data_5END # _model_server_result.job_id pyJmX16BNLB9EiYRxntS9g _model_server_result.datetime_utc '2024-10-10 03:27:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5end # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5END # _exptl.entry_id 5END _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5END _cell.length_a 63.995 _cell.length_b 63.995 _cell.length_c 190.474 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5END _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 63.995 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 5END _atom_sites.fract_transf_matrix[1][1] 0.015626 _atom_sites.fract_transf_matrix[1][2] 0.009022 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018044 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL B 1 301 1 GOL GOL . D 3 HOH A 1 301 48 HOH HOH . D 3 HOH A 2 302 24 HOH HOH . D 3 HOH A 3 303 41 HOH HOH . D 3 HOH A 4 304 25 HOH HOH . D 3 HOH A 5 305 35 HOH HOH . D 3 HOH A 6 306 9 HOH HOH . D 3 HOH A 7 307 16 HOH HOH . D 3 HOH A 8 308 29 HOH HOH . D 3 HOH A 9 309 50 HOH HOH . D 3 HOH A 10 310 42 HOH HOH . D 3 HOH A 11 311 23 HOH HOH . D 3 HOH A 12 312 10 HOH HOH . D 3 HOH A 13 313 22 HOH HOH . D 3 HOH A 14 314 32 HOH HOH . D 3 HOH A 15 315 17 HOH HOH . D 3 HOH A 16 316 2 HOH HOH . D 3 HOH A 17 317 37 HOH HOH . D 3 HOH A 18 318 4 HOH HOH . D 3 HOH A 19 319 8 HOH HOH . D 3 HOH A 20 320 5 HOH HOH . D 3 HOH A 21 321 39 HOH HOH . D 3 HOH A 22 322 40 HOH HOH . E 3 HOH B 1 401 45 HOH HOH . E 3 HOH B 2 402 14 HOH HOH . E 3 HOH B 3 403 49 HOH HOH . E 3 HOH B 4 404 6 HOH HOH . E 3 HOH B 5 405 47 HOH HOH . E 3 HOH B 6 406 27 HOH HOH . E 3 HOH B 7 407 43 HOH HOH . E 3 HOH B 8 408 3 HOH HOH . E 3 HOH B 9 409 11 HOH HOH . E 3 HOH B 10 410 46 HOH HOH . E 3 HOH B 11 411 28 HOH HOH . E 3 HOH B 12 412 44 HOH HOH . E 3 HOH B 13 413 26 HOH HOH . E 3 HOH B 14 414 18 HOH HOH . E 3 HOH B 15 415 19 HOH HOH . E 3 HOH B 16 416 7 HOH HOH . E 3 HOH B 17 417 13 HOH HOH . E 3 HOH B 18 418 31 HOH HOH . E 3 HOH B 19 419 21 HOH HOH . E 3 HOH B 20 420 34 HOH HOH . E 3 HOH B 21 421 15 HOH HOH . E 3 HOH B 22 422 12 HOH HOH . E 3 HOH B 23 423 33 HOH HOH . E 3 HOH B 24 424 1 HOH HOH . E 3 HOH B 25 425 36 HOH HOH . E 3 HOH B 26 426 30 HOH HOH . E 3 HOH B 27 427 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 17.979 -11.181 -34.934 1 43.44 ? C1 GOL 301 B 1 HETATM 2 O O1 GOL . . . C 2 16.714 -11.028 -34.265 1 41.4 ? O1 GOL 301 B 1 HETATM 3 C C2 GOL . . . C 2 18.785 -9.876 -34.832 1 44.31 ? C2 GOL 301 B 1 HETATM 4 O O2 GOL . . . C 2 20.188 -10.092 -35.064 1 44.64 ? O2 GOL 301 B 1 HETATM 5 C C3 GOL . . . C 2 18.286 -8.832 -35.83 1 44.83 ? C3 GOL 301 B 1 HETATM 6 O O3 GOL . . . C 2 18.368 -7.536 -35.227 1 44.83 ? O3 GOL 301 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #