data_5EOD # _model_server_result.job_id qkJEdqOqvLeR3CyM9HF0sg _model_server_result.datetime_utc '2024-10-12 16:36:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eod # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":903}' # _entry.id 5EOD # _exptl.entry_id 5EOD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EOD _cell.length_a 81.065 _cell.length_b 81.065 _cell.length_c 253.084 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EOD _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 1 A CYS 2 1_555 A SG CYS 84 A CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf2 A SG CYS 27 A CYS 28 1_555 A SG CYS 57 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf3 A SG CYS 31 A CYS 32 1_555 A SG CYS 37 A CYS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? disulf ? disulf4 A SG CYS 91 A CYS 92 1_555 A SG CYS 174 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 A SG CYS 117 A CYS 118 1_555 A SG CYS 146 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf6 A SG CYS 121 A CYS 122 1_555 A SG CYS 127 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? disulf ? disulf7 A SG CYS 181 A CYS 182 1_555 A SG CYS 264 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 A SG CYS 207 A CYS 208 1_555 A SG CYS 236 A CYS 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf9 A SG CYS 211 A CYS 212 1_555 A SG CYS 217 A CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? disulf ? disulf10 A SG CYS 272 A CYS 273 1_555 A SG CYS 355 A CYS 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf11 A SG CYS 298 A CYS 299 1_555 A SG CYS 327 A CYS 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf12 A SG CYS 302 A CYS 303 1_555 A SG CYS 308 A CYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? disulf ? disulf13 A SG CYS 361 A CYS 362 1_555 A SG CYS 481 A CYS 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf14 A SG CYS 397 A CYS 398 1_555 A SG CYS 413 A CYS 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf15 A SG CYS 495 A CYS 496 1_555 A SG CYS 562 A CYS 563 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf16 A SG CYS 526 A CYS 527 1_555 A SG CYS 541 A CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 71 A ASN 72 1_555 C C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? covale ? covale2 A ND2 ASN 107 A ASN 108 1_555 D C1 NAG . A NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.482 ? covale ? covale3 A ND2 ASN 431 A ASN 432 1_555 E C1 NAG . A NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5EOD _atom_sites.fract_transf_matrix[1][1] 0.012336 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012336 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 901 901 NAG NAG . D 3 NAG A 1 902 910 NAG NAG . E 3 NAG A 1 903 920 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 3 -42.349 -20.561 -29.679 1 128.38 ? C1 NAG 903 A 1 HETATM 2 C C2 NAG . . . E 3 -42.571 -22.111 -29.694 1 134.43 ? C2 NAG 903 A 1 HETATM 3 C C3 NAG . . . E 3 -43.899 -22.528 -29.038 1 131.01 ? C3 NAG 903 A 1 HETATM 4 C C4 NAG . . . E 3 -44.241 -21.651 -27.837 1 120.58 ? C4 NAG 903 A 1 HETATM 5 C C5 NAG . . . E 3 -44.449 -20.212 -28.332 1 117.06 ? C5 NAG 903 A 1 HETATM 6 C C6 NAG . . . E 3 -44.257 -19.23 -27.183 1 113.27 ? C6 NAG 903 A 1 HETATM 7 C C7 NAG . . . E 3 -42.048 -23.877 -31.459 1 123.66 ? C7 NAG 903 A 1 HETATM 8 C C8 NAG . . . E 3 -41.191 -24.717 -30.539 1 111.39 ? C8 NAG 903 A 1 HETATM 9 N N2 NAG . . . E 3 -42.611 -22.727 -31.024 1 132.22 ? N2 NAG 903 A 1 HETATM 10 O O3 NAG . . . E 3 -43.896 -23.922 -28.692 1 137.58 ? O3 NAG 903 A 1 HETATM 11 O O4 NAG . . . E 3 -45.402 -22.157 -27.177 1 114.68 ? O4 NAG 903 A 1 HETATM 12 O O5 NAG . . . E 3 -43.601 -19.856 -29.467 1 119.69 ? O5 NAG 903 A 1 HETATM 13 O O6 NAG . . . E 3 -44.637 -17.926 -27.631 1 100.79 ? O6 NAG 903 A 1 HETATM 14 O O7 NAG . . . E 3 -42.221 -24.225 -32.618 1 116.61 ? O7 NAG 903 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #