data_5EPG # _model_server_result.job_id '_BGOj8vV8OV1OeZpODQKaA' _model_server_result.datetime_utc '2024-10-14 15:13:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5epg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3003}' # _entry.id 5EPG # _exptl.entry_id 5EPG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 395.352 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EPG _cell.length_a 147.439 _cell.length_b 147.439 _cell.length_c 131.713 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EPG _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_554 y,x,-z-1 0 1 0 1 0 0 0 0 -1 0 0 -131.713 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 49 A CYS 49 1_555 C FE2 FES . A FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc2 A SG CYS 52 A CYS 52 1_555 C FE1 FES . A FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc3 A SG CYS 74 A CYS 74 1_555 C FE1 FES . A FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc4 A SG CYS 114 A CYS 114 1_555 B FE1 FES . A FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc5 A SG CYS 117 A CYS 117 1_555 B FE2 FES . A FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc6 A SG CYS 149 A CYS 149 1_555 B FE2 FES . A FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc7 A SG CYS 151 A CYS 151 1_555 B FE1 FES . A FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? # _chem_comp.formula 'C10 H14 N5 O6 P S2' _chem_comp.formula_weight 395.352 _chem_comp.id MTE _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 MTE doub 336 n y N1 C10 MTE sing 337 n y C2 N2 MTE sing 338 n n C2 N3 MTE sing 339 n y N2 HN21 MTE sing 340 n n N2 HN22 MTE sing 341 n n N3 C4 MTE sing 342 n y N3 HN3 MTE sing 343 n n C4 O4 MTE doub 344 n n C4 C9 MTE sing 345 n y N5 C6 MTE sing 346 n n N5 C9 MTE sing 347 n n N5 HN5 MTE sing 348 n n C6 C7 MTE sing 349 n n C6 C1' MTE sing 350 n n C6 H6 MTE sing 351 n n C7 N8 MTE sing 352 n n C7 O3' MTE sing 353 n n C7 H7 MTE sing 354 n n N8 C10 MTE sing 355 n n N8 HN8 MTE sing 356 n n C9 C10 MTE doub 357 n y C1' S1' MTE sing 358 n n C1' C2' MTE doub 359 n n S1' H1S MTE sing 360 n n C2' S2' MTE sing 361 n n C2' C3' MTE sing 362 n n S2' H2S MTE sing 363 n n C3' O3' MTE sing 364 n n C3' C4' MTE sing 365 n n C3' H3' MTE sing 366 n n C4' O4' MTE sing 367 n n C4' "H4'1" MTE sing 368 n n C4' "H4'2" MTE sing 369 n n O4' P MTE sing 370 n n P O1P MTE doub 371 n n P O2P MTE sing 372 n n P O3P MTE sing 373 n n O2P HOP2 MTE sing 374 n n O3P HOP3 MTE sing 375 n n # _atom_sites.entry_id 5EPG _atom_sites.fract_transf_matrix[1][1] 0.006782 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006782 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007592 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FES A 1 3001 3001 FES FES . C 2 FES A 1 3002 3002 FES FES . D 3 MTE A 1 3003 3003 MTE MTE . E 4 FAD A 1 3004 3006 FAD FAD . F 5 MOS A 1 3005 3004 MOS MOS . G 6 HOH A 1 3101 29 HOH HOH . G 6 HOH A 2 3102 47 HOH HOH . G 6 HOH A 3 3103 37 HOH HOH . G 6 HOH A 4 3104 38 HOH HOH . G 6 HOH A 5 3105 28 HOH HOH . G 6 HOH A 6 3106 14 HOH HOH . G 6 HOH A 7 3107 17 HOH HOH . G 6 HOH A 8 3108 36 HOH HOH . G 6 HOH A 9 3109 43 HOH HOH . G 6 HOH A 10 3110 21 HOH HOH . G 6 HOH A 11 3111 39 HOH HOH . G 6 HOH A 12 3112 50 HOH HOH . G 6 HOH A 13 3113 48 HOH HOH . G 6 HOH A 14 3114 42 HOH HOH . G 6 HOH A 15 3115 44 HOH HOH . G 6 HOH A 16 3116 18 HOH HOH . G 6 HOH A 17 3117 45 HOH HOH . G 6 HOH A 18 3118 32 HOH HOH . G 6 HOH A 19 3119 6 HOH HOH . G 6 HOH A 20 3120 31 HOH HOH . G 6 HOH A 21 3121 23 HOH HOH . G 6 HOH A 22 3122 16 HOH HOH . G 6 HOH A 23 3123 1 HOH HOH . G 6 HOH A 24 3124 22 HOH HOH . G 6 HOH A 25 3125 35 HOH HOH . G 6 HOH A 26 3126 34 HOH HOH . G 6 HOH A 27 3127 40 HOH HOH . G 6 HOH A 28 3128 41 HOH HOH . G 6 HOH A 29 3129 33 HOH HOH . G 6 HOH A 30 3130 15 HOH HOH . G 6 HOH A 31 3131 5 HOH HOH . G 6 HOH A 32 3132 24 HOH HOH . G 6 HOH A 33 3133 26 HOH HOH . G 6 HOH A 34 3134 13 HOH HOH . G 6 HOH A 35 3135 30 HOH HOH . G 6 HOH A 36 3136 11 HOH HOH . G 6 HOH A 37 3137 2 HOH HOH . G 6 HOH A 38 3138 3 HOH HOH . G 6 HOH A 39 3139 25 HOH HOH . G 6 HOH A 40 3140 27 HOH HOH . G 6 HOH A 41 3141 46 HOH HOH . G 6 HOH A 42 3142 4 HOH HOH . G 6 HOH A 43 3143 8 HOH HOH . G 6 HOH A 44 3144 19 HOH HOH . G 6 HOH A 45 3145 51 HOH HOH . G 6 HOH A 46 3146 10 HOH HOH . G 6 HOH A 47 3147 49 HOH HOH . G 6 HOH A 48 3148 20 HOH HOH . G 6 HOH A 49 3149 7 HOH HOH . G 6 HOH A 50 3150 9 HOH HOH . G 6 HOH A 51 3151 52 HOH HOH . G 6 HOH A 52 3152 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MTE . . . D 3 -36.078 -14.142 -45.239 1 98.85 ? N1 MTE 3003 A 1 HETATM 2 C C2 MTE . . . D 3 -36.802 -15.182 -45.793 1 106.47 ? C2 MTE 3003 A 1 HETATM 3 N N2 MTE . . . D 3 -37.983 -14.953 -46.435 1 96.99 ? N2 MTE 3003 A 1 HETATM 4 N N3 MTE . . . D 3 -36.372 -16.47 -45.729 1 108.17 ? N3 MTE 3003 A 1 HETATM 5 C C4 MTE . . . D 3 -35.207 -16.825 -45.118 1 106.08 ? C4 MTE 3003 A 1 HETATM 6 O O4 MTE . . . D 3 -34.817 -18.017 -45.065 1 98.02 ? O4 MTE 3003 A 1 HETATM 7 N N5 MTE . . . D 3 -33.218 -16.051 -43.824 1 95.32 ? N5 MTE 3003 A 1 HETATM 8 C C6 MTE . . . D 3 -32.68 -15.063 -42.894 1 94.31 ? C6 MTE 3003 A 1 HETATM 9 C C7 MTE . . . D 3 -32.772 -13.671 -43.516 1 96.74 ? C7 MTE 3003 A 1 HETATM 10 N N8 MTE . . . D 3 -34.113 -13.4 -44.055 1 104.64 ? N8 MTE 3003 A 1 HETATM 11 C C9 MTE . . . D 3 -34.359 -15.768 -44.509 1 100.96 ? C9 MTE 3003 A 1 HETATM 12 C C10 MTE . . . D 3 -34.884 -14.379 -44.595 1 100.82 ? C10 MTE 3003 A 1 HETATM 13 C C1' MTE . . . D 3 -31.262 -15.316 -42.443 1 93.9 ? C1' MTE 3003 A 1 HETATM 14 S S1' MTE . . . D 3 -30.782 -16.481 -41.312 1 100.75 ? S1' MTE 3003 A 1 HETATM 15 C C2' MTE . . . D 3 -30.257 -14.606 -42.9 1 94 ? C2' MTE 3003 A 1 HETATM 16 S S2' MTE . . . D 3 -28.785 -15.016 -42.175 1 87.03 ? S2' MTE 3003 A 1 HETATM 17 C C3' MTE . . . D 3 -30.439 -13.529 -43.951 1 98.54 ? C3' MTE 3003 A 1 HETATM 18 O O3' MTE . . . D 3 -31.76 -13.603 -44.524 1 91.38 ? O3' MTE 3003 A 1 HETATM 19 C C4' MTE . . . D 3 -29.331 -13.617 -45.023 1 105.85 ? C4' MTE 3003 A 1 HETATM 20 O O4' MTE . . . D 3 -29.681 -12.923 -46.235 1 121.44 ? O4' MTE 3003 A 1 HETATM 21 P P MTE . . . D 3 -29.36 -11.355 -46.465 1 131.71 ? P MTE 3003 A 1 HETATM 22 O O1P MTE . . . D 3 -29.633 -11.064 -47.937 1 110.29 ? O1P MTE 3003 A 1 HETATM 23 O O2P MTE . . . D 3 -30.271 -10.596 -45.521 1 138.14 ? O2P MTE 3003 A 1 HETATM 24 O O3P MTE . . . D 3 -27.922 -11.319 -46.027 1 123.43 ? O3P MTE 3003 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #