data_5EQ6 # _model_server_result.job_id 2bWG5rKrYmhm-5z0LGqkTQ _model_server_result.datetime_utc '2024-11-05 00:28:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eq6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 5EQ6 # _exptl.entry_id 5EQ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EQ6 _cell.length_a 112.6 _cell.length_b 151.767 _cell.length_c 45.886 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EQ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E O1G ANP . B ANP 401 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? metalc ? metalc2 E O1B ANP . B ANP 401 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc3 F MG MG . B MG 402 1_555 H O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 5EQ6 _atom_sites.fract_transf_matrix[1][1] 0.008881 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006589 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021793 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 401 1 ANP ANP . D 3 MG A 1 402 1 MG MG . E 2 ANP B 1 401 2 ANP ANP . F 3 MG B 1 402 2 MG MG . G 4 HOH A 1 501 4 HOH HOH . G 4 HOH A 2 502 47 HOH HOH . G 4 HOH A 3 503 49 HOH HOH . G 4 HOH A 4 504 51 HOH HOH . G 4 HOH A 5 505 19 HOH HOH . G 4 HOH A 6 506 48 HOH HOH . G 4 HOH A 7 507 5 HOH HOH . G 4 HOH A 8 508 22 HOH HOH . G 4 HOH A 9 509 11 HOH HOH . G 4 HOH A 10 510 3 HOH HOH . G 4 HOH A 11 511 45 HOH HOH . G 4 HOH A 12 512 61 HOH HOH . G 4 HOH A 13 513 46 HOH HOH . G 4 HOH A 14 514 40 HOH HOH . G 4 HOH A 15 515 53 HOH HOH . G 4 HOH A 16 516 50 HOH HOH . H 4 HOH B 1 501 17 HOH HOH . H 4 HOH B 2 502 36 HOH HOH . H 4 HOH B 3 503 59 HOH HOH . H 4 HOH B 4 504 16 HOH HOH . H 4 HOH B 5 505 58 HOH HOH . H 4 HOH B 6 506 6 HOH HOH . H 4 HOH B 7 507 44 HOH HOH . H 4 HOH B 8 508 57 HOH HOH . H 4 HOH B 9 509 38 HOH HOH . H 4 HOH B 10 510 20 HOH HOH . H 4 HOH B 11 511 56 HOH HOH . H 4 HOH B 12 512 27 HOH HOH . H 4 HOH B 13 513 18 HOH HOH . H 4 HOH B 14 514 37 HOH HOH . H 4 HOH B 15 515 29 HOH HOH . H 4 HOH B 16 516 31 HOH HOH . H 4 HOH B 17 517 28 HOH HOH . H 4 HOH B 18 518 25 HOH HOH . H 4 HOH B 19 519 30 HOH HOH . H 4 HOH B 20 520 60 HOH HOH . H 4 HOH B 21 521 21 HOH HOH . H 4 HOH B 22 522 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . E 2 -30.489 51.019 -8.677 1 18.56 ? PG ANP 401 B 1 HETATM 2 O O1G ANP . . . E 2 -30.818 49.949 -9.662 1 18.56 ? O1G ANP 401 B 1 HETATM 3 O O2G ANP . . . E 2 -29.036 51.332 -8.56 1 18.56 ? O2G ANP 401 B 1 HETATM 4 O O3G ANP . . . E 2 -31.271 52.283 -8.8 1 18.56 ? O3G ANP 401 B 1 HETATM 5 P PB ANP . . . E 2 -31.843 48.893 -6.932 1 18.56 ? PB ANP 401 B 1 HETATM 6 O O1B ANP . . . E 2 -32.005 48.206 -8.241 1 18.56 ? O1B ANP 401 B 1 HETATM 7 O O2B ANP . . . E 2 -31.229 48.126 -5.813 1 18.56 ? O2B ANP 401 B 1 HETATM 8 N N3B ANP . . . E 2 -30.953 50.368 -7.14 1 18.56 ? N3B ANP 401 B 1 HETATM 9 P PA ANP . . . E 2 -34.257 48.122 -5.916 1 18.56 ? PA ANP 401 B 1 HETATM 10 O O1A ANP . . . E 2 -34.606 47.304 -7.104 1 18.56 ? O1A ANP 401 B 1 HETATM 11 O O2A ANP . . . E 2 -33.728 47.483 -4.682 1 18.56 ? O2A ANP 401 B 1 HETATM 12 O O3A ANP . . . E 2 -33.276 49.267 -6.389 1 18.56 ? O3A ANP 401 B 1 HETATM 13 O O5' ANP . . . E 2 -35.531 48.989 -5.549 1 18.56 ? O5' ANP 401 B 1 HETATM 14 C C5' ANP . . . E 2 -35.478 49.811 -4.398 1 18.56 ? C5' ANP 401 B 1 HETATM 15 C C4' ANP . . . E 2 -36.559 50.87 -4.451 1 18.56 ? C4' ANP 401 B 1 HETATM 16 O O4' ANP . . . E 2 -37.818 50.246 -4.315 1 18.56 ? O4' ANP 401 B 1 HETATM 17 C C3' ANP . . . E 2 -36.447 51.8 -3.281 1 18.56 ? C3' ANP 401 B 1 HETATM 18 O O3' ANP . . . E 2 -36.342 53.123 -3.765 1 18.56 ? O3' ANP 401 B 1 HETATM 19 C C2' ANP . . . E 2 -37.758 51.77 -2.573 1 18.56 ? C2' ANP 401 B 1 HETATM 20 O O2' ANP . . . E 2 -38.181 53.12 -2.511 1 18.56 ? O2' ANP 401 B 1 HETATM 21 C C1' ANP . . . E 2 -38.664 51.055 -3.522 1 18.56 ? C1' ANP 401 B 1 HETATM 22 N N9 ANP . . . E 2 -39.635 50.198 -2.825 1 18.56 ? N9 ANP 401 B 1 HETATM 23 C C8 ANP . . . E 2 -39.326 49.128 -2.1 1 18.56 ? C8 ANP 401 B 1 HETATM 24 N N7 ANP . . . E 2 -40.436 48.558 -1.594 1 18.56 ? N7 ANP 401 B 1 HETATM 25 C C5 ANP . . . E 2 -41.481 49.288 -1.986 1 18.56 ? C5 ANP 401 B 1 HETATM 26 C C6 ANP . . . E 2 -42.936 49.243 -1.79 1 18.56 ? C6 ANP 401 B 1 HETATM 27 N N6 ANP . . . E 2 -43.521 48.275 -1.051 1 18.56 ? N6 ANP 401 B 1 HETATM 28 N N1 ANP . . . E 2 -43.664 50.201 -2.368 1 18.56 ? N1 ANP 401 B 1 HETATM 29 C C2 ANP . . . E 2 -43.104 51.164 -3.103 1 18.56 ? C2 ANP 401 B 1 HETATM 30 N N3 ANP . . . E 2 -41.794 51.262 -3.315 1 18.56 ? N3 ANP 401 B 1 HETATM 31 C C4 ANP . . . E 2 -40.944 50.369 -2.795 1 18.56 ? C4 ANP 401 B 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #