data_5EPG # _model_server_result.job_id Lds8_qGhhTGISlHPWN8dMw _model_server_result.datetime_utc '2024-11-28 16:29:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5epg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":3004}' # _entry.id 5EPG # _exptl.entry_id 5EPG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EPG _cell.length_a 147.439 _cell.length_b 147.439 _cell.length_c 131.713 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EPG _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_554 y,x,-z-1 0 1 0 1 0 0 0 0 -1 0 0 -131.713 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 49 A CYS 49 1_555 C FE2 FES . A FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc2 A SG CYS 52 A CYS 52 1_555 C FE1 FES . A FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc3 A SG CYS 74 A CYS 74 1_555 C FE1 FES . A FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc4 A SG CYS 114 A CYS 114 1_555 B FE1 FES . A FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc5 A SG CYS 117 A CYS 117 1_555 B FE2 FES . A FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc6 A SG CYS 149 A CYS 149 1_555 B FE2 FES . A FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc7 A SG CYS 151 A CYS 151 1_555 B FE1 FES . A FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 5EPG _atom_sites.fract_transf_matrix[1][1] 0.006782 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006782 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007592 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FES A 1 3001 3001 FES FES . C 2 FES A 1 3002 3002 FES FES . D 3 MTE A 1 3003 3003 MTE MTE . E 4 FAD A 1 3004 3006 FAD FAD . F 5 MOS A 1 3005 3004 MOS MOS . G 6 HOH A 1 3101 29 HOH HOH . G 6 HOH A 2 3102 47 HOH HOH . G 6 HOH A 3 3103 37 HOH HOH . G 6 HOH A 4 3104 38 HOH HOH . G 6 HOH A 5 3105 28 HOH HOH . G 6 HOH A 6 3106 14 HOH HOH . G 6 HOH A 7 3107 17 HOH HOH . G 6 HOH A 8 3108 36 HOH HOH . G 6 HOH A 9 3109 43 HOH HOH . G 6 HOH A 10 3110 21 HOH HOH . G 6 HOH A 11 3111 39 HOH HOH . G 6 HOH A 12 3112 50 HOH HOH . G 6 HOH A 13 3113 48 HOH HOH . G 6 HOH A 14 3114 42 HOH HOH . G 6 HOH A 15 3115 44 HOH HOH . G 6 HOH A 16 3116 18 HOH HOH . G 6 HOH A 17 3117 45 HOH HOH . G 6 HOH A 18 3118 32 HOH HOH . G 6 HOH A 19 3119 6 HOH HOH . G 6 HOH A 20 3120 31 HOH HOH . G 6 HOH A 21 3121 23 HOH HOH . G 6 HOH A 22 3122 16 HOH HOH . G 6 HOH A 23 3123 1 HOH HOH . G 6 HOH A 24 3124 22 HOH HOH . G 6 HOH A 25 3125 35 HOH HOH . G 6 HOH A 26 3126 34 HOH HOH . G 6 HOH A 27 3127 40 HOH HOH . G 6 HOH A 28 3128 41 HOH HOH . G 6 HOH A 29 3129 33 HOH HOH . G 6 HOH A 30 3130 15 HOH HOH . G 6 HOH A 31 3131 5 HOH HOH . G 6 HOH A 32 3132 24 HOH HOH . G 6 HOH A 33 3133 26 HOH HOH . G 6 HOH A 34 3134 13 HOH HOH . G 6 HOH A 35 3135 30 HOH HOH . G 6 HOH A 36 3136 11 HOH HOH . G 6 HOH A 37 3137 2 HOH HOH . G 6 HOH A 38 3138 3 HOH HOH . G 6 HOH A 39 3139 25 HOH HOH . G 6 HOH A 40 3140 27 HOH HOH . G 6 HOH A 41 3141 46 HOH HOH . G 6 HOH A 42 3142 4 HOH HOH . G 6 HOH A 43 3143 8 HOH HOH . G 6 HOH A 44 3144 19 HOH HOH . G 6 HOH A 45 3145 51 HOH HOH . G 6 HOH A 46 3146 10 HOH HOH . G 6 HOH A 47 3147 49 HOH HOH . G 6 HOH A 48 3148 20 HOH HOH . G 6 HOH A 49 3149 7 HOH HOH . G 6 HOH A 50 3150 9 HOH HOH . G 6 HOH A 51 3151 52 HOH HOH . G 6 HOH A 52 3152 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . E 4 -64.118 -37.836 -39.658 1 81.31 ? PA FAD 3004 A 1 HETATM 2 O O1A FAD . . . E 4 -64.749 -37.902 -41.046 1 75.11 ? O1A FAD 3004 A 1 HETATM 3 O O2A FAD . . . E 4 -62.628 -37.75 -39.501 1 80.14 ? O2A FAD 3004 A 1 HETATM 4 O O5B FAD . . . E 4 -64.629 -39.11 -38.813 1 90.89 ? O5B FAD 3004 A 1 HETATM 5 C C5B FAD . . . E 4 -64.211 -39.379 -37.472 1 89.76 ? C5B FAD 3004 A 1 HETATM 6 C C4B FAD . . . E 4 -65.051 -40.488 -36.841 1 84.65 ? C4B FAD 3004 A 1 HETATM 7 O O4B FAD . . . E 4 -66.421 -40.121 -36.965 1 84.34 ? O4B FAD 3004 A 1 HETATM 8 C C3B FAD . . . E 4 -64.894 -41.821 -37.56 1 82.82 ? C3B FAD 3004 A 1 HETATM 9 O O3B FAD . . . E 4 -64.747 -42.884 -36.623 1 79.39 ? O3B FAD 3004 A 1 HETATM 10 C C2B FAD . . . E 4 -66.152 -41.959 -38.399 1 82.16 ? C2B FAD 3004 A 1 HETATM 11 O O2B FAD . . . E 4 -66.542 -43.308 -38.622 1 77.51 ? O2B FAD 3004 A 1 HETATM 12 C C1B FAD . . . E 4 -67.138 -41.223 -37.531 1 82.9 ? C1B FAD 3004 A 1 HETATM 13 N N9A FAD . . . E 4 -68.332 -40.624 -38.142 1 80.4 ? N9A FAD 3004 A 1 HETATM 14 C C8A FAD . . . E 4 -68.415 -39.488 -38.857 1 78.66 ? C8A FAD 3004 A 1 HETATM 15 N N7A FAD . . . E 4 -69.71 -39.204 -39.175 1 82.76 ? N7A FAD 3004 A 1 HETATM 16 C C5A FAD . . . E 4 -70.446 -40.17 -38.606 1 84.38 ? C5A FAD 3004 A 1 HETATM 17 C C6A FAD . . . E 4 -71.877 -40.48 -38.517 1 81.38 ? C6A FAD 3004 A 1 HETATM 18 N N6A FAD . . . E 4 -72.735 -39.661 -39.149 1 81.79 ? N6A FAD 3004 A 1 HETATM 19 N N1A FAD . . . E 4 -72.25 -41.594 -37.824 1 81.07 ? N1A FAD 3004 A 1 HETATM 20 C C2A FAD . . . E 4 -71.361 -42.408 -37.198 1 80.09 ? C2A FAD 3004 A 1 HETATM 21 N N3A FAD . . . E 4 -70.033 -42.179 -37.225 1 83.92 ? N3A FAD 3004 A 1 HETATM 22 C C4A FAD . . . E 4 -69.542 -41.1 -37.91 1 85.16 ? C4A FAD 3004 A 1 HETATM 23 N N1 FAD . . . E 4 -61.672 -29.506 -32.653 1 100.11 ? N1 FAD 3004 A 1 HETATM 24 C C2 FAD . . . E 4 -61.99 -28.59 -31.725 1 101.62 ? C2 FAD 3004 A 1 HETATM 25 O O2 FAD . . . E 4 -62.924 -28.878 -30.959 1 101.27 ? O2 FAD 3004 A 1 HETATM 26 N N3 FAD . . . E 4 -61.351 -27.41 -31.601 1 108.74 ? N3 FAD 3004 A 1 HETATM 27 C C4 FAD . . . E 4 -60.348 -27.036 -32.41 1 106.85 ? C4 FAD 3004 A 1 HETATM 28 O O4 FAD . . . E 4 -59.78 -25.914 -32.274 1 116.97 ? O4 FAD 3004 A 1 HETATM 29 C C4X FAD . . . E 4 -59.952 -27.999 -33.469 1 90.98 ? C4X FAD 3004 A 1 HETATM 30 N N5 FAD . . . E 4 -58.948 -27.748 -34.324 1 91.55 ? N5 FAD 3004 A 1 HETATM 31 C C5X FAD . . . E 4 -58.59 -28.645 -35.271 1 87.14 ? C5X FAD 3004 A 1 HETATM 32 C C6 FAD . . . E 4 -57.537 -28.339 -36.14 1 83.34 ? C6 FAD 3004 A 1 HETATM 33 C C7 FAD . . . E 4 -57.15 -29.244 -37.117 1 79.99 ? C7 FAD 3004 A 1 HETATM 34 C C7M FAD . . . E 4 -56.031 -28.911 -38.063 1 78.74 ? C7M FAD 3004 A 1 HETATM 35 C C8 FAD . . . E 4 -57.868 -30.546 -37.221 1 85.59 ? C8 FAD 3004 A 1 HETATM 36 C C8M FAD . . . E 4 -57.497 -31.561 -38.264 1 83.79 ? C8M FAD 3004 A 1 HETATM 37 C C9 FAD . . . E 4 -58.917 -30.855 -36.363 1 88.54 ? C9 FAD 3004 A 1 HETATM 38 C C9A FAD . . . E 4 -59.316 -29.947 -35.384 1 84.59 ? C9A FAD 3004 A 1 HETATM 39 N N10 FAD . . . E 4 -60.374 -30.228 -34.499 1 79.1 ? N10 FAD 3004 A 1 HETATM 40 C C10 FAD . . . E 4 -60.69 -29.274 -33.534 1 87.96 ? C10 FAD 3004 A 1 HETATM 41 C C1' FAD . . . E 4 -61.122 -31.49 -34.524 1 76.91 ? C1' FAD 3004 A 1 HETATM 42 C C2' FAD . . . E 4 -62.146 -31.525 -35.654 1 71.46 ? C2' FAD 3004 A 1 HETATM 43 O O2' FAD . . . E 4 -63.115 -30.543 -35.302 1 69.25 ? O2' FAD 3004 A 1 HETATM 44 C C3' FAD . . . E 4 -62.748 -32.94 -35.838 1 70.61 ? C3' FAD 3004 A 1 HETATM 45 O O3' FAD . . . E 4 -61.821 -33.839 -36.44 1 68.62 ? O3' FAD 3004 A 1 HETATM 46 C C4' FAD . . . E 4 -63.897 -33.032 -36.809 1 74.22 ? C4' FAD 3004 A 1 HETATM 47 O O4' FAD . . . E 4 -65.046 -32.415 -36.244 1 84.32 ? O4' FAD 3004 A 1 HETATM 48 C C5' FAD . . . E 4 -64.238 -34.477 -37.148 1 73.18 ? C5' FAD 3004 A 1 HETATM 49 O O5' FAD . . . E 4 -65.202 -34.43 -38.197 1 74.43 ? O5' FAD 3004 A 1 HETATM 50 P P FAD . . . E 4 -64.946 -35.28 -39.529 1 70.79 ? P FAD 3004 A 1 HETATM 51 O O1P FAD . . . E 4 -63.681 -34.795 -40.153 1 76.93 ? O1P FAD 3004 A 1 HETATM 52 O O2P FAD . . . E 4 -66.127 -35.285 -40.47 1 71.05 ? O2P FAD 3004 A 1 HETATM 53 O O3P FAD . . . E 4 -64.749 -36.67 -38.778 1 67.52 ? O3P FAD 3004 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 53 #