data_5EP6
#
_model_server_result.job_id            FhjNLvh8KTPcP1AfGr7dlA 
_model_server_result.datetime_utc      '2024-11-04 22:33:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ep6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":802}' 
#
_entry.id    5EP6 
#
_exptl.entry_id    5EP6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5EP6 
_cell.length_a            41.36 
_cell.length_b            50.113 
_cell.length_c            84.416 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5EP6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,G,J,L 1 1 
B,D,F,H,I,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5EP6 
_atom_sites.fract_transf_matrix[1][1]    0.024178 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019955 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011846 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL A 1 301 4 GOL GOL . 
F 3 GOL C 1 301 5 GOL GOL . 
G 3 GOL B 1 801 3 GOL GOL . 
H 3 GOL D 1 801 2 GOL GOL . 
I 3 GOL D 1 802 6 GOL GOL . 
J 4 HOH A 1 401 91 HOH HOH . 
J 4 HOH A 2 402 97 HOH HOH . 
J 4 HOH A 3 403 25 HOH HOH . 
J 4 HOH A 4 404 11 HOH HOH . 
J 4 HOH A 5 405 52 HOH HOH . 
J 4 HOH A 6 406 26 HOH HOH . 
J 4 HOH A 7 407 157 HOH HOH . 
J 4 HOH A 8 408 1 HOH HOH . 
J 4 HOH A 9 409 55 HOH HOH . 
J 4 HOH A 10 410 61 HOH HOH . 
J 4 HOH A 11 411 14 HOH HOH . 
J 4 HOH A 12 412 15 HOH HOH . 
J 4 HOH A 13 413 95 HOH HOH . 
J 4 HOH A 14 414 51 HOH HOH . 
J 4 HOH A 15 415 34 HOH HOH . 
J 4 HOH A 16 416 20 HOH HOH . 
J 4 HOH A 17 417 3 HOH HOH . 
J 4 HOH A 18 418 30 HOH HOH . 
J 4 HOH A 19 419 22 HOH HOH . 
J 4 HOH A 20 420 49 HOH HOH . 
J 4 HOH A 21 421 92 HOH HOH . 
J 4 HOH A 22 422 97 HOH HOH . 
J 4 HOH A 23 423 85 HOH HOH . 
K 4 HOH C 1 401 3 HOH HOH . 
K 4 HOH C 2 402 94 HOH HOH . 
K 4 HOH C 3 403 80 HOH HOH . 
K 4 HOH C 4 404 1 HOH HOH . 
K 4 HOH C 5 405 31 HOH HOH . 
K 4 HOH C 6 406 87 HOH HOH . 
K 4 HOH C 7 407 42 HOH HOH . 
K 4 HOH C 8 408 48 HOH HOH . 
K 4 HOH C 9 409 115 HOH HOH . 
K 4 HOH C 10 410 32 HOH HOH . 
K 4 HOH C 11 411 71 HOH HOH . 
K 4 HOH C 12 412 8 HOH HOH . 
K 4 HOH C 13 413 19 HOH HOH . 
K 4 HOH C 14 414 138 HOH HOH . 
K 4 HOH C 15 415 44 HOH HOH . 
K 4 HOH C 16 416 12 HOH HOH . 
K 4 HOH C 17 417 176 HOH HOH . 
K 4 HOH C 18 418 144 HOH HOH . 
K 4 HOH C 19 419 19 HOH HOH . 
K 4 HOH C 20 420 21 HOH HOH . 
K 4 HOH C 21 421 29 HOH HOH . 
K 4 HOH C 22 422 26 HOH HOH . 
K 4 HOH C 23 423 90 HOH HOH . 
K 4 HOH C 24 424 120 HOH HOH . 
K 4 HOH C 25 425 136 HOH HOH . 
L 4 HOH B 1 901 91 HOH HOH . 
L 4 HOH B 2 902 22 HOH HOH . 
L 4 HOH B 3 903 4 HOH HOH . 
L 4 HOH B 4 904 33 HOH HOH . 
L 4 HOH B 5 905 100 HOH HOH . 
L 4 HOH B 6 906 68 HOH HOH . 
L 4 HOH B 7 907 72 HOH HOH . 
L 4 HOH B 8 908 82 HOH HOH . 
L 4 HOH B 9 909 24 HOH HOH . 
L 4 HOH B 10 910 1 HOH HOH . 
L 4 HOH B 11 911 60 HOH HOH . 
L 4 HOH B 12 912 17 HOH HOH . 
L 4 HOH B 13 913 12 HOH HOH . 
L 4 HOH B 14 914 46 HOH HOH . 
L 4 HOH B 15 915 73 HOH HOH . 
L 4 HOH B 16 916 64 HOH HOH . 
L 4 HOH B 17 917 5 HOH HOH . 
L 4 HOH B 18 918 26 HOH HOH . 
L 4 HOH B 19 919 123 HOH HOH . 
L 4 HOH B 20 920 140 HOH HOH . 
L 4 HOH B 21 921 83 HOH HOH . 
L 4 HOH B 22 922 175 HOH HOH . 
L 4 HOH B 23 923 95 HOH HOH . 
L 4 HOH B 24 924 117 HOH HOH . 
L 4 HOH B 25 925 40 HOH HOH . 
L 4 HOH B 26 926 92 HOH HOH . 
L 4 HOH B 27 927 137 HOH HOH . 
M 4 HOH D 1 901 67 HOH HOH . 
M 4 HOH D 2 902 18 HOH HOH . 
M 4 HOH D 3 903 37 HOH HOH . 
M 4 HOH D 4 904 96 HOH HOH . 
M 4 HOH D 5 905 61 HOH HOH . 
M 4 HOH D 6 906 66 HOH HOH . 
M 4 HOH D 7 907 46 HOH HOH . 
M 4 HOH D 8 908 22 HOH HOH . 
M 4 HOH D 9 909 88 HOH HOH . 
M 4 HOH D 10 910 110 HOH HOH . 
M 4 HOH D 11 911 28 HOH HOH . 
M 4 HOH D 12 912 23 HOH HOH . 
M 4 HOH D 13 913 89 HOH HOH . 
M 4 HOH D 14 914 90 HOH HOH . 
M 4 HOH D 15 915 41 HOH HOH . 
M 4 HOH D 16 916 27 HOH HOH . 
M 4 HOH D 17 917 78 HOH HOH . 
M 4 HOH D 18 918 43 HOH HOH . 
M 4 HOH D 19 919 125 HOH HOH . 
M 4 HOH D 20 920 35 HOH HOH . 
M 4 HOH D 21 921 10 HOH HOH . 
M 4 HOH D 22 922 75 HOH HOH . 
M 4 HOH D 23 923 173 HOH HOH . 
M 4 HOH D 24 924 104 HOH HOH . 
M 4 HOH D 25 925 50 HOH HOH . 
M 4 HOH D 26 926 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 3 38.845 35.234 38.221 1 58.42 ? C1 GOL 802 D 1 
HETATM 2 O O1 GOL . . . I 3 37.899 35.536 37.222 1 103.59 ? O1 GOL 802 D 1 
HETATM 3 C C2 GOL . . . I 3 38.329 35.661 39.592 1 95.97 ? C2 GOL 802 D 1 
HETATM 4 O O2 GOL . . . I 3 38.462 34.581 40.487 1 102.38 ? O2 GOL 802 D 1 
HETATM 5 C C3 GOL . . . I 3 39.152 36.834 40.117 1 91.45 ? C3 GOL 802 D 1 
HETATM 6 O O3 GOL . . . I 3 38.609 37.287 41.338 1 58.78 ? O3 GOL 802 D 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#