data_5ENM # _model_server_result.job_id N2BhoBD8BCrOXnjf5yOBaw _model_server_result.datetime_utc '2024-11-25 18:33:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5enm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 5ENM # _exptl.entry_id 5ENM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 403.449 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{R},4~{S},6~{S})-4-[2,4-bis(fluoranyl)-5-pyrimidin-5-yl-phenyl]-6-(3,5-dimethyl-1,2-oxazol-4-yl)-1,3-thiazinan-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ENM _cell.length_a 102.234 _cell.length_b 102.234 _cell.length_c 170.579 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ENM _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 217 A CYS 203 1_555 A SG CYS 421 A CYS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 279 A CYS 265 1_555 A SG CYS 444 A CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C19 H19 F2 N5 O S' _chem_comp.formula_weight 403.449 _chem_comp.id 5QU _chem_comp.mon_nstd_flag . _chem_comp.name (2~{R},4~{S},6~{S})-4-[2,4-bis(fluoranyl)-5-pyrimidin-5-yl-phenyl]-6-(3,5-dimethyl-1,2-oxazol-4-yl)-1,3-thiazinan-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N6 O5 5QU sing 1 n y N6 C2 5QU doub 2 n y O5 C4 5QU sing 3 n y C2 C1 5QU sing 4 n n C2 C3 5QU sing 5 n y C4 C7 5QU sing 6 n n C4 C3 5QU doub 7 n y C3 C8 5QU sing 8 n n F21 C20 5QU sing 9 n n C9 C8 5QU sing 10 n n C9 C10 5QU sing 11 n n C8 S13 5QU sing 12 n n C20 C19 5QU doub 13 n y C20 C15 5QU sing 14 n y C19 C18 5QU sing 15 n y C10 C15 5QU sing 16 n n C10 N11 5QU sing 17 n n C15 C16 5QU doub 18 n y S13 C12 5QU sing 19 n n C18 F22 5QU sing 20 n n C18 C17 5QU doub 21 n y C12 N11 5QU sing 22 n n C12 N14 5QU sing 23 n n C16 C17 5QU sing 24 n y C17 C23 5QU sing 25 n n C24 C23 5QU doub 26 n y C24 N25 5QU sing 27 n y C23 C28 5QU sing 28 n y N25 C26 5QU doub 29 n y C28 N27 5QU doub 30 n y C26 N27 5QU sing 31 n y N14 H1 5QU sing 32 n n N14 H2 5QU sing 33 n n C16 H4 5QU sing 34 n n C19 H5 5QU sing 35 n n C24 H6 5QU sing 36 n n C12 H7 5QU sing 37 n n C1 H8 5QU sing 38 n n C1 H9 5QU sing 39 n n C1 H10 5QU sing 40 n n C7 H11 5QU sing 41 n n C7 H12 5QU sing 42 n n C7 H13 5QU sing 43 n n C8 H14 5QU sing 44 n n C9 H15 5QU sing 45 n n C9 H16 5QU sing 46 n n C10 H17 5QU sing 47 n n N11 H18 5QU sing 48 n n C26 H20 5QU sing 49 n n C28 H21 5QU sing 50 n n # _atom_sites.entry_id 5ENM _atom_sites.fract_transf_matrix[1][1] 0.009781 _atom_sites.fract_transf_matrix[1][2] 0.005647 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011295 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005862 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 1 GOL GOL . C 3 IOD A 1 502 1 IOD IOD . D 4 5QU A 1 503 1 5QU LG1 . E 5 HOH A 1 601 91 HOH HOH . E 5 HOH A 2 602 59 HOH HOH . E 5 HOH A 3 603 85 HOH HOH . E 5 HOH A 4 604 31 HOH HOH . E 5 HOH A 5 605 14 HOH HOH . E 5 HOH A 6 606 51 HOH HOH . E 5 HOH A 7 607 56 HOH HOH . E 5 HOH A 8 608 19 HOH HOH . E 5 HOH A 9 609 20 HOH HOH . E 5 HOH A 10 610 8 HOH HOH . E 5 HOH A 11 611 53 HOH HOH . E 5 HOH A 12 612 63 HOH HOH . E 5 HOH A 13 613 65 HOH HOH . E 5 HOH A 14 614 67 HOH HOH . E 5 HOH A 15 615 15 HOH HOH . E 5 HOH A 16 616 5 HOH HOH . E 5 HOH A 17 617 26 HOH HOH . E 5 HOH A 18 618 24 HOH HOH . E 5 HOH A 19 619 43 HOH HOH . E 5 HOH A 20 620 30 HOH HOH . E 5 HOH A 21 621 42 HOH HOH . E 5 HOH A 22 622 11 HOH HOH . E 5 HOH A 23 623 3 HOH HOH . E 5 HOH A 24 624 111 HOH HOH . E 5 HOH A 25 625 92 HOH HOH . E 5 HOH A 26 626 90 HOH HOH . E 5 HOH A 27 627 48 HOH HOH . E 5 HOH A 28 628 10 HOH HOH . E 5 HOH A 29 629 125 HOH HOH . E 5 HOH A 30 630 1 HOH HOH . E 5 HOH A 31 631 88 HOH HOH . E 5 HOH A 32 632 4 HOH HOH . E 5 HOH A 33 633 98 HOH HOH . E 5 HOH A 34 634 36 HOH HOH . E 5 HOH A 35 635 45 HOH HOH . E 5 HOH A 36 636 18 HOH HOH . E 5 HOH A 37 637 60 HOH HOH . E 5 HOH A 38 638 50 HOH HOH . E 5 HOH A 39 639 95 HOH HOH . E 5 HOH A 40 640 130 HOH HOH . E 5 HOH A 41 641 126 HOH HOH . E 5 HOH A 42 642 16 HOH HOH . E 5 HOH A 43 643 37 HOH HOH . E 5 HOH A 44 644 69 HOH HOH . E 5 HOH A 45 645 128 HOH HOH . E 5 HOH A 46 646 17 HOH HOH . E 5 HOH A 47 647 13 HOH HOH . E 5 HOH A 48 648 117 HOH HOH . E 5 HOH A 49 649 94 HOH HOH . E 5 HOH A 50 650 120 HOH HOH . E 5 HOH A 51 651 21 HOH HOH . E 5 HOH A 52 652 2 HOH HOH . E 5 HOH A 53 653 44 HOH HOH . E 5 HOH A 54 654 29 HOH HOH . E 5 HOH A 55 655 68 HOH HOH . E 5 HOH A 56 656 6 HOH HOH . E 5 HOH A 57 657 81 HOH HOH . E 5 HOH A 58 658 9 HOH HOH . E 5 HOH A 59 659 58 HOH HOH . E 5 HOH A 60 660 115 HOH HOH . E 5 HOH A 61 661 79 HOH HOH . E 5 HOH A 62 662 74 HOH HOH . E 5 HOH A 63 663 119 HOH HOH . E 5 HOH A 64 664 54 HOH HOH . E 5 HOH A 65 665 12 HOH HOH . E 5 HOH A 66 666 114 HOH HOH . E 5 HOH A 67 667 49 HOH HOH . E 5 HOH A 68 668 87 HOH HOH . E 5 HOH A 69 669 38 HOH HOH . E 5 HOH A 70 670 34 HOH HOH . E 5 HOH A 71 671 27 HOH HOH . E 5 HOH A 72 672 22 HOH HOH . E 5 HOH A 73 673 61 HOH HOH . E 5 HOH A 74 674 39 HOH HOH . E 5 HOH A 75 675 62 HOH HOH . E 5 HOH A 76 676 73 HOH HOH . E 5 HOH A 77 677 57 HOH HOH . E 5 HOH A 78 678 127 HOH HOH . E 5 HOH A 79 679 66 HOH HOH . E 5 HOH A 80 680 93 HOH HOH . E 5 HOH A 81 681 47 HOH HOH . E 5 HOH A 82 682 55 HOH HOH . E 5 HOH A 83 683 116 HOH HOH . E 5 HOH A 84 684 108 HOH HOH . E 5 HOH A 85 685 64 HOH HOH . E 5 HOH A 86 686 28 HOH HOH . E 5 HOH A 87 687 7 HOH HOH . E 5 HOH A 88 688 72 HOH HOH . E 5 HOH A 89 689 82 HOH HOH . E 5 HOH A 90 690 110 HOH HOH . E 5 HOH A 91 691 97 HOH HOH . E 5 HOH A 92 692 25 HOH HOH . E 5 HOH A 93 693 89 HOH HOH . E 5 HOH A 94 694 33 HOH HOH . E 5 HOH A 95 695 80 HOH HOH . E 5 HOH A 96 696 46 HOH HOH . E 5 HOH A 97 697 71 HOH HOH . E 5 HOH A 98 698 32 HOH HOH . E 5 HOH A 99 699 100 HOH HOH . E 5 HOH A 100 700 70 HOH HOH . E 5 HOH A 101 701 78 HOH HOH . E 5 HOH A 102 702 103 HOH HOH . E 5 HOH A 103 703 96 HOH HOH . E 5 HOH A 104 704 23 HOH HOH . E 5 HOH A 105 705 84 HOH HOH . E 5 HOH A 106 706 104 HOH HOH . E 5 HOH A 107 707 83 HOH HOH . E 5 HOH A 108 708 77 HOH HOH . E 5 HOH A 109 709 121 HOH HOH . E 5 HOH A 110 710 52 HOH HOH . E 5 HOH A 111 711 105 HOH HOH . E 5 HOH A 112 712 75 HOH HOH . E 5 HOH A 113 713 113 HOH HOH . E 5 HOH A 114 714 41 HOH HOH . E 5 HOH A 115 715 86 HOH HOH . E 5 HOH A 116 716 35 HOH HOH . E 5 HOH A 117 717 131 HOH HOH . E 5 HOH A 118 718 106 HOH HOH . E 5 HOH A 119 719 124 HOH HOH . E 5 HOH A 120 720 112 HOH HOH . E 5 HOH A 121 721 101 HOH HOH . E 5 HOH A 122 722 109 HOH HOH . E 5 HOH A 123 723 40 HOH HOH . E 5 HOH A 124 724 107 HOH HOH . E 5 HOH A 125 725 99 HOH HOH . E 5 HOH A 126 726 102 HOH HOH . E 5 HOH A 127 727 118 HOH HOH . E 5 HOH A 128 728 123 HOH HOH . E 5 HOH A 129 729 76 HOH HOH . E 5 HOH A 130 730 122 HOH HOH . E 5 HOH A 131 731 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N14 5QU . . . D 4 15.232 40.061 -6.084 1 31.79 ? N14 5QU 503 A 1 HETATM 2 C C18 5QU . . . D 4 22.059 39.414 -7.559 1 31.82 ? C18 5QU 503 A 1 HETATM 3 C C17 5QU . . . D 4 21.105 40.068 -6.774 1 31.74 ? C17 5QU 503 A 1 HETATM 4 C C16 5QU . . . D 4 19.751 39.869 -7.046 1 31.41 ? C16 5QU 503 A 1 HETATM 5 C C15 5QU . . . D 4 19.321 39.032 -8.077 1 31.73 ? C15 5QU 503 A 1 HETATM 6 C C19 5QU . . . D 4 21.636 38.581 -8.593 1 31.66 ? C19 5QU 503 A 1 HETATM 7 C C20 5QU . . . D 4 20.282 38.388 -8.856 1 31.73 ? C20 5QU 503 A 1 HETATM 8 C C23 5QU . . . D 4 21.506 40.973 -5.654 1 31.74 ? C23 5QU 503 A 1 HETATM 9 C C24 5QU . . . D 4 22.391 42.029 -5.882 1 31.85 ? C24 5QU 503 A 1 HETATM 10 C C12 5QU . . . D 4 16.083 40.056 -7.12 1 32.04 ? C12 5QU 503 A 1 HETATM 11 C C1 5QU . . . D 4 14.492 40.996 -11.097 1 32.85 ? C1 5QU 503 A 1 HETATM 12 C C2 5QU . . . D 4 15.732 41.823 -11.36 1 32.72 ? C2 5QU 503 A 1 HETATM 13 C C3 5QU . . . D 4 16.935 41.884 -10.651 1 32.61 ? C3 5QU 503 A 1 HETATM 14 C C4 5QU . . . D 4 17.75 42.803 -11.312 1 33.02 ? C4 5QU 503 A 1 HETATM 15 O O5 5QU . . . D 4 17.109 43.268 -12.342 1 32.94 ? O5 5QU 503 A 1 HETATM 16 N N6 5QU . . . D 4 15.835 42.672 -12.403 1 32.85 ? N6 5QU 503 A 1 HETATM 17 C C7 5QU . . . D 4 19.153 43.2 -10.908 1 33.04 ? C7 5QU 503 A 1 HETATM 18 C C8 5QU . . . D 4 17.364 41.145 -9.397 1 32.45 ? C8 5QU 503 A 1 HETATM 19 C C9 5QU . . . D 4 17.389 39.622 -9.578 1 31.97 ? C9 5QU 503 A 1 HETATM 20 C C10 5QU . . . D 4 17.828 38.881 -8.301 1 31.94 ? C10 5QU 503 A 1 HETATM 21 N N11 5QU . . . D 4 17.043 39.202 -7.093 1 31.87 ? N11 5QU 503 A 1 HETATM 22 S S13 5QU . . . D 4 16.363 41.572 -7.975 1 32.55 ? S13 5QU 503 A 1 HETATM 23 F F21 5QU . . . D 4 19.988 37.569 -9.872 1 31.85 ? F21 5QU 503 A 1 HETATM 24 F F22 5QU . . . D 4 23.37 39.578 -7.332 1 32.03 ? F22 5QU 503 A 1 HETATM 25 N N25 5QU . . . D 4 22.737 42.838 -4.851 1 31.95 ? N25 5QU 503 A 1 HETATM 26 C C26 5QU . . . D 4 22.231 42.641 -3.611 1 31.78 ? C26 5QU 503 A 1 HETATM 27 N N27 5QU . . . D 4 21.369 41.625 -3.371 1 31.51 ? N27 5QU 503 A 1 HETATM 28 C C28 5QU . . . D 4 20.998 40.787 -4.366 1 31.66 ? C28 5QU 503 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 372 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #