data_5ENV # _model_server_result.job_id lf2jLDnjtk3YL_eRzKxwHA _model_server_result.datetime_utc '2024-11-22 11:28:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5env # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 5ENV # _exptl.entry_id 5ENV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ENV _cell.length_a 146.256 _cell.length_b 146.256 _cell.length_c 65.98 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ENV _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 277 A CYS 277 1_555 B SG CYS 277 B CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A SG CYS 43 A CYS 43 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc2 A NE2 HIS 66 A HIS 66 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc3 A SG CYS 97 A CYS 97 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc4 A SG CYS 100 A CYS 100 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc5 A SG CYS 103 A CYS 103 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc6 A SG CYS 111 A CYS 111 1_555 D ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc7 A SG CYS 153 A CYS 153 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc8 C ZN ZN . A ZN 401 1_555 F O ETF . A ETF 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc9 B SG CYS 43 B CYS 43 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc10 B NE2 HIS 66 B HIS 66 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc11 B OE2 GLU 67 B GLU 67 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc12 B SG CYS 97 B CYS 97 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc13 B SG CYS 100 B CYS 100 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc14 B SG CYS 103 B CYS 103 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc15 B SG CYS 111 B CYS 111 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc16 B SG CYS 153 B CYS 153 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 245 n n PA O2A NAD sing 246 n n PA O5B NAD sing 247 n n PA O3 NAD sing 248 n n O2A HOA2 NAD sing 249 n n O5B C5B NAD sing 250 n n C5B C4B NAD sing 251 n n C5B H51A NAD sing 252 n n C5B H52A NAD sing 253 n n C4B O4B NAD sing 254 n n C4B C3B NAD sing 255 n n C4B H4B NAD sing 256 n n O4B C1B NAD sing 257 n n C3B O3B NAD sing 258 n n C3B C2B NAD sing 259 n n C3B H3B NAD sing 260 n n O3B HO3A NAD sing 261 n n C2B O2B NAD sing 262 n n C2B C1B NAD sing 263 n n C2B H2B NAD sing 264 n n O2B HO2A NAD sing 265 n n C1B N9A NAD sing 266 n n C1B H1B NAD sing 267 n n N9A C8A NAD sing 268 n y N9A C4A NAD sing 269 n y C8A N7A NAD doub 270 n y C8A H8A NAD sing 271 n n N7A C5A NAD sing 272 n y C5A C6A NAD sing 273 n y C5A C4A NAD doub 274 n y C6A N6A NAD sing 275 n n C6A N1A NAD doub 276 n y N6A H61A NAD sing 277 n n N6A H62A NAD sing 278 n n N1A C2A NAD sing 279 n y C2A N3A NAD doub 280 n y C2A H2A NAD sing 281 n n N3A C4A NAD sing 282 n y O3 PN NAD sing 283 n n PN O1N NAD doub 284 n n PN O2N NAD sing 285 n n PN O5D NAD sing 286 n n O5D C5D NAD sing 287 n n C5D C4D NAD sing 288 n n C5D H51N NAD sing 289 n n C5D H52N NAD sing 290 n n C4D O4D NAD sing 291 n n C4D C3D NAD sing 292 n n C4D H4D NAD sing 293 n n O4D C1D NAD sing 294 n n C3D O3D NAD sing 295 n n C3D C2D NAD sing 296 n n C3D H3D NAD sing 297 n n O3D HO3N NAD sing 298 n n C2D O2D NAD sing 299 n n C2D C1D NAD sing 300 n n C2D H2D NAD sing 301 n n O2D HO2N NAD sing 302 n n C1D N1N NAD sing 303 n n C1D H1D NAD sing 304 n n N1N C2N NAD sing 305 n y N1N C6N NAD doub 306 n y C2N C3N NAD doub 307 n y C2N H2N NAD sing 308 n n C3N C7N NAD sing 309 n n C3N C4N NAD sing 310 n y C7N O7N NAD doub 311 n n C7N N7N NAD sing 312 n n N7N H71N NAD sing 313 n n N7N H72N NAD sing 314 n n C4N C5N NAD doub 315 n y C4N H4N NAD sing 316 n n C5N C6N NAD sing 317 n y C5N H5N NAD sing 318 n n C6N H6N NAD sing 319 n n # _atom_sites.entry_id 5ENV _atom_sites.fract_transf_matrix[1][1] 0.006837 _atom_sites.fract_transf_matrix[1][2] 0.003948 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007895 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015156 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 401 ZN ZN . D 2 ZN A 1 402 402 ZN ZN . E 3 NAD A 1 403 403 NAD NAD . F 4 ETF A 1 404 404 ETF ETF . G 2 ZN B 1 401 401 ZN ZN . H 2 ZN B 1 402 402 ZN ZN . I 3 NAD B 1 403 403 NAD NAD . J 4 ETF B 1 404 404 ETF ETF . K 5 HOH A 1 501 501 HOH HOH . K 5 HOH A 2 502 502 HOH HOH . K 5 HOH A 3 503 505 HOH HOH . K 5 HOH A 4 504 507 HOH HOH . K 5 HOH A 5 505 503 HOH HOH . K 5 HOH A 6 506 504 HOH HOH . K 5 HOH A 7 507 506 HOH HOH . K 5 HOH A 8 508 509 HOH HOH . K 5 HOH A 9 509 508 HOH HOH . K 5 HOH A 10 510 510 HOH HOH . L 5 HOH B 1 501 502 HOH HOH . L 5 HOH B 2 502 501 HOH HOH . L 5 HOH B 3 503 503 HOH HOH . L 5 HOH B 4 504 504 HOH HOH . L 5 HOH B 5 505 505 HOH HOH . L 5 HOH B 6 506 506 HOH HOH . L 5 HOH B 7 507 507 HOH HOH . L 5 HOH B 8 508 508 HOH HOH . L 5 HOH B 9 509 509 HOH HOH . L 5 HOH B 10 510 511 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 3 -49.199 42.878 -21.198 1 48.58 ? PA NAD 403 A 1 HETATM 2 O O1A NAD . . . E 3 -49.614 41.771 -20.269 1 48.53 ? O1A NAD 403 A 1 HETATM 3 O O2A NAD . . . E 3 -49.124 42.703 -22.701 1 51.62 ? O2A NAD 403 A 1 HETATM 4 O O5B NAD . . . E 3 -50.19 44.115 -21.063 1 47.51 ? O5B NAD 403 A 1 HETATM 5 C C5B NAD . . . E 3 -50.026 45.295 -21.857 1 47.41 ? C5B NAD 403 A 1 HETATM 6 C C4B NAD . . . E 3 -51.319 46.102 -21.752 1 47.23 ? C4B NAD 403 A 1 HETATM 7 O O4B NAD . . . E 3 -51.151 47.296 -22.524 1 47.31 ? O4B NAD 403 A 1 HETATM 8 C C3B NAD . . . E 3 -52.54 45.337 -22.32 1 49.74 ? C3B NAD 403 A 1 HETATM 9 O O3B NAD . . . E 3 -53.606 45.063 -21.384 1 48.72 ? O3B NAD 403 A 1 HETATM 10 C C2B NAD . . . E 3 -52.981 46.222 -23.485 1 51.29 ? C2B NAD 403 A 1 HETATM 11 O O2B NAD . . . E 3 -54.389 46.324 -23.701 1 52.8 ? O2B NAD 403 A 1 HETATM 12 C C1B NAD . . . E 3 -52.418 47.578 -23.102 1 48.88 ? C1B NAD 403 A 1 HETATM 13 N N9A NAD . . . E 3 -52.431 48.52 -24.247 1 50.18 ? N9A NAD 403 A 1 HETATM 14 C C8A NAD . . . E 3 -52.288 48.284 -25.577 1 52.82 ? C8A NAD 403 A 1 HETATM 15 N N7A NAD . . . E 3 -52.424 49.432 -26.296 1 53.37 ? N7A NAD 403 A 1 HETATM 16 C C5A NAD . . . E 3 -52.649 50.426 -25.403 1 51.38 ? C5A NAD 403 A 1 HETATM 17 C C6A NAD . . . E 3 -52.882 51.894 -25.417 1 50.8 ? C6A NAD 403 A 1 HETATM 18 N N6A NAD . . . E 3 -52.885 52.559 -26.586 1 53.07 ? N6A NAD 403 A 1 HETATM 19 N N1A NAD . . . E 3 -53.086 52.558 -24.263 1 48 ? N1A NAD 403 A 1 HETATM 20 C C2A NAD . . . E 3 -53.08 51.921 -23.096 1 46.15 ? C2A NAD 403 A 1 HETATM 21 N N3A NAD . . . E 3 -52.868 50.614 -22.993 1 46.57 ? N3A NAD 403 A 1 HETATM 22 C C4A NAD . . . E 3 -52.657 49.82 -24.069 1 49.15 ? C4A NAD 403 A 1 HETATM 23 O O3 NAD . . . E 3 -47.776 43.478 -20.782 1 46.96 ? O3 NAD 403 A 1 HETATM 24 P PN NAD . . . E 3 -46.921 43.302 -19.426 1 44.93 ? PN NAD 403 A 1 HETATM 25 O O1N NAD . . . E 3 -47.689 43.913 -18.28 1 42.32 ? O1N NAD 403 A 1 HETATM 26 O O2N NAD . . . E 3 -46.233 41.944 -19.49 1 46.25 ? O2N NAD 403 A 1 HETATM 27 O O5D NAD . . . E 3 -45.694 44.335 -19.704 1 44.42 ? O5D NAD 403 A 1 HETATM 28 C C5D NAD . . . E 3 -45.841 45.638 -20.277 1 43.82 ? C5D NAD 403 A 1 HETATM 29 C C4D NAD . . . E 3 -44.501 46.201 -20.756 1 43.83 ? C4D NAD 403 A 1 HETATM 30 O O4D NAD . . . E 3 -43.707 46.456 -19.62 1 41.96 ? O4D NAD 403 A 1 HETATM 31 C C3D NAD . . . E 3 -43.662 45.319 -21.67 1 46.08 ? C3D NAD 403 A 1 HETATM 32 O O3D NAD . . . E 3 -43.01 46.088 -22.697 1 46.79 ? O3D NAD 403 A 1 HETATM 33 C C2D NAD . . . E 3 -42.621 44.721 -20.752 1 45.56 ? C2D NAD 403 A 1 HETATM 34 O O2D NAD . . . E 3 -41.385 44.35 -21.4 1 47.17 ? O2D NAD 403 A 1 HETATM 35 C C1D NAD . . . E 3 -42.425 45.895 -19.811 1 43.07 ? C1D NAD 403 A 1 HETATM 36 N N1N NAD . . . E 3 -41.873 45.635 -18.474 1 42.37 ? N1N NAD 403 A 1 HETATM 37 C C2N NAD . . . E 3 -41.046 46.569 -17.973 1 41.1 ? C2N NAD 403 A 1 HETATM 38 C C3N NAD . . . E 3 -40.467 46.43 -16.721 1 40.45 ? C3N NAD 403 A 1 HETATM 39 C C7N NAD . . . E 3 -39.553 47.484 -16.15 1 40.02 ? C7N NAD 403 A 1 HETATM 40 O O7N NAD . . . E 3 -38.883 47.223 -15.154 1 40.26 ? O7N NAD 403 A 1 HETATM 41 N N7N NAD . . . E 3 -39.469 48.722 -16.673 1 39.74 ? N7N NAD 403 A 1 HETATM 42 C C4N NAD . . . E 3 -40.774 45.297 -15.977 1 40.73 ? C4N NAD 403 A 1 HETATM 43 C C5N NAD . . . E 3 -41.639 44.328 -16.483 1 42.13 ? C5N NAD 403 A 1 HETATM 44 C C6N NAD . . . E 3 -42.19 44.524 -17.748 1 43.16 ? C6N NAD 403 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 44 #