data_5EN4 # _model_server_result.job_id uKeUjuX15n7LPc7sCmwg6Q _model_server_result.datetime_utc '2024-12-21 14:03:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5en4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5EN4 # _exptl.entry_id 5EN4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EN4 _cell.length_a 91.724 _cell.length_b 91.724 _cell.length_c 135.022 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EN4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 91.724 0 0 3 'crystal symmetry operation' 5_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 91.724 0 0 4 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 50 A GLU 50 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc2 A O LEU 53 A LEU 53 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc3 A O PRO 54 A PRO 54 1_555 D NA NA . A NA 303 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc4 A O ALA 56 A ALA 56 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc5 D NA NA . A NA 303 1_555 E O HOH . A HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5EN4 _atom_sites.fract_transf_matrix[1][1] 0.010902 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010902 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007406 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 301 2 NAD NAD . C 3 5Q6 A 1 302 1 5Q6 F77 . D 4 NA A 1 303 1 NA NA . E 5 HOH A 1 401 65 HOH HOH . E 5 HOH A 2 402 67 HOH HOH . E 5 HOH A 3 403 27 HOH HOH . E 5 HOH A 4 404 76 HOH HOH . E 5 HOH A 5 405 30 HOH HOH . E 5 HOH A 6 406 66 HOH HOH . E 5 HOH A 7 407 12 HOH HOH . E 5 HOH A 8 408 7 HOH HOH . E 5 HOH A 9 409 69 HOH HOH . E 5 HOH A 10 410 53 HOH HOH . E 5 HOH A 11 411 10 HOH HOH . E 5 HOH A 12 412 60 HOH HOH . E 5 HOH A 13 413 121 HOH HOH . E 5 HOH A 14 414 5 HOH HOH . E 5 HOH A 15 415 6 HOH HOH . E 5 HOH A 16 416 4 HOH HOH . E 5 HOH A 17 417 37 HOH HOH . E 5 HOH A 18 418 52 HOH HOH . E 5 HOH A 19 419 42 HOH HOH . E 5 HOH A 20 420 84 HOH HOH . E 5 HOH A 21 421 73 HOH HOH . E 5 HOH A 22 422 32 HOH HOH . E 5 HOH A 23 423 22 HOH HOH . E 5 HOH A 24 424 15 HOH HOH . E 5 HOH A 25 425 13 HOH HOH . E 5 HOH A 26 426 3 HOH HOH . E 5 HOH A 27 427 41 HOH HOH . E 5 HOH A 28 428 31 HOH HOH . E 5 HOH A 29 429 82 HOH HOH . E 5 HOH A 30 430 96 HOH HOH . E 5 HOH A 31 431 79 HOH HOH . E 5 HOH A 32 432 2 HOH HOH . E 5 HOH A 33 433 107 HOH HOH . E 5 HOH A 34 434 83 HOH HOH . E 5 HOH A 35 435 36 HOH HOH . E 5 HOH A 36 436 33 HOH HOH . E 5 HOH A 37 437 39 HOH HOH . E 5 HOH A 38 438 64 HOH HOH . E 5 HOH A 39 439 45 HOH HOH . E 5 HOH A 40 440 108 HOH HOH . E 5 HOH A 41 441 78 HOH HOH . E 5 HOH A 42 442 46 HOH HOH . E 5 HOH A 43 443 16 HOH HOH . E 5 HOH A 44 444 29 HOH HOH . E 5 HOH A 45 445 70 HOH HOH . E 5 HOH A 46 446 91 HOH HOH . E 5 HOH A 47 447 110 HOH HOH . E 5 HOH A 48 448 104 HOH HOH . E 5 HOH A 49 449 17 HOH HOH . E 5 HOH A 50 450 119 HOH HOH . E 5 HOH A 51 451 19 HOH HOH . E 5 HOH A 52 452 89 HOH HOH . E 5 HOH A 53 453 11 HOH HOH . E 5 HOH A 54 454 101 HOH HOH . E 5 HOH A 55 455 26 HOH HOH . E 5 HOH A 56 456 58 HOH HOH . E 5 HOH A 57 457 24 HOH HOH . E 5 HOH A 58 458 88 HOH HOH . E 5 HOH A 59 459 68 HOH HOH . E 5 HOH A 60 460 56 HOH HOH . E 5 HOH A 61 461 86 HOH HOH . E 5 HOH A 62 462 51 HOH HOH . E 5 HOH A 63 463 1 HOH HOH . E 5 HOH A 64 464 9 HOH HOH . E 5 HOH A 65 465 18 HOH HOH . E 5 HOH A 66 466 109 HOH HOH . E 5 HOH A 67 467 102 HOH HOH . E 5 HOH A 68 468 112 HOH HOH . E 5 HOH A 69 469 40 HOH HOH . E 5 HOH A 70 470 72 HOH HOH . E 5 HOH A 71 471 92 HOH HOH . E 5 HOH A 72 472 50 HOH HOH . E 5 HOH A 73 473 14 HOH HOH . E 5 HOH A 74 474 43 HOH HOH . E 5 HOH A 75 475 28 HOH HOH . E 5 HOH A 76 476 57 HOH HOH . E 5 HOH A 77 477 49 HOH HOH . E 5 HOH A 78 478 21 HOH HOH . E 5 HOH A 79 479 114 HOH HOH . E 5 HOH A 80 480 85 HOH HOH . E 5 HOH A 81 481 48 HOH HOH . E 5 HOH A 82 482 23 HOH HOH . E 5 HOH A 83 483 20 HOH HOH . E 5 HOH A 84 484 77 HOH HOH . E 5 HOH A 85 485 25 HOH HOH . E 5 HOH A 86 486 75 HOH HOH . E 5 HOH A 87 487 100 HOH HOH . E 5 HOH A 88 488 120 HOH HOH . E 5 HOH A 89 489 87 HOH HOH . E 5 HOH A 90 490 54 HOH HOH . E 5 HOH A 91 491 35 HOH HOH . E 5 HOH A 92 492 106 HOH HOH . E 5 HOH A 93 493 44 HOH HOH . E 5 HOH A 94 494 34 HOH HOH . E 5 HOH A 95 495 123 HOH HOH . E 5 HOH A 96 496 118 HOH HOH . E 5 HOH A 97 497 113 HOH HOH . E 5 HOH A 98 498 80 HOH HOH . E 5 HOH A 99 499 122 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 41.075 _atom_site.Cartn_y 34.833 _atom_site.Cartn_z -21.229 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.03 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 1 #