data_5ENZ
#
_model_server_result.job_id            CK2VtwTAu-pY5jvNgIU8yw 
_model_server_result.datetime_utc      '2024-11-05 00:22:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5enz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    5ENZ 
#
_exptl.entry_id    5ENZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              404.161 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "URIDINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5ENZ 
_cell.length_a            54.19 
_cell.length_b            82.78 
_cell.length_c            170.88 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ENZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 G N N 
#
_chem_comp.formula           'C9 H14 N2 O12 P2' 
_chem_comp.formula_weight    404.161 
_chem_comp.id                UDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "URIDINE-5'-DIPHOSPHATE" 
_chem_comp.type              'rna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 UDP sing 370 n n 
N1 C6 UDP sing 371 n n 
N1 C1' UDP sing 372 n n 
C2 N3 UDP sing 373 n n 
C2 O2 UDP doub 374 n n 
N3 C4 UDP sing 375 n n 
N3 HN3 UDP sing 376 n n 
C4 C5 UDP sing 377 n n 
C4 O4 UDP doub 378 n n 
C5 C6 UDP doub 379 n n 
C5 H5 UDP sing 380 n n 
C6 H6 UDP sing 381 n n 
C1' C2' UDP sing 382 n n 
C1' O4' UDP sing 383 n n 
C1' H1' UDP sing 384 n n 
C2' O2' UDP sing 385 n n 
C2' C3' UDP sing 386 n n 
C2' H2' UDP sing 387 n n 
O2' HO2' UDP sing 388 n n 
C3' C4' UDP sing 389 n n 
C3' O3' UDP sing 390 n n 
C3' H3' UDP sing 391 n n 
C4' O4' UDP sing 392 n n 
C4' C5' UDP sing 393 n n 
C4' H4' UDP sing 394 n n 
O3' HO3' UDP sing 395 n n 
C5' O5' UDP sing 396 n n 
C5' "H5'1" UDP sing 397 n n 
C5' "H5'2" UDP sing 398 n n 
O5' PA UDP sing 399 n n 
PA O1A UDP doub 400 n n 
PA O2A UDP sing 401 n n 
PA O3A UDP sing 402 n n 
O2A HOA2 UDP sing 403 n n 
O3A PB UDP sing 404 n n 
PB O1B UDP doub 405 n n 
PB O2B UDP sing 406 n n 
PB O3B UDP sing 407 n n 
O2B HOB2 UDP sing 408 n n 
O3B HOB3 UDP sing 409 n n 
#
_atom_sites.entry_id                     5ENZ 
_atom_sites.fract_transf_matrix[1][1]    0.018454 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01208 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005852 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UDP A 1 401 401 UDP UDP . 
D 3 SO4 A 1 402 402 SO4 SO4 . 
E 4 TRS A 1 403 405 TRS TRS . 
F 5 PG4 A 1 404 406 PG4 PG4 . 
G 2 UDP B 1 401 401 UDP UDP . 
H 3 SO4 B 1 402 402 SO4 SO4 . 
I 3 SO4 B 1 403 403 SO4 SO4 . 
J 3 SO4 B 1 404 404 SO4 SO4 . 
K 4 TRS B 1 405 405 TRS TRS . 
L 6 HOH A 1 501 146 HOH WAT . 
L 6 HOH A 2 502 123 HOH WAT . 
L 6 HOH A 3 503 88 HOH WAT . 
L 6 HOH A 4 504 14 HOH WAT . 
L 6 HOH A 5 505 140 HOH WAT . 
L 6 HOH A 6 506 6 HOH WAT . 
L 6 HOH A 7 507 82 HOH WAT . 
L 6 HOH A 8 508 91 HOH WAT . 
L 6 HOH A 9 509 29 HOH WAT . 
L 6 HOH A 10 510 12 HOH WAT . 
L 6 HOH A 11 511 142 HOH WAT . 
L 6 HOH A 12 512 45 HOH WAT . 
L 6 HOH A 13 513 133 HOH WAT . 
L 6 HOH A 14 514 97 HOH WAT . 
L 6 HOH A 15 515 22 HOH WAT . 
L 6 HOH A 16 516 24 HOH WAT . 
L 6 HOH A 17 517 129 HOH WAT . 
L 6 HOH A 18 518 51 HOH WAT . 
L 6 HOH A 19 519 98 HOH WAT . 
L 6 HOH A 20 520 30 HOH WAT . 
L 6 HOH A 21 521 182 HOH WAT . 
L 6 HOH A 22 522 122 HOH WAT . 
L 6 HOH A 23 523 95 HOH WAT . 
L 6 HOH A 24 524 178 HOH WAT . 
L 6 HOH A 25 525 173 HOH WAT . 
L 6 HOH A 26 526 48 HOH WAT . 
L 6 HOH A 27 527 59 HOH WAT . 
L 6 HOH A 28 528 117 HOH WAT . 
L 6 HOH A 29 529 32 HOH WAT . 
L 6 HOH A 30 530 92 HOH WAT . 
L 6 HOH A 31 531 7 HOH WAT . 
L 6 HOH A 32 532 163 HOH WAT . 
L 6 HOH A 33 533 33 HOH WAT . 
L 6 HOH A 34 534 43 HOH WAT . 
L 6 HOH A 35 535 25 HOH WAT . 
L 6 HOH A 36 536 63 HOH WAT . 
L 6 HOH A 37 537 17 HOH WAT . 
L 6 HOH A 38 538 155 HOH WAT . 
L 6 HOH A 39 539 143 HOH WAT . 
L 6 HOH A 40 540 115 HOH WAT . 
L 6 HOH A 41 541 16 HOH WAT . 
L 6 HOH A 42 542 42 HOH WAT . 
L 6 HOH A 43 543 49 HOH WAT . 
L 6 HOH A 44 544 52 HOH WAT . 
L 6 HOH A 45 545 152 HOH WAT . 
L 6 HOH A 46 546 79 HOH WAT . 
L 6 HOH A 47 547 169 HOH WAT . 
L 6 HOH A 48 548 107 HOH WAT . 
L 6 HOH A 49 549 3 HOH WAT . 
L 6 HOH A 50 550 162 HOH WAT . 
L 6 HOH A 51 551 55 HOH WAT . 
L 6 HOH A 52 552 174 HOH WAT . 
L 6 HOH A 53 553 5 HOH WAT . 
L 6 HOH A 54 554 60 HOH WAT . 
L 6 HOH A 55 555 19 HOH WAT . 
L 6 HOH A 56 556 15 HOH WAT . 
L 6 HOH A 57 557 149 HOH WAT . 
L 6 HOH A 58 558 108 HOH WAT . 
L 6 HOH A 59 559 50 HOH WAT . 
L 6 HOH A 60 560 81 HOH WAT . 
L 6 HOH A 61 561 167 HOH WAT . 
L 6 HOH A 62 562 170 HOH WAT . 
L 6 HOH A 63 563 72 HOH WAT . 
L 6 HOH A 64 564 105 HOH WAT . 
L 6 HOH A 65 565 62 HOH WAT . 
L 6 HOH A 66 566 118 HOH WAT . 
L 6 HOH A 67 567 104 HOH WAT . 
L 6 HOH A 68 568 2 HOH WAT . 
L 6 HOH A 69 569 184 HOH WAT . 
L 6 HOH A 70 570 148 HOH WAT . 
L 6 HOH A 71 571 114 HOH WAT . 
L 6 HOH A 72 572 176 HOH WAT . 
L 6 HOH A 73 573 165 HOH WAT . 
L 6 HOH A 74 574 61 HOH WAT . 
L 6 HOH A 75 575 109 HOH WAT . 
L 6 HOH A 76 576 39 HOH WAT . 
L 6 HOH A 77 577 83 HOH WAT . 
L 6 HOH A 78 578 57 HOH WAT . 
L 6 HOH A 79 579 158 HOH WAT . 
L 6 HOH A 80 580 54 HOH WAT . 
L 6 HOH A 81 581 31 HOH WAT . 
L 6 HOH A 82 582 180 HOH WAT . 
L 6 HOH A 83 583 113 HOH WAT . 
L 6 HOH A 84 584 84 HOH WAT . 
L 6 HOH A 85 585 89 HOH WAT . 
L 6 HOH A 86 586 26 HOH WAT . 
L 6 HOH A 87 587 159 HOH WAT . 
L 6 HOH A 88 588 128 HOH WAT . 
L 6 HOH A 89 589 99 HOH WAT . 
L 6 HOH A 90 590 103 HOH WAT . 
L 6 HOH A 91 591 64 HOH WAT . 
M 6 HOH B 1 501 141 HOH WAT . 
M 6 HOH B 2 502 86 HOH WAT . 
M 6 HOH B 3 503 138 HOH WAT . 
M 6 HOH B 4 504 177 HOH WAT . 
M 6 HOH B 5 505 67 HOH WAT . 
M 6 HOH B 6 506 85 HOH WAT . 
M 6 HOH B 7 507 77 HOH WAT . 
M 6 HOH B 8 508 150 HOH WAT . 
M 6 HOH B 9 509 46 HOH WAT . 
M 6 HOH B 10 510 145 HOH WAT . 
M 6 HOH B 11 511 68 HOH WAT . 
M 6 HOH B 12 512 47 HOH WAT . 
M 6 HOH B 13 513 20 HOH WAT . 
M 6 HOH B 14 514 18 HOH WAT . 
M 6 HOH B 15 515 131 HOH WAT . 
M 6 HOH B 16 516 37 HOH WAT . 
M 6 HOH B 17 517 21 HOH WAT . 
M 6 HOH B 18 518 70 HOH WAT . 
M 6 HOH B 19 519 132 HOH WAT . 
M 6 HOH B 20 520 151 HOH WAT . 
M 6 HOH B 21 521 121 HOH WAT . 
M 6 HOH B 22 522 164 HOH WAT . 
M 6 HOH B 23 523 4 HOH WAT . 
M 6 HOH B 24 524 11 HOH WAT . 
M 6 HOH B 25 525 41 HOH WAT . 
M 6 HOH B 26 526 9 HOH WAT . 
M 6 HOH B 27 527 116 HOH WAT . 
M 6 HOH B 28 528 111 HOH WAT . 
M 6 HOH B 29 529 119 HOH WAT . 
M 6 HOH B 30 530 135 HOH WAT . 
M 6 HOH B 31 531 183 HOH WAT . 
M 6 HOH B 32 532 56 HOH WAT . 
M 6 HOH B 33 533 137 HOH WAT . 
M 6 HOH B 34 534 94 HOH WAT . 
M 6 HOH B 35 535 100 HOH WAT . 
M 6 HOH B 36 536 124 HOH WAT . 
M 6 HOH B 37 537 65 HOH WAT . 
M 6 HOH B 38 538 13 HOH WAT . 
M 6 HOH B 39 539 144 HOH WAT . 
M 6 HOH B 40 540 187 HOH WAT . 
M 6 HOH B 41 541 134 HOH WAT . 
M 6 HOH B 42 542 102 HOH WAT . 
M 6 HOH B 43 543 160 HOH WAT . 
M 6 HOH B 44 544 106 HOH WAT . 
M 6 HOH B 45 545 27 HOH WAT . 
M 6 HOH B 46 546 10 HOH WAT . 
M 6 HOH B 47 547 96 HOH WAT . 
M 6 HOH B 48 548 44 HOH WAT . 
M 6 HOH B 49 549 175 HOH WAT . 
M 6 HOH B 50 550 74 HOH WAT . 
M 6 HOH B 51 551 36 HOH WAT . 
M 6 HOH B 52 552 71 HOH WAT . 
M 6 HOH B 53 553 93 HOH WAT . 
M 6 HOH B 54 554 78 HOH WAT . 
M 6 HOH B 55 555 127 HOH WAT . 
M 6 HOH B 56 556 28 HOH WAT . 
M 6 HOH B 57 557 110 HOH WAT . 
M 6 HOH B 58 558 185 HOH WAT . 
M 6 HOH B 59 559 168 HOH WAT . 
M 6 HOH B 60 560 80 HOH WAT . 
M 6 HOH B 61 561 136 HOH WAT . 
M 6 HOH B 62 562 101 HOH WAT . 
M 6 HOH B 63 563 126 HOH WAT . 
M 6 HOH B 64 564 120 HOH WAT . 
M 6 HOH B 65 565 35 HOH WAT . 
M 6 HOH B 66 566 38 HOH WAT . 
M 6 HOH B 67 567 130 HOH WAT . 
M 6 HOH B 68 568 66 HOH WAT . 
M 6 HOH B 69 569 58 HOH WAT . 
M 6 HOH B 70 570 23 HOH WAT . 
M 6 HOH B 71 571 1 HOH WAT . 
M 6 HOH B 72 572 40 HOH WAT . 
M 6 HOH B 73 573 157 HOH WAT . 
M 6 HOH B 74 574 139 HOH WAT . 
M 6 HOH B 75 575 179 HOH WAT . 
M 6 HOH B 76 576 76 HOH WAT . 
M 6 HOH B 77 577 112 HOH WAT . 
M 6 HOH B 78 578 147 HOH WAT . 
M 6 HOH B 79 579 171 HOH WAT . 
M 6 HOH B 80 580 125 HOH WAT . 
M 6 HOH B 81 581 161 HOH WAT . 
M 6 HOH B 82 582 34 HOH WAT . 
M 6 HOH B 83 583 75 HOH WAT . 
M 6 HOH B 84 584 87 HOH WAT . 
M 6 HOH B 85 585 8 HOH WAT . 
M 6 HOH B 86 586 73 HOH WAT . 
M 6 HOH B 87 587 153 HOH WAT . 
M 6 HOH B 88 588 186 HOH WAT . 
M 6 HOH B 89 589 53 HOH WAT . 
M 6 HOH B 90 590 69 HOH WAT . 
M 6 HOH B 91 591 181 HOH WAT . 
M 6 HOH B 92 592 154 HOH WAT . 
M 6 HOH B 93 593 156 HOH WAT . 
M 6 HOH B 94 594 90 HOH WAT . 
M 6 HOH B 95 595 172 HOH WAT . 
M 6 HOH B 96 596 166 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 UDP . . . C 2 15.033 7.034 -14.665 1 24.62 ? N1 UDP 401 A 1 
HETATM 2 C C2 UDP . . . C 2 14.922 5.875 -13.919 1 29.42 ? C2 UDP 401 A 1 
HETATM 3 N N3 UDP . . . C 2 16.084 5.47 -13.291 1 27.43 ? N3 UDP 401 A 1 
HETATM 4 C C4 UDP . . . C 2 17.322 6.067 -13.373 1 29.15 ? C4 UDP 401 A 1 
HETATM 5 C C5 UDP . . . C 2 17.377 7.218 -14.231 1 28.05 ? C5 UDP 401 A 1 
HETATM 6 C C6 UDP . . . C 2 16.264 7.63 -14.872 1 25.49 ? C6 UDP 401 A 1 
HETATM 7 O O2 UDP . . . C 2 13.867 5.279 -13.768 1 29.92 ? O2 UDP 401 A 1 
HETATM 8 O O4 UDP . . . C 2 18.277 5.587 -12.742 1 30.87 ? O4 UDP 401 A 1 
HETATM 9 C C1' UDP . . . C 2 13.834 7.486 -15.458 1 24.38 ? C1' UDP 401 A 1 
HETATM 10 C C2' UDP . . . C 2 13.472 8.976 -15.351 1 26.74 ? C2' UDP 401 A 1 
HETATM 11 O O2' UDP . . . C 2 12.544 9.268 -14.311 1 27.99 ? O2' UDP 401 A 1 
HETATM 12 C C3' UDP . . . C 2 12.824 9.225 -16.721 1 25.47 ? C3' UDP 401 A 1 
HETATM 13 C C4' UDP . . . C 2 13.67 8.362 -17.641 1 27.67 ? C4' UDP 401 A 1 
HETATM 14 O O4' UDP . . . C 2 14.138 7.265 -16.824 1 26.35 ? O4' UDP 401 A 1 
HETATM 15 O O3' UDP . . . C 2 11.507 8.702 -16.803 1 26.5 ? O3' UDP 401 A 1 
HETATM 16 C C5' UDP . . . C 2 14.838 9.074 -18.26 1 24.87 ? C5' UDP 401 A 1 
HETATM 17 O O5' UDP . . . C 2 15.681 8.124 -18.933 1 27.85 ? O5' UDP 401 A 1 
HETATM 18 P PA UDP . . . C 2 17.06 8.574 -19.574 1 31.05 ? PA UDP 401 A 1 
HETATM 19 O O1A UDP . . . C 2 17.66 9.783 -18.97 1 25.82 ? O1A UDP 401 A 1 
HETATM 20 O O2A UDP . . . C 2 17.941 7.348 -19.536 1 27.94 ? O2A UDP 401 A 1 
HETATM 21 O O3A UDP . . . C 2 16.674 8.85 -21.102 1 31.68 ? O3A UDP 401 A 1 
HETATM 22 P PB UDP . . . C 2 16.22 10.168 -21.879 1 32.08 ? PB UDP 401 A 1 
HETATM 23 O O1B UDP . . . C 2 17.216 11.205 -21.884 1 28.24 ? O1B UDP 401 A 1 
HETATM 24 O O2B UDP . . . C 2 15.942 9.668 -23.281 1 32 ? O2B UDP 401 A 1 
HETATM 25 O O3B UDP . . . C 2 14.931 10.65 -21.268 1 31.14 ? O3B UDP 401 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           25 
#