data_5ENW # _model_server_result.job_id qu8TnoIU_iRrzqxW389HYg _model_server_result.datetime_utc '2024-11-26 00:01:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5enw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 5ENW # _exptl.entry_id 5ENW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.41 _cell.angle_gamma 90 _cell.entry_id 5ENW _cell.length_a 53.474 _cell.length_b 80.483 _cell.length_c 57.075 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ENW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5ENW _atom_sites.fract_transf_matrix[1][1] 0.018701 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008096 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012425 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019092 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL A 1 301 602 GOL GOL . E 4 GOL A 1 302 604 GOL GOL . F 4 GOL B 1 101 603 GOL GOL . G 5 HOH A 1 401 79 HOH HOH . G 5 HOH A 2 402 236 HOH HOH . G 5 HOH A 3 403 193 HOH HOH . G 5 HOH A 4 404 221 HOH HOH . G 5 HOH A 5 405 178 HOH HOH . G 5 HOH A 6 406 122 HOH HOH . G 5 HOH A 7 407 229 HOH HOH . G 5 HOH A 8 408 176 HOH HOH . G 5 HOH A 9 409 204 HOH HOH . G 5 HOH A 10 410 51 HOH HOH . G 5 HOH A 11 411 101 HOH HOH . G 5 HOH A 12 412 241 HOH HOH . G 5 HOH A 13 413 83 HOH HOH . G 5 HOH A 14 414 134 HOH HOH . G 5 HOH A 15 415 203 HOH HOH . G 5 HOH A 16 416 140 HOH HOH . G 5 HOH A 17 417 230 HOH HOH . G 5 HOH A 18 418 35 HOH HOH . G 5 HOH A 19 419 46 HOH HOH . G 5 HOH A 20 420 17 HOH HOH . G 5 HOH A 21 421 75 HOH HOH . G 5 HOH A 22 422 27 HOH HOH . G 5 HOH A 23 423 12 HOH HOH . G 5 HOH A 24 424 220 HOH HOH . G 5 HOH A 25 425 9 HOH HOH . G 5 HOH A 26 426 70 HOH HOH . G 5 HOH A 27 427 185 HOH HOH . G 5 HOH A 28 428 1 HOH HOH . G 5 HOH A 29 429 77 HOH HOH . G 5 HOH A 30 430 37 HOH HOH . G 5 HOH A 31 431 47 HOH HOH . G 5 HOH A 32 432 56 HOH HOH . G 5 HOH A 33 433 44 HOH HOH . G 5 HOH A 34 434 240 HOH HOH . G 5 HOH A 35 435 136 HOH HOH . G 5 HOH A 36 436 235 HOH HOH . G 5 HOH A 37 437 29 HOH HOH . G 5 HOH A 38 438 135 HOH HOH . G 5 HOH A 39 439 2 HOH HOH . G 5 HOH A 40 440 160 HOH HOH . G 5 HOH A 41 441 42 HOH HOH . G 5 HOH A 42 442 85 HOH HOH . G 5 HOH A 43 443 25 HOH HOH . G 5 HOH A 44 444 63 HOH HOH . G 5 HOH A 45 445 60 HOH HOH . G 5 HOH A 46 446 175 HOH HOH . G 5 HOH A 47 447 172 HOH HOH . G 5 HOH A 48 448 21 HOH HOH . G 5 HOH A 49 449 43 HOH HOH . G 5 HOH A 50 450 55 HOH HOH . G 5 HOH A 51 451 20 HOH HOH . G 5 HOH A 52 452 145 HOH HOH . G 5 HOH A 53 453 225 HOH HOH . G 5 HOH A 54 454 114 HOH HOH . G 5 HOH A 55 455 125 HOH HOH . G 5 HOH A 56 456 80 HOH HOH . G 5 HOH A 57 457 24 HOH HOH . G 5 HOH A 58 458 40 HOH HOH . G 5 HOH A 59 459 232 HOH HOH . G 5 HOH A 60 460 231 HOH HOH . G 5 HOH A 61 461 84 HOH HOH . G 5 HOH A 62 462 222 HOH HOH . G 5 HOH A 63 463 69 HOH HOH . G 5 HOH A 64 464 67 HOH HOH . G 5 HOH A 65 465 34 HOH HOH . G 5 HOH A 66 466 202 HOH HOH . G 5 HOH A 67 467 206 HOH HOH . G 5 HOH A 68 468 118 HOH HOH . G 5 HOH A 69 469 78 HOH HOH . G 5 HOH A 70 470 10 HOH HOH . G 5 HOH A 71 471 4 HOH HOH . G 5 HOH A 72 472 53 HOH HOH . G 5 HOH A 73 473 6 HOH HOH . G 5 HOH A 74 474 64 HOH HOH . G 5 HOH A 75 475 73 HOH HOH . G 5 HOH A 76 476 68 HOH HOH . G 5 HOH A 77 477 71 HOH HOH . G 5 HOH A 78 478 153 HOH HOH . G 5 HOH A 79 479 5 HOH HOH . G 5 HOH A 80 480 7 HOH HOH . G 5 HOH A 81 481 116 HOH HOH . G 5 HOH A 82 482 38 HOH HOH . G 5 HOH A 83 483 120 HOH HOH . G 5 HOH A 84 484 146 HOH HOH . G 5 HOH A 85 485 224 HOH HOH . G 5 HOH A 86 486 82 HOH HOH . G 5 HOH A 87 487 74 HOH HOH . G 5 HOH A 88 488 23 HOH HOH . G 5 HOH A 89 489 209 HOH HOH . G 5 HOH A 90 490 129 HOH HOH . G 5 HOH A 91 491 238 HOH HOH . G 5 HOH A 92 492 167 HOH HOH . G 5 HOH A 93 493 48 HOH HOH . G 5 HOH A 94 494 138 HOH HOH . G 5 HOH A 95 495 165 HOH HOH . G 5 HOH A 96 496 19 HOH HOH . G 5 HOH A 97 497 147 HOH HOH . G 5 HOH A 98 498 109 HOH HOH . G 5 HOH A 99 499 137 HOH HOH . G 5 HOH A 100 500 103 HOH HOH . G 5 HOH A 101 501 72 HOH HOH . G 5 HOH A 102 502 218 HOH HOH . G 5 HOH A 103 503 18 HOH HOH . G 5 HOH A 104 504 93 HOH HOH . G 5 HOH A 105 505 151 HOH HOH . G 5 HOH A 106 506 96 HOH HOH . G 5 HOH A 107 507 50 HOH HOH . G 5 HOH A 108 508 234 HOH HOH . G 5 HOH A 109 509 237 HOH HOH . G 5 HOH A 110 510 15 HOH HOH . G 5 HOH A 111 511 111 HOH HOH . G 5 HOH A 112 512 117 HOH HOH . G 5 HOH A 113 513 141 HOH HOH . G 5 HOH A 114 514 104 HOH HOH . G 5 HOH A 115 515 54 HOH HOH . G 5 HOH A 116 516 105 HOH HOH . G 5 HOH A 117 517 239 HOH HOH . G 5 HOH A 118 518 157 HOH HOH . G 5 HOH A 119 519 30 HOH HOH . G 5 HOH A 120 520 190 HOH HOH . G 5 HOH A 121 521 166 HOH HOH . G 5 HOH A 122 522 59 HOH HOH . G 5 HOH A 123 523 195 HOH HOH . G 5 HOH A 124 524 107 HOH HOH . G 5 HOH A 125 525 133 HOH HOH . G 5 HOH A 126 526 62 HOH HOH . G 5 HOH A 127 527 161 HOH HOH . G 5 HOH A 128 528 86 HOH HOH . G 5 HOH A 129 529 61 HOH HOH . G 5 HOH A 130 530 126 HOH HOH . G 5 HOH A 131 531 39 HOH HOH . G 5 HOH A 132 532 32 HOH HOH . G 5 HOH A 133 533 127 HOH HOH . G 5 HOH A 134 534 219 HOH HOH . G 5 HOH A 135 535 33 HOH HOH . G 5 HOH A 136 536 179 HOH HOH . G 5 HOH A 137 537 156 HOH HOH . G 5 HOH A 138 538 173 HOH HOH . G 5 HOH A 139 539 119 HOH HOH . G 5 HOH A 140 540 210 HOH HOH . G 5 HOH A 141 541 41 HOH HOH . G 5 HOH A 142 542 171 HOH HOH . G 5 HOH A 143 543 36 HOH HOH . G 5 HOH A 144 544 88 HOH HOH . G 5 HOH A 145 545 128 HOH HOH . G 5 HOH A 146 546 87 HOH HOH . G 5 HOH A 147 547 115 HOH HOH . G 5 HOH A 148 548 184 HOH HOH . G 5 HOH A 149 549 31 HOH HOH . G 5 HOH A 150 550 3 HOH HOH . G 5 HOH A 151 551 205 HOH HOH . G 5 HOH A 152 552 99 HOH HOH . G 5 HOH A 153 553 174 HOH HOH . G 5 HOH A 154 554 200 HOH HOH . G 5 HOH A 155 555 163 HOH HOH . G 5 HOH A 156 556 182 HOH HOH . G 5 HOH A 157 557 223 HOH HOH . G 5 HOH A 158 558 97 HOH HOH . G 5 HOH A 159 559 112 HOH HOH . G 5 HOH A 160 560 132 HOH HOH . G 5 HOH A 161 561 130 HOH HOH . G 5 HOH A 162 562 152 HOH HOH . G 5 HOH A 163 563 180 HOH HOH . G 5 HOH A 164 564 188 HOH HOH . G 5 HOH A 165 565 144 HOH HOH . G 5 HOH A 166 566 170 HOH HOH . G 5 HOH A 167 567 66 HOH HOH . G 5 HOH A 168 568 192 HOH HOH . G 5 HOH A 169 569 131 HOH HOH . G 5 HOH A 170 570 89 HOH HOH . G 5 HOH A 171 571 45 HOH HOH . G 5 HOH A 172 572 198 HOH HOH . G 5 HOH A 173 573 187 HOH HOH . G 5 HOH A 174 574 108 HOH HOH . G 5 HOH A 175 575 154 HOH HOH . G 5 HOH A 176 576 98 HOH HOH . G 5 HOH A 177 577 208 HOH HOH . H 5 HOH B 1 201 191 HOH HOH . H 5 HOH B 2 202 227 HOH HOH . H 5 HOH B 3 203 215 HOH HOH . H 5 HOH B 4 204 94 HOH HOH . H 5 HOH B 5 205 159 HOH HOH . H 5 HOH B 6 206 121 HOH HOH . H 5 HOH B 7 207 189 HOH HOH . H 5 HOH B 8 208 22 HOH HOH . H 5 HOH B 9 209 226 HOH HOH . H 5 HOH B 10 210 211 HOH HOH . H 5 HOH B 11 211 14 HOH HOH . H 5 HOH B 12 212 214 HOH HOH . H 5 HOH B 13 213 162 HOH HOH . H 5 HOH B 14 214 201 HOH HOH . H 5 HOH B 15 215 217 HOH HOH . H 5 HOH B 16 216 233 HOH HOH . H 5 HOH B 17 217 186 HOH HOH . H 5 HOH B 18 218 164 HOH HOH . H 5 HOH B 19 219 57 HOH HOH . H 5 HOH B 20 220 91 HOH HOH . H 5 HOH B 21 221 95 HOH HOH . H 5 HOH B 22 222 123 HOH HOH . H 5 HOH B 23 223 52 HOH HOH . H 5 HOH B 24 224 11 HOH HOH . H 5 HOH B 25 225 28 HOH HOH . H 5 HOH B 26 226 58 HOH HOH . H 5 HOH B 27 227 113 HOH HOH . H 5 HOH B 28 228 76 HOH HOH . H 5 HOH B 29 229 216 HOH HOH . H 5 HOH B 30 230 90 HOH HOH . H 5 HOH B 31 231 213 HOH HOH . H 5 HOH B 32 232 197 HOH HOH . H 5 HOH B 33 233 92 HOH HOH . H 5 HOH B 34 234 150 HOH HOH . H 5 HOH B 35 235 155 HOH HOH . H 5 HOH B 36 236 49 HOH HOH . H 5 HOH B 37 237 212 HOH HOH . H 5 HOH B 38 238 16 HOH HOH . H 5 HOH B 39 239 13 HOH HOH . H 5 HOH B 40 240 65 HOH HOH . H 5 HOH B 41 241 169 HOH HOH . H 5 HOH B 42 242 106 HOH HOH . H 5 HOH B 43 243 181 HOH HOH . H 5 HOH B 44 244 8 HOH HOH . H 5 HOH B 45 245 26 HOH HOH . H 5 HOH B 46 246 207 HOH HOH . H 5 HOH B 47 247 100 HOH HOH . H 5 HOH B 48 248 149 HOH HOH . H 5 HOH B 49 249 196 HOH HOH . H 5 HOH B 50 250 194 HOH HOH . H 5 HOH B 51 251 228 HOH HOH . H 5 HOH B 52 252 143 HOH HOH . H 5 HOH B 53 253 102 HOH HOH . H 5 HOH B 54 254 199 HOH HOH . H 5 HOH B 55 255 110 HOH HOH . H 5 HOH B 56 256 168 HOH HOH . H 5 HOH B 57 257 183 HOH HOH . H 5 HOH B 58 258 158 HOH HOH . I 5 HOH C 1 101 139 HOH HOH . I 5 HOH C 2 102 81 HOH HOH . I 5 HOH C 3 103 148 HOH HOH . I 5 HOH C 4 104 142 HOH HOH . I 5 HOH C 5 105 124 HOH HOH . I 5 HOH C 6 106 177 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 53.03 -3.466 11.635 1 39 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . D 4 53.574 -3.586 10.313 1 40.1 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . D 4 52.345 -2.121 11.83 1 39.2 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . D 4 53.213 -1.066 11.4 1 38.84 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . D 4 51.978 -1.944 13.305 1 39.27 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . D 4 50.559 -2.013 13.459 1 38.98 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #