data_5EOX
#
_model_server_result.job_id            5UMgZlq8JcN71QLT8OMgOQ 
_model_server_result.datetime_utc      '2024-11-05 00:29:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5eox 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    5EOX 
#
_exptl.entry_id    5EOX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5EOX 
_cell.length_a            41.562 
_cell.length_b            111.355 
_cell.length_c            150.384 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5EOX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C O3B ADP . A ADP 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.85 ? 
metalc ? metalc2 D MG MG . A MG 402 1_555 G O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc3 D MG MG . A MG 402 1_555 G O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc4 D MG MG . A MG 402 1_555 G O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
metalc ? metalc5 D MG MG . A MG 402 1_555 G O HOH . A HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? 
metalc ? metalc6 D MG MG . A MG 402 1_555 G O HOH . A HOH 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc7 E O1B ADP . B ADP 401 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? 
metalc ? metalc8 F MG MG . B MG 402 1_555 H O HOH . B HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc9 F MG MG . B MG 402 1_555 H O HOH . B HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? 
metalc ? metalc10 F MG MG . B MG 402 1_555 H O HOH . B HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     5EOX 
_atom_sites.fract_transf_matrix[1][1]    0.02406 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00898 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00665 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADP A 1 401 1 ADP ADP . 
D 3 MG A 1 402 1 MG MG . 
E 2 ADP B 1 401 1 ADP ADP . 
F 3 MG B 1 402 1 MG MG . 
G 4 HOH A 1 501 68 HOH HOH . 
G 4 HOH A 2 502 21 HOH HOH . 
G 4 HOH A 3 503 77 HOH HOH . 
G 4 HOH A 4 504 81 HOH HOH . 
G 4 HOH A 5 505 54 HOH HOH . 
G 4 HOH A 6 506 19 HOH HOH . 
G 4 HOH A 7 507 87 HOH HOH . 
G 4 HOH A 8 508 80 HOH HOH . 
G 4 HOH A 9 509 51 HOH HOH . 
G 4 HOH A 10 510 15 HOH HOH . 
G 4 HOH A 11 511 64 HOH HOH . 
G 4 HOH A 12 512 10 HOH HOH . 
G 4 HOH A 13 513 32 HOH HOH . 
G 4 HOH A 14 514 1 HOH HOH . 
G 4 HOH A 15 515 12 HOH HOH . 
G 4 HOH A 16 516 43 HOH HOH . 
G 4 HOH A 17 517 50 HOH HOH . 
G 4 HOH A 18 518 72 HOH HOH . 
G 4 HOH A 19 519 75 HOH HOH . 
G 4 HOH A 20 520 59 HOH HOH . 
G 4 HOH A 21 521 3 HOH HOH . 
G 4 HOH A 22 522 34 HOH HOH . 
G 4 HOH A 23 523 29 HOH HOH . 
G 4 HOH A 24 524 79 HOH HOH . 
G 4 HOH A 25 525 30 HOH HOH . 
G 4 HOH A 26 526 17 HOH HOH . 
G 4 HOH A 27 527 2 HOH HOH . 
G 4 HOH A 28 528 18 HOH HOH . 
G 4 HOH A 29 529 52 HOH HOH . 
G 4 HOH A 30 530 8 HOH HOH . 
G 4 HOH A 31 531 67 HOH HOH . 
G 4 HOH A 32 532 13 HOH HOH . 
G 4 HOH A 33 533 4 HOH HOH . 
G 4 HOH A 34 534 35 HOH HOH . 
G 4 HOH A 35 535 16 HOH HOH . 
G 4 HOH A 36 536 53 HOH HOH . 
G 4 HOH A 37 537 37 HOH HOH . 
G 4 HOH A 38 538 47 HOH HOH . 
G 4 HOH A 39 539 78 HOH HOH . 
G 4 HOH A 40 540 31 HOH HOH . 
G 4 HOH A 41 541 61 HOH HOH . 
G 4 HOH A 42 542 62 HOH HOH . 
G 4 HOH A 43 543 42 HOH HOH . 
G 4 HOH A 44 544 69 HOH HOH . 
H 4 HOH B 1 501 76 HOH HOH . 
H 4 HOH B 2 502 27 HOH HOH . 
H 4 HOH B 3 503 58 HOH HOH . 
H 4 HOH B 4 504 38 HOH HOH . 
H 4 HOH B 5 505 23 HOH HOH . 
H 4 HOH B 6 506 70 HOH HOH . 
H 4 HOH B 7 507 56 HOH HOH . 
H 4 HOH B 8 508 82 HOH HOH . 
H 4 HOH B 9 509 22 HOH HOH . 
H 4 HOH B 10 510 83 HOH HOH . 
H 4 HOH B 11 511 55 HOH HOH . 
H 4 HOH B 12 512 28 HOH HOH . 
H 4 HOH B 13 513 36 HOH HOH . 
H 4 HOH B 14 514 49 HOH HOH . 
H 4 HOH B 15 515 66 HOH HOH . 
H 4 HOH B 16 516 6 HOH HOH . 
H 4 HOH B 17 517 71 HOH HOH . 
H 4 HOH B 18 518 26 HOH HOH . 
H 4 HOH B 19 519 57 HOH HOH . 
H 4 HOH B 20 520 84 HOH HOH . 
H 4 HOH B 21 521 24 HOH HOH . 
H 4 HOH B 22 522 60 HOH HOH . 
H 4 HOH B 23 523 40 HOH HOH . 
H 4 HOH B 24 524 48 HOH HOH . 
H 4 HOH B 25 525 33 HOH HOH . 
H 4 HOH B 26 526 74 HOH HOH . 
H 4 HOH B 27 527 73 HOH HOH . 
H 4 HOH B 28 528 11 HOH HOH . 
H 4 HOH B 29 529 9 HOH HOH . 
H 4 HOH B 30 530 41 HOH HOH . 
H 4 HOH B 31 531 7 HOH HOH . 
H 4 HOH B 32 532 45 HOH HOH . 
H 4 HOH B 33 533 63 HOH HOH . 
H 4 HOH B 34 534 5 HOH HOH . 
H 4 HOH B 35 535 46 HOH HOH . 
H 4 HOH B 36 536 88 HOH HOH . 
H 4 HOH B 37 537 65 HOH HOH . 
H 4 HOH B 38 538 14 HOH HOH . 
H 4 HOH B 39 539 20 HOH HOH . 
H 4 HOH B 40 540 25 HOH HOH . 
H 4 HOH B 41 541 39 HOH HOH . 
H 4 HOH B 42 542 86 HOH HOH . 
H 4 HOH B 43 543 44 HOH HOH . 
H 4 HOH B 44 544 85 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . E 2 -25.251 135.114 46.455 1 85.43 ? PB ADP 401 B 1 
HETATM 2 O O1B ADP . . . E 2 -26.098 135.009 45.214 1 89.92 ? O1B ADP 401 B 1 
HETATM 3 O O2B ADP . . . E 2 -24.44 136.376 46.543 1 90.33 ? O2B ADP 401 B 1 
HETATM 4 O O3B ADP . . . E 2 -25.983 134.779 47.723 1 89.27 ? O3B ADP 401 B 1 
HETATM 5 P PA ADP . . . E 2 -24.457 132.541 45.628 1 70.61 ? PA ADP 401 B 1 
HETATM 6 O O1A ADP . . . E 2 -23.515 132.353 44.477 1 77.07 ? O1A ADP 401 B 1 
HETATM 7 O O2A ADP . . . E 2 -25.938 132.467 45.393 1 72.25 ? O2A ADP 401 B 1 
HETATM 8 O O3A ADP . . . E 2 -24.131 133.974 46.275 1 83.13 ? O3A ADP 401 B 1 
HETATM 9 O O5' ADP . . . E 2 -24.036 131.478 46.75 1 69.36 ? O5' ADP 401 B 1 
HETATM 10 C C5' ADP . . . E 2 -23.429 131.893 47.966 1 67.6 ? C5' ADP 401 B 1 
HETATM 11 C C4' ADP . . . E 2 -23.373 130.713 48.925 1 65.26 ? C4' ADP 401 B 1 
HETATM 12 O O4' ADP . . . E 2 -23.359 129.47 48.226 1 61.32 ? O4' ADP 401 B 1 
HETATM 13 C C3' ADP . . . E 2 -22.119 130.751 49.778 1 62.65 ? C3' ADP 401 B 1 
HETATM 14 O O3' ADP . . . E 2 -22.496 130.908 51.142 1 65.73 ? O3' ADP 401 B 1 
HETATM 15 C C2' ADP . . . E 2 -21.462 129.402 49.594 1 59.69 ? C2' ADP 401 B 1 
HETATM 16 O O2' ADP . . . E 2 -21.08 128.862 50.857 1 61.04 ? O2' ADP 401 B 1 
HETATM 17 C C1' ADP . . . E 2 -22.537 128.554 48.942 1 59.17 ? C1' ADP 401 B 1 
HETATM 18 N N9 ADP . . . E 2 -21.946 127.533 48.048 1 58.22 ? N9 ADP 401 B 1 
HETATM 19 C C8 ADP . . . E 2 -21.307 127.765 46.893 1 58.35 ? C8 ADP 401 B 1 
HETATM 20 N N7 ADP . . . E 2 -20.887 126.609 46.325 1 56.66 ? N7 ADP 401 B 1 
HETATM 21 C C5 ADP . . . E 2 -21.262 125.606 47.13 1 57.96 ? C5 ADP 401 B 1 
HETATM 22 C C6 ADP . . . E 2 -21.138 124.135 47.126 1 61.32 ? C6 ADP 401 B 1 
HETATM 23 N N6 ADP . . . E 2 -20.511 123.49 46.118 1 66.26 ? N6 ADP 401 B 1 
HETATM 24 N N1 ADP . . . E 2 -21.67 123.457 48.162 1 64.17 ? N1 ADP 401 B 1 
HETATM 25 C C2 ADP . . . E 2 -22.296 124.087 49.168 1 59.08 ? C2 ADP 401 B 1 
HETATM 26 N N3 ADP . . . E 2 -22.445 125.418 49.236 1 60.41 ? N3 ADP 401 B 1 
HETATM 27 C C4 ADP . . . E 2 -21.957 126.221 48.266 1 61.04 ? C4 ADP 401 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           27 
#