH HOH . H 5 HOH B 67 367 35 HOH HOH . H 5 HOH B 68 368 58 HOH HOH . H 5 HOH B 69 369 75 HOH HOH . H 5 HOH B 70 370 86 HOH HOH . H 5 HOH B 71 371 12 HOH HOH . H 5 HOH B 72 372 175 HOH HOH . H 5 HOH B 73 373 23 HOH HOH . H 5 HOH B 74 374 64 HOH HOH . H 5 HOH B 75 375 22 HOH HOH . H 5 HOH B 76 376 51 HOH HOH . H 5 HOH B 77 377 180 HOH HOH . H 5 HOH B 78 378 65 HOH HOH . H 5 HOH B 79 379 131 HOH HOH . H 5 HOH B 80 380 115 HOH HOH . H 5 HOH B 81 381 74 HOH HOH . H 5 HOH B 82 382 177 HOH HOH . H 5 HOH B 83 383 98 HOH HOH . H 5 HOH B 84 384 182 HOH HOH . H 5 HOH B 85 385 204 HOH HOH . H 5 HOH B 86 386 134 HOH HOH . H 5 HOH B 87 387 194 HOH HOH . H 5 HOH B 88 388 161 HOH HOH . H 5 HOH B 89 389 130 HOH HOH . H 5 HOH B 90 390 110 HOH HOH . H 5 HOH B 91 391 160 HOH HOH . H 5 HOH B 92 392 104 HOH HOH . H 5 HOH B 93 393 103 HOH HOH . H 5 HOH B 94 394 50 HOH HOH . H 5 HOH B 95 395 146 HOH HOH . H 5 HOH B 96 396 163 HOH HOH . H 5 HOH B 97 397 90 HOH HOH . H 5 HOH B 98 398 125 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -22.16 _atom_site.Cartn_y 17.706 _atom_site.Cartn_z 27.502 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 85.16 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #