data_5EN4
#
_model_server_result.job_id            m9Gtvy2cmey11B9vjgxdWQ 
_model_server_result.datetime_utc      '2024-12-21 14:11:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5en4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    5EN4 
#
_exptl.entry_id    5EN4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5EN4 
_cell.length_a            91.724 
_cell.length_b            91.724 
_cell.length_c            135.022 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5EN4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 91.724 0 0 
3 'crystal symmetry operation' 5_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 91.724 0 0 
4 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLU 50 A GLU 50 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc2 A O LEU 53 A LEU 53 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc3 A O PRO 54 A PRO 54 1_555 D NA NA . A NA 303 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.491 ? 
metalc ? metalc4 A O ALA 56 A ALA 56 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc5 D NA NA . A NA 303 1_555 E O HOH . A HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 275 n n 
PA O2A NAD sing 276 n n 
PA O5B NAD sing 277 n n 
PA O3 NAD sing 278 n n 
O2A HOA2 NAD sing 279 n n 
O5B C5B NAD sing 280 n n 
C5B C4B NAD sing 281 n n 
C5B H51A NAD sing 282 n n 
C5B H52A NAD sing 283 n n 
C4B O4B NAD sing 284 n n 
C4B C3B NAD sing 285 n n 
C4B H4B NAD sing 286 n n 
O4B C1B NAD sing 287 n n 
C3B O3B NAD sing 288 n n 
C3B C2B NAD sing 289 n n 
C3B H3B NAD sing 290 n n 
O3B HO3A NAD sing 291 n n 
C2B O2B NAD sing 292 n n 
C2B C1B NAD sing 293 n n 
C2B H2B NAD sing 294 n n 
O2B HO2A NAD sing 295 n n 
C1B N9A NAD sing 296 n n 
C1B H1B NAD sing 297 n n 
N9A C8A NAD sing 298 n y 
N9A C4A NAD sing 299 n y 
C8A N7A NAD doub 300 n y 
C8A H8A NAD sing 301 n n 
N7A C5A NAD sing 302 n y 
C5A C6A NAD sing 303 n y 
C5A C4A NAD doub 304 n y 
C6A N6A NAD sing 305 n n 
C6A N1A NAD doub 306 n y 
N6A H61A NAD sing 307 n n 
N6A H62A NAD sing 308 n n 
N1A C2A NAD sing 309 n y 
C2A N3A NAD doub 310 n y 
C2A H2A NAD sing 311 n n 
N3A C4A NAD sing 312 n y 
O3 PN NAD sing 313 n n 
PN O1N NAD doub 314 n n 
PN O2N NAD sing 315 n n 
PN O5D NAD sing 316 n n 
O5D C5D NAD sing 317 n n 
C5D C4D NAD sing 318 n n 
C5D H51N NAD sing 319 n n 
C5D H52N NAD sing 320 n n 
C4D O4D NAD sing 321 n n 
C4D C3D NAD sing 322 n n 
C4D H4D NAD sing 323 n n 
O4D C1D NAD sing 324 n n 
C3D O3D NAD sing 325 n n 
C3D C2D NAD sing 326 n n 
C3D H3D NAD sing 327 n n 
O3D HO3N NAD sing 328 n n 
C2D O2D NAD sing 329 n n 
C2D C1D NAD sing 330 n n 
C2D H2D NAD sing 331 n n 
O2D HO2N NAD sing 332 n n 
C1D N1N NAD sing 333 n n 
C1D H1D NAD sing 334 n n 
N1N C2N NAD sing 335 n y 
N1N C6N NAD doub 336 n y 
C2N C3N NAD doub 337 n y 
C2N H2N NAD sing 338 n n 
C3N C7N NAD sing 339 n n 
C3N C4N NAD sing 340 n y 
C7N O7N NAD doub 341 n n 
C7N N7N NAD sing 342 n n 
N7N H71N NAD sing 343 n n 
N7N H72N NAD sing 344 n n 
C4N C5N NAD doub 345 n y 
C4N H4N NAD sing 346 n n 
C5N C6N NAD sing 347 n y 
C5N H5N NAD sing 348 n n 
C6N H6N NAD sing 349 n n 
#
_atom_sites.entry_id                     5EN4 
_atom_sites.fract_transf_matrix[1][1]    0.010902 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010902 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007406 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAD A 1 301 2 NAD NAD . 
C 3 5Q6 A 1 302 1 5Q6 F77 . 
D 4 NA A 1 303 1 NA NA . 
E 5 HOH A 1 401 65 HOH HOH . 
E 5 HOH A 2 402 67 HOH HOH . 
E 5 HOH A 3 403 27 HOH HOH . 
E 5 HOH A 4 404 76 HOH HOH . 
E 5 HOH A 5 405 30 HOH HOH . 
E 5 HOH A 6 406 66 HOH HOH . 
E 5 HOH A 7 407 12 HOH HOH . 
E 5 HOH A 8 408 7 HOH HOH . 
E 5 HOH A 9 409 69 HOH HOH . 
E 5 HOH A 10 410 53 HOH HOH . 
E 5 HOH A 11 411 10 HOH HOH . 
E 5 HOH A 12 412 60 HOH HOH . 
E 5 HOH A 13 413 121 HOH HOH . 
E 5 HOH A 14 414 5 HOH HOH . 
E 5 HOH A 15 415 6 HOH HOH . 
E 5 HOH A 16 416 4 HOH HOH . 
E 5 HOH A 17 417 37 HOH HOH . 
E 5 HOH A 18 418 52 HOH HOH . 
E 5 HOH A 19 419 42 HOH HOH . 
E 5 HOH A 20 420 84 HOH HOH . 
E 5 HOH A 21 421 73 HOH HOH . 
E 5 HOH A 22 422 32 HOH HOH . 
E 5 HOH A 23 423 22 HOH HOH . 
E 5 HOH A 24 424 15 HOH HOH . 
E 5 HOH A 25 425 13 HOH HOH . 
E 5 HOH A 26 426 3 HOH HOH . 
E 5 HOH A 27 427 41 HOH HOH . 
E 5 HOH A 28 428 31 HOH HOH . 
E 5 HOH A 29 429 82 HOH HOH . 
E 5 HOH A 30 430 96 HOH HOH . 
E 5 HOH A 31 431 79 HOH HOH . 
E 5 HOH A 32 432 2 HOH HOH . 
E 5 HOH A 33 433 107 HOH HOH . 
E 5 HOH A 34 434 83 HOH HOH . 
E 5 HOH A 35 435 36 HOH HOH . 
E 5 HOH A 36 436 33 HOH HOH . 
E 5 HOH A 37 437 39 HOH HOH . 
E 5 HOH A 38 438 64 HOH HOH . 
E 5 HOH A 39 439 45 HOH HOH . 
E 5 HOH A 40 440 108 HOH HOH . 
E 5 HOH A 41 441 78 HOH HOH . 
E 5 HOH A 42 442 46 HOH HOH . 
E 5 HOH A 43 443 16 HOH HOH . 
E 5 HOH A 44 444 29 HOH HOH . 
E 5 HOH A 45 445 70 HOH HOH . 
E 5 HOH A 46 446 91 HOH HOH . 
E 5 HOH A 47 447 110 HOH HOH . 
E 5 HOH A 48 448 104 HOH HOH . 
E 5 HOH A 49 449 17 HOH HOH . 
E 5 HOH A 50 450 119 HOH HOH . 
E 5 HOH A 51 451 19 HOH HOH . 
E 5 HOH A 52 452 89 HOH HOH . 
E 5 HOH A 53 453 11 HOH HOH . 
E 5 HOH A 54 454 101 HOH HOH . 
E 5 HOH A 55 455 26 HOH HOH . 
E 5 HOH A 56 456 58 HOH HOH . 
E 5 HOH A 57 457 24 HOH HOH . 
E 5 HOH A 58 458 88 HOH HOH . 
E 5 HOH A 59 459 68 HOH HOH . 
E 5 HOH A 60 460 56 HOH HOH . 
E 5 HOH A 61 461 86 HOH HOH . 
E 5 HOH A 62 462 51 HOH HOH . 
E 5 HOH A 63 463 1 HOH HOH . 
E 5 HOH A 64 464 9 HOH HOH . 
E 5 HOH A 65 465 18 HOH HOH . 
E 5 HOH A 66 466 109 HOH HOH . 
E 5 HOH A 67 467 102 HOH HOH . 
E 5 HOH A 68 468 112 HOH HOH . 
E 5 HOH A 69 469 40 HOH HOH . 
E 5 HOH A 70 470 72 HOH HOH . 
E 5 HOH A 71 471 92 HOH HOH . 
E 5 HOH A 72 472 50 HOH HOH . 
E 5 HOH A 73 473 14 HOH HOH . 
E 5 HOH A 74 474 43 HOH HOH . 
E 5 HOH A 75 475 28 HOH HOH . 
E 5 HOH A 76 476 57 HOH HOH . 
E 5 HOH A 77 477 49 HOH HOH . 
E 5 HOH A 78 478 21 HOH HOH . 
E 5 HOH A 79 479 114 HOH HOH . 
E 5 HOH A 80 480 85 HOH HOH . 
E 5 HOH A 81 481 48 HOH HOH . 
E 5 HOH A 82 482 23 HOH HOH . 
E 5 HOH A 83 483 20 HOH HOH . 
E 5 HOH A 84 484 77 HOH HOH . 
E 5 HOH A 85 485 25 HOH HOH . 
E 5 HOH A 86 486 75 HOH HOH . 
E 5 HOH A 87 487 100 HOH HOH . 
E 5 HOH A 88 488 120 HOH HOH . 
E 5 HOH A 89 489 87 HOH HOH . 
E 5 HOH A 90 490 54 HOH HOH . 
E 5 HOH A 91 491 35 HOH HOH . 
E 5 HOH A 92 492 106 HOH HOH . 
E 5 HOH A 93 493 44 HOH HOH . 
E 5 HOH A 94 494 34 HOH HOH . 
E 5 HOH A 95 495 123 HOH HOH . 
E 5 HOH A 96 496 118 HOH HOH . 
E 5 HOH A 97 497 113 HOH HOH . 
E 5 HOH A 98 498 80 HOH HOH . 
E 5 HOH A 99 499 122 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . B 2 33.095 15.738 -18.74 1 17.89 ? PA NAD 301 A 1 
HETATM 2 O O1A NAD . . . B 2 32.048 16.606 -18.126 1 19.41 ? O1A NAD 301 A 1 
HETATM 3 O O2A NAD . . . B 2 32.645 14.788 -19.861 1 19.7 ? O2A NAD 301 A 1 
HETATM 4 O O5B NAD . . . B 2 34.288 16.649 -19.254 1 17.63 ? O5B NAD 301 A 1 
HETATM 5 C C5B NAD . . . B 2 35.372 16.059 -19.975 1 17.5 ? C5B NAD 301 A 1 
HETATM 6 C C4B NAD . . . B 2 35.97 17.118 -20.866 1 17.67 ? C4B NAD 301 A 1 
HETATM 7 O O4B NAD . . . B 2 37.07 16.506 -21.57 1 18.04 ? O4B NAD 301 A 1 
HETATM 8 C C3B NAD . . . B 2 35.026 17.698 -21.935 1 17.67 ? C3B NAD 301 A 1 
HETATM 9 O O3B NAD . . . B 2 35.107 19.125 -22.048 1 19.36 ? O3B NAD 301 A 1 
HETATM 10 C C2B NAD . . . B 2 35.481 16.977 -23.207 1 17.84 ? C2B NAD 301 A 1 
HETATM 11 O O2B NAD . . . B 2 35.217 17.685 -24.419 1 19.26 ? O2B NAD 301 A 1 
HETATM 12 C C1B NAD . . . B 2 36.974 16.849 -22.939 1 17.43 ? C1B NAD 301 A 1 
HETATM 13 N N9A NAD . . . B 2 37.61 15.809 -23.73 1 18.06 ? N9A NAD 301 A 1 
HETATM 14 C C8A NAD . . . B 2 37.13 14.554 -24.003 1 19.65 ? C8A NAD 301 A 1 
HETATM 15 N N7A NAD . . . B 2 37.857 13.879 -24.859 1 19.63 ? N7A NAD 301 A 1 
HETATM 16 C C5A NAD . . . B 2 38.893 14.75 -25.17 1 17.87 ? C5A NAD 301 A 1 
HETATM 17 C C6A NAD . . . B 2 39.981 14.649 -26.057 1 18.67 ? C6A NAD 301 A 1 
HETATM 18 N N6A NAD . . . B 2 40.193 13.597 -26.867 1 20.7 ? N6A NAD 301 A 1 
HETATM 19 N N1A NAD . . . B 2 40.839 15.692 -26.119 1 18.66 ? N1A NAD 301 A 1 
HETATM 20 C C2A NAD . . . B 2 40.596 16.77 -25.363 1 18.84 ? C2A NAD 301 A 1 
HETATM 21 N N3A NAD . . . B 2 39.584 16.992 -24.515 1 17.44 ? N3A NAD 301 A 1 
HETATM 22 C C4A NAD . . . B 2 38.762 15.934 -24.465 1 16.72 ? C4A NAD 301 A 1 
HETATM 23 O O3 NAD . . . B 2 33.776 14.799 -17.648 1 16.83 ? O3 NAD 301 A 1 
HETATM 24 P PN NAD . . . B 2 34.096 14.961 -16.085 1 16 ? PN NAD 301 A 1 
HETATM 25 O O1N NAD . . . B 2 33.001 14.305 -15.329 1 17.62 ? O1N NAD 301 A 1 
HETATM 26 O O2N NAD . . . B 2 34.448 16.364 -15.799 1 16.19 ? O2N NAD 301 A 1 
HETATM 27 O O5D NAD . . . B 2 35.385 14.031 -15.955 1 16.49 ? O5D NAD 301 A 1 
HETATM 28 C C5D NAD . . . B 2 36.708 14.596 -16.101 1 15.65 ? C5D NAD 301 A 1 
HETATM 29 C C4D NAD . . . B 2 37.698 13.552 -15.645 1 14.47 ? C4D NAD 301 A 1 
HETATM 30 O O4D NAD . . . B 2 37.379 13.143 -14.292 1 14.75 ? O4D NAD 301 A 1 
HETATM 31 C C3D NAD . . . B 2 37.746 12.262 -16.482 1 14.96 ? C3D NAD 301 A 1 
HETATM 32 O O3D NAD . . . B 2 39.088 11.787 -16.568 1 15.48 ? O3D NAD 301 A 1 
HETATM 33 C C2D NAD . . . B 2 36.918 11.285 -15.646 1 15 ? C2D NAD 301 A 1 
HETATM 34 O O2D NAD . . . B 2 37.309 9.935 -15.893 1 16.44 ? O2D NAD 301 A 1 
HETATM 35 C C1D NAD . . . B 2 37.3 11.745 -14.237 1 14.63 ? C1D NAD 301 A 1 
HETATM 36 N N1N NAD . . . B 2 36.298 11.374 -13.173 1 14.69 ? N1N NAD 301 A 1 
HETATM 37 C C2N NAD . . . B 2 35.049 11.884 -13.212 1 14.86 ? C2N NAD 301 A 1 
HETATM 38 C C3N NAD . . . B 2 34.145 11.564 -12.216 1 14.46 ? C3N NAD 301 A 1 
HETATM 39 C C7N NAD . . . B 2 32.762 12.135 -12.083 1 15.25 ? C7N NAD 301 A 1 
HETATM 40 O O7N NAD . . . B 2 32.032 11.73 -11.169 1 17.12 ? O7N NAD 301 A 1 
HETATM 41 N N7N NAD . . . B 2 32.366 13.08 -12.96 1 17.49 ? N7N NAD 301 A 1 
HETATM 42 C C4N NAD . . . B 2 34.55 10.708 -11.193 1 14.82 ? C4N NAD 301 A 1 
HETATM 43 C C5N NAD . . . B 2 35.837 10.199 -11.182 1 15.86 ? C5N NAD 301 A 1 
HETATM 44 C C6N NAD . . . B 2 36.707 10.545 -12.193 1 15.19 ? C6N NAD 301 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           244 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           44 
#