data_5EOU # _model_server_result.job_id j07o60wBhtFdHQqoq_4GZg _model_server_result.datetime_utc '2024-11-05 00:31:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eou # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":401}' # _entry.id 5EOU # _exptl.entry_id 5EOU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5EOU _cell.length_a 131.79 _cell.length_b 131.79 _cell.length_c 78.993 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EOU _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 3 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,T 1 1 B,K,L,M,N,O,P,Q,R,S,U 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O TYR 42 A TYR 39 1_555 I NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? metalc ? metalc2 F O1 SO4 . A SO4 404 1_555 J MG MG . A MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc3 F O2 SO4 . A SO4 404 1_555 J MG MG . A MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc4 I NA NA . A NA 407 1_555 T O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.112 ? metalc ? metalc5 I NA NA . A NA 407 1_555 T O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc6 I NA NA . A NA 407 1_555 T O HOH . A HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.199 ? metalc ? metalc7 J MG MG . A MG 408 1_555 T O HOH . A HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc8 B O PRO 49 B PRO 46 1_555 R NA NA . B NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.164 ? metalc ? metalc9 K O1G ATP . B ATP 401 1_555 S MG MG . B MG 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc10 K O1B ATP . B ATP 401 1_555 S MG MG . B MG 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.819 ? metalc ? metalc11 R NA NA . B NA 408 1_555 U O HOH . B HOH 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.134 ? metalc ? metalc12 S MG MG . B MG 409 1_555 U O HOH . B HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc13 S MG MG . B MG 409 1_555 U O HOH . B HOH 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc14 S MG MG . B MG 409 1_555 U O HOH . B HOH 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 5EOU _atom_sites.fract_transf_matrix[1][1] 0.007588 _atom_sites.fract_transf_matrix[1][2] 0.004381 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008762 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012659 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 401 1 SO4 SO4 . D 2 SO4 A 1 402 2 SO4 SO4 . E 2 SO4 A 1 403 4 SO4 SO4 . F 2 SO4 A 1 404 7 SO4 SO4 . G 2 SO4 A 1 405 8 SO4 SO4 . H 3 CL A 1 406 5 CL CL . I 4 NA A 1 407 3 NA NA . J 5 MG A 1 408 2 MG MG . K 6 ATP B 1 401 1 ATP ATP . L 2 SO4 B 1 402 3 SO4 SO4 . M 2 SO4 B 1 403 5 SO4 SO4 . N 2 SO4 B 1 404 6 SO4 SO4 . O 3 CL B 1 405 3 CL CL . P 3 CL B 1 406 4 CL CL . Q 3 CL B 1 407 7 CL CL . R 4 NA B 1 408 2 NA NA . S 5 MG B 1 409 1 MG MG . T 7 HOH A 1 501 79 HOH HOH . T 7 HOH A 2 502 181 HOH HOH . T 7 HOH A 3 503 11 HOH HOH . T 7 HOH A 4 504 173 HOH HOH . T 7 HOH A 5 505 74 HOH HOH . T 7 HOH A 6 506 22 HOH HOH . T 7 HOH A 7 507 145 HOH HOH . T 7 HOH A 8 508 114 HOH HOH . T 7 HOH A 9 509 164 HOH HOH . T 7 HOH A 10 510 80 HOH HOH . T 7 HOH A 11 511 9 HOH HOH . T 7 HOH A 12 512 54 HOH HOH . T 7 HOH A 13 513 55 HOH HOH . T 7 HOH A 14 514 69 HOH HOH . T 7 HOH A 15 515 75 HOH HOH . T 7 HOH A 16 516 188 HOH HOH . T 7 HOH A 17 517 102 HOH HOH . T 7 HOH A 18 518 19 HOH HOH . T 7 HOH A 19 519 108 HOH HOH . T 7 HOH A 20 520 147 HOH HOH . T 7 HOH A 21 521 20 HOH HOH . T 7 HOH A 22 522 136 HOH HOH . T 7 HOH A 23 523 113 HOH HOH . T 7 HOH A 24 524 174 HOH HOH . T 7 HOH A 25 525 21 HOH HOH . T 7 HOH A 26 526 162 HOH HOH . T 7 HOH A 27 527 99 HOH HOH . T 7 HOH A 28 528 155 HOH HOH . T 7 HOH A 29 529 161 HOH HOH . T 7 HOH A 30 530 118 HOH HOH . T 7 HOH A 31 531 137 HOH HOH . T 7 HOH A 32 532 100 HOH HOH . T 7 HOH A 33 533 143 HOH HOH . T 7 HOH A 34 534 183 HOH HOH . T 7 HOH A 35 535 117 HOH HOH . T 7 HOH A 36 536 127 HOH HOH . T 7 HOH A 37 537 142 HOH HOH . T 7 HOH A 38 538 187 HOH HOH . T 7 HOH A 39 539 165 HOH HOH . U 7 HOH B 1 501 178 HOH HOH . U 7 HOH B 2 502 182 HOH HOH . U 7 HOH B 3 503 77 HOH HOH . U 7 HOH B 4 504 130 HOH HOH . U 7 HOH B 5 505 2 HOH HOH . U 7 HOH B 6 506 185 HOH HOH . U 7 HOH B 7 507 3 HOH HOH . U 7 HOH B 8 508 41 HOH HOH . U 7 HOH B 9 509 36 HOH HOH . U 7 HOH B 10 510 184 HOH HOH . U 7 HOH B 11 511 157 HOH HOH . U 7 HOH B 12 512 129 HOH HOH . U 7 HOH B 13 513 45 HOH HOH . U 7 HOH B 14 514 175 HOH HOH . U 7 HOH B 15 515 63 HOH HOH . U 7 HOH B 16 516 38 HOH HOH . U 7 HOH B 17 517 171 HOH HOH . U 7 HOH B 18 518 6 HOH HOH . U 7 HOH B 19 519 120 HOH HOH . U 7 HOH B 20 520 10 HOH HOH . U 7 HOH B 21 521 133 HOH HOH . U 7 HOH B 22 522 81 HOH HOH . U 7 HOH B 23 523 167 HOH HOH . U 7 HOH B 24 524 132 HOH HOH . U 7 HOH B 25 525 152 HOH HOH . U 7 HOH B 26 526 42 HOH HOH . U 7 HOH B 27 527 172 HOH HOH . U 7 HOH B 28 528 149 HOH HOH . U 7 HOH B 29 529 32 HOH HOH . U 7 HOH B 30 530 37 HOH HOH . U 7 HOH B 31 531 168 HOH HOH . U 7 HOH B 32 532 4 HOH HOH . U 7 HOH B 33 533 125 HOH HOH . U 7 HOH B 34 534 131 HOH HOH . U 7 HOH B 35 535 176 HOH HOH . U 7 HOH B 36 536 16 HOH HOH . U 7 HOH B 37 537 46 HOH HOH . U 7 HOH B 38 538 144 HOH HOH . U 7 HOH B 39 539 61 HOH HOH . U 7 HOH B 40 540 134 HOH HOH . U 7 HOH B 41 541 15 HOH HOH . U 7 HOH B 42 542 169 HOH HOH . U 7 HOH B 43 543 62 HOH HOH . U 7 HOH B 44 544 73 HOH HOH . U 7 HOH B 45 545 1 HOH HOH . U 7 HOH B 46 546 64 HOH HOH . U 7 HOH B 47 547 177 HOH HOH . U 7 HOH B 48 548 52 HOH HOH . U 7 HOH B 49 549 156 HOH HOH . U 7 HOH B 50 550 47 HOH HOH . U 7 HOH B 51 551 154 HOH HOH . U 7 HOH B 52 552 65 HOH HOH . U 7 HOH B 53 553 35 HOH HOH . U 7 HOH B 54 554 148 HOH HOH . U 7 HOH B 55 555 170 HOH HOH . U 7 HOH B 56 556 71 HOH HOH . U 7 HOH B 57 557 91 HOH HOH . U 7 HOH B 58 558 98 HOH HOH . U 7 HOH B 59 559 76 HOH HOH . U 7 HOH B 60 560 186 HOH HOH . U 7 HOH B 61 561 179 HOH HOH . U 7 HOH B 62 562 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . K 6 364.513 232.667 189.296 0.8 59.65 ? PG ATP 401 B 1 HETATM 2 O O1G ATP . . . K 6 365.729 232.409 188.475 0.8 57.6 ? O1G ATP 401 B 1 HETATM 3 O O2G ATP . . . K 6 364.617 232.214 190.708 0.8 67.83 ? O2G ATP 401 B 1 HETATM 4 O O3G ATP . . . K 6 363.245 232.246 188.63 0.8 62.58 ? O3G ATP 401 B 1 HETATM 5 P PB ATP . . . K 6 364.294 235.131 188.059 0.8 72.03 ? PB ATP 401 B 1 HETATM 6 O O1B ATP . . . K 6 364.797 234.284 186.926 0.8 77.19 ? O1B ATP 401 B 1 HETATM 7 O O2B ATP . . . K 6 362.921 235.722 188.05 0.8 74.61 ? O2B ATP 401 B 1 HETATM 8 O O3B ATP . . . K 6 364.428 234.253 189.383 0.8 74.84 ? O3B ATP 401 B 1 HETATM 9 P PA ATP . . . K 6 365.333 237.682 187.386 0.8 54.22 ? PA ATP 401 B 1 HETATM 10 O O1A ATP . . . K 6 366.193 237.509 186.185 0.8 50.73 ? O1A ATP 401 B 1 HETATM 11 O O2A ATP . . . K 6 363.932 238.16 187.234 0.8 59.41 ? O2A ATP 401 B 1 HETATM 12 O O3A ATP . . . K 6 365.314 236.346 188.268 0.8 89.33 ? O3A ATP 401 B 1 HETATM 13 O O5' ATP . . . K 6 366.068 238.639 188.416 0.8 68.21 ? O5' ATP 401 B 1 HETATM 14 C C5' ATP . . . K 6 365.416 239.024 189.618 0.8 66.52 ? C5' ATP 401 B 1 HETATM 15 C C4' ATP . . . K 6 366.465 239.171 190.702 0.8 66.45 ? C4' ATP 401 B 1 HETATM 16 O O4' ATP . . . K 6 367.37 240.185 190.298 0.8 66.46 ? O4' ATP 401 B 1 HETATM 17 C C3' ATP . . . K 6 365.866 239.635 192.009 0.8 65.66 ? C3' ATP 401 B 1 HETATM 18 O O3' ATP . . . K 6 366.562 239.001 193.076 0.8 63.06 ? O3' ATP 401 B 1 HETATM 19 C C2' ATP . . . K 6 366.202 241.097 192.083 0.8 68.61 ? C2' ATP 401 B 1 HETATM 20 O O2' ATP . . . K 6 366.405 241.478 193.432 0.8 71.07 ? O2' ATP 401 B 1 HETATM 21 C C1' ATP . . . K 6 367.499 241.166 191.317 0.8 67.99 ? C1' ATP 401 B 1 HETATM 22 N N9 ATP . . . K 6 367.728 242.491 190.716 0.8 68.01 ? N9 ATP 401 B 1 HETATM 23 C C8 ATP . . . K 6 366.926 243.096 189.837 0.8 68.44 ? C8 ATP 401 B 1 HETATM 24 N N7 ATP . . . K 6 367.43 244.294 189.469 0.8 69.7 ? N7 ATP 401 B 1 HETATM 25 C C5 ATP . . . K 6 368.583 244.468 190.125 0.8 69.83 ? C5 ATP 401 B 1 HETATM 26 C C6 ATP . . . K 6 369.62 245.519 190.194 0.8 69.64 ? C6 ATP 401 B 1 HETATM 27 N N6 ATP . . . K 6 369.509 246.652 189.47 0.8 69.95 ? N6 ATP 401 B 1 HETATM 28 N N1 ATP . . . K 6 370.671 245.312 191.001 0.8 66.53 ? N1 ATP 401 B 1 HETATM 29 C C2 ATP . . . K 6 370.777 244.188 191.723 0.8 66.68 ? C2 ATP 401 B 1 HETATM 30 N N3 ATP . . . K 6 369.878 243.195 191.712 0.8 65.89 ? N3 ATP 401 B 1 HETATM 31 C C4 ATP . . . K 6 368.773 243.275 190.947 0.8 68.66 ? C4 ATP 401 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #