data_5EQB # _model_server_result.job_id OfBHkU-lIKSy4m7vOSB-cQ _model_server_result.datetime_utc '2024-11-21 14:30:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eqb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5EQB # _exptl.entry_id 5EQB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.75 _cell.angle_gamma 90 _cell.entry_id 5EQB _cell.length_a 79.63 _cell.length_b 67.845 _cell.length_c 80.705 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EQB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 470 A CYS 470 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N39 1YN . A 1YN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 222 n n CHA C4D HEM doub 223 n n CHA HHA HEM sing 224 n n CHB C4A HEM sing 225 n n CHB C1B HEM doub 226 n n CHB HHB HEM sing 227 n n CHC C4B HEM sing 228 n n CHC C1C HEM doub 229 n n CHC HHC HEM sing 230 n n CHD C4C HEM doub 231 n n CHD C1D HEM sing 232 n n CHD HHD HEM sing 233 n n C1A C2A HEM doub 234 n y C1A NA HEM sing 235 n y C2A C3A HEM sing 236 n y C2A CAA HEM sing 237 n n C3A C4A HEM doub 238 n y C3A CMA HEM sing 239 n n C4A NA HEM sing 240 n y CMA HMA HEM sing 241 n n CMA HMAA HEM sing 242 n n CMA HMAB HEM sing 243 n n CAA CBA HEM sing 244 n n CAA HAA HEM sing 245 n n CAA HAAA HEM sing 246 n n CBA CGA HEM sing 247 n n CBA HBA HEM sing 248 n n CBA HBAA HEM sing 249 n n CGA O1A HEM doub 250 n n CGA O2A HEM sing 251 n n C1B C2B HEM sing 252 n n C1B NB HEM sing 253 n n C2B C3B HEM doub 254 n n C2B CMB HEM sing 255 n n C3B C4B HEM sing 256 n n C3B CAB HEM sing 257 n n C4B NB HEM doub 258 n n CMB HMB HEM sing 259 n n CMB HMBA HEM sing 260 n n CMB HMBB HEM sing 261 n n CAB CBB HEM doub 262 n n CAB HAB HEM sing 263 n n CBB HBB HEM sing 264 n n CBB HBBA HEM sing 265 n n C1C C2C HEM sing 266 n y C1C NC HEM sing 267 n y C2C C3C HEM doub 268 n y C2C CMC HEM sing 269 n n C3C C4C HEM sing 270 n y C3C CAC HEM sing 271 n n C4C NC HEM sing 272 n y CMC HMC HEM sing 273 n n CMC HMCA HEM sing 274 n n CMC HMCB HEM sing 275 n n CAC CBC HEM doub 276 n n CAC HAC HEM sing 277 n n CBC HBC HEM sing 278 n n CBC HBCA HEM sing 279 n n C1D C2D HEM sing 280 n n C1D ND HEM doub 281 n n C2D C3D HEM doub 282 n n C2D CMD HEM sing 283 n n C3D C4D HEM sing 284 n n C3D CAD HEM sing 285 n n C4D ND HEM sing 286 n n CMD HMD HEM sing 287 n n CMD HMDA HEM sing 288 n n CMD HMDB HEM sing 289 n n CAD CBD HEM sing 290 n n CAD HAD HEM sing 291 n n CAD HADA HEM sing 292 n n CBD CGD HEM sing 293 n n CBD HBD HEM sing 294 n n CBD HBDA HEM sing 295 n n CGD O1D HEM doub 296 n n CGD O2D HEM sing 297 n n O2A H2A HEM sing 298 n n O2D H2D HEM sing 299 n n FE NA HEM sing 300 n n FE NB HEM sing 301 n n FE NC HEM sing 302 n n FE ND HEM sing 303 n n # _atom_sites.entry_id 5EQB _atom_sites.fract_transf_matrix[1][1] 0.012558 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002158 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014739 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012572 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 601 HEM HEM . C 3 1YN A 1 602 602 1YN 1YN . D 4 HOH A 1 701 762 HOH HOH . D 4 HOH A 2 702 713 HOH HOH . D 4 HOH A 3 703 795 HOH HOH . D 4 HOH A 4 704 806 HOH HOH . D 4 HOH A 5 705 764 HOH HOH . D 4 HOH A 6 706 800 HOH HOH . D 4 HOH A 7 707 722 HOH HOH . D 4 HOH A 8 708 769 HOH HOH . D 4 HOH A 9 709 765 HOH HOH . D 4 HOH A 10 710 744 HOH HOH . D 4 HOH A 11 711 779 HOH HOH . D 4 HOH A 12 712 721 HOH HOH . D 4 HOH A 13 713 743 HOH HOH . D 4 HOH A 14 714 798 HOH HOH . D 4 HOH A 15 715 791 HOH HOH . D 4 HOH A 16 716 757 HOH HOH . D 4 HOH A 17 717 794 HOH HOH . D 4 HOH A 18 718 753 HOH HOH . D 4 HOH A 19 719 793 HOH HOH . D 4 HOH A 20 720 805 HOH HOH . D 4 HOH A 21 721 719 HOH HOH . D 4 HOH A 22 722 730 HOH HOH . D 4 HOH A 23 723 768 HOH HOH . D 4 HOH A 24 724 702 HOH HOH . D 4 HOH A 25 725 782 HOH HOH . D 4 HOH A 26 726 754 HOH HOH . D 4 HOH A 27 727 808 HOH HOH . D 4 HOH A 28 728 725 HOH HOH . D 4 HOH A 29 729 704 HOH HOH . D 4 HOH A 30 730 717 HOH HOH . D 4 HOH A 31 731 816 HOH HOH . D 4 HOH A 32 732 726 HOH HOH . D 4 HOH A 33 733 715 HOH HOH . D 4 HOH A 34 734 706 HOH HOH . D 4 HOH A 35 735 751 HOH HOH . D 4 HOH A 36 736 773 HOH HOH . D 4 HOH A 37 737 749 HOH HOH . D 4 HOH A 38 738 701 HOH HOH . D 4 HOH A 39 739 737 HOH HOH . D 4 HOH A 40 740 796 HOH HOH . D 4 HOH A 41 741 714 HOH HOH . D 4 HOH A 42 742 727 HOH HOH . D 4 HOH A 43 743 708 HOH HOH . D 4 HOH A 44 744 824 HOH HOH . D 4 HOH A 45 745 763 HOH HOH . D 4 HOH A 46 746 777 HOH HOH . D 4 HOH A 47 747 783 HOH HOH . D 4 HOH A 48 748 741 HOH HOH . D 4 HOH A 49 749 787 HOH HOH . D 4 HOH A 50 750 807 HOH HOH . D 4 HOH A 51 751 755 HOH HOH . D 4 HOH A 52 752 738 HOH HOH . D 4 HOH A 53 753 740 HOH HOH . D 4 HOH A 54 754 814 HOH HOH . D 4 HOH A 55 755 742 HOH HOH . D 4 HOH A 56 756 766 HOH HOH . D 4 HOH A 57 757 792 HOH HOH . D 4 HOH A 58 758 804 HOH HOH . D 4 HOH A 59 759 747 HOH HOH . D 4 HOH A 60 760 815 HOH HOH . D 4 HOH A 61 761 724 HOH HOH . D 4 HOH A 62 762 703 HOH HOH . D 4 HOH A 63 763 745 HOH HOH . D 4 HOH A 64 764 823 HOH HOH . D 4 HOH A 65 765 790 HOH HOH . D 4 HOH A 66 766 819 HOH HOH . D 4 HOH A 67 767 705 HOH HOH . D 4 HOH A 68 768 709 HOH HOH . D 4 HOH A 69 769 797 HOH HOH . D 4 HOH A 70 770 710 HOH HOH . D 4 HOH A 71 771 707 HOH HOH . D 4 HOH A 72 772 746 HOH HOH . D 4 HOH A 73 773 789 HOH HOH . D 4 HOH A 74 774 810 HOH HOH . D 4 HOH A 75 775 771 HOH HOH . D 4 HOH A 76 776 712 HOH HOH . D 4 HOH A 77 777 802 HOH HOH . D 4 HOH A 78 778 760 HOH HOH . D 4 HOH A 79 779 756 HOH HOH . D 4 HOH A 80 780 811 HOH HOH . D 4 HOH A 81 781 716 HOH HOH . D 4 HOH A 82 782 750 HOH HOH . D 4 HOH A 83 783 732 HOH HOH . D 4 HOH A 84 784 772 HOH HOH . D 4 HOH A 85 785 731 HOH HOH . D 4 HOH A 86 786 758 HOH HOH . D 4 HOH A 87 787 822 HOH HOH . D 4 HOH A 88 788 735 HOH HOH . D 4 HOH A 89 789 761 HOH HOH . D 4 HOH A 90 790 781 HOH HOH . D 4 HOH A 91 791 720 HOH HOH . D 4 HOH A 92 792 739 HOH HOH . D 4 HOH A 93 793 820 HOH HOH . D 4 HOH A 94 794 780 HOH HOH . D 4 HOH A 95 795 803 HOH HOH . D 4 HOH A 96 796 759 HOH HOH . D 4 HOH A 97 797 776 HOH HOH . D 4 HOH A 98 798 734 HOH HOH . D 4 HOH A 99 799 723 HOH HOH . D 4 HOH A 100 800 786 HOH HOH . D 4 HOH A 101 801 752 HOH HOH . D 4 HOH A 102 802 778 HOH HOH . D 4 HOH A 103 803 801 HOH HOH . D 4 HOH A 104 804 729 HOH HOH . D 4 HOH A 105 805 799 HOH HOH . D 4 HOH A 106 806 728 HOH HOH . D 4 HOH A 107 807 813 HOH HOH . D 4 HOH A 108 808 817 HOH HOH . D 4 HOH A 109 809 718 HOH HOH . D 4 HOH A 110 810 784 HOH HOH . D 4 HOH A 111 811 809 HOH HOH . D 4 HOH A 112 812 785 HOH HOH . D 4 HOH A 113 813 733 HOH HOH . D 4 HOH A 114 814 711 HOH HOH . D 4 HOH A 115 815 821 HOH HOH . D 4 HOH A 116 816 788 HOH HOH . D 4 HOH A 117 817 748 HOH HOH . D 4 HOH A 118 818 736 HOH HOH . D 4 HOH A 119 819 818 HOH HOH . D 4 HOH A 120 820 774 HOH HOH . D 4 HOH A 121 821 812 HOH HOH . D 4 HOH A 122 822 775 HOH HOH . D 4 HOH A 123 823 770 HOH HOH . D 4 HOH A 124 824 767 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 27.747 8.521 18.319 1 33.27 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 26.778 11.645 21.894 1 26.29 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 29.488 14.913 19.646 1 30.83 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 29.929 12.073 15.843 1 30.58 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 27.295 9.089 19.487 1 34.95 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 26.555 8.397 20.462 1 31.22 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 26.278 9.265 21.465 1 33.3 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 26.847 10.504 21.124 1 33.4 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 25.512 8.956 22.723 1 29.67 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 26.14 6.951 20.401 1 30.68 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 24.895 6.855 19.515 1 27.29 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 24.172 5.546 19.706 1 31.75 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 23.042 5.38 19.204 1 29.41 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 24.693 4.622 20.361 1 33.91 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 27.421 12.725 21.619 1 30.94 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 27.609 13.778 22.481 1 32.03 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 28.298 14.77 21.878 1 32.37 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 28.708 14.163 20.574 1 28.06 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 26.993 13.798 23.846 1 28.78 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 28.696 16.026 22.313 1 34.56 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 29.378 16.275 23.553 1 42.06 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 29.96 14.454 18.465 1 33.74 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 30.826 15.073 17.555 1 29.77 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 30.919 14.247 16.452 1 33.45 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 30.099 13.118 16.707 1 35.17 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 31.525 16.393 17.744 1 29.73 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 31.716 14.487 15.237 1 33.7 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 32.936 15.002 15.324 1 37.83 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 29.378 10.867 16.266 1 33 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 29.416 9.691 15.4 1 36.75 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 28.812 8.702 16.071 1 35.12 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 28.41 9.274 17.363 1 30.64 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 30.012 9.611 14.019 1 32.9 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 28.638 7.294 15.56 1 32.62 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 27.195 6.797 15.571 1 35.61 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 27.157 5.349 15.134 1 35.66 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 28.207 4.681 15.018 1 32.19 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 26.066 4.803 14.885 1 34.25 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 27.438 10.392 19.894 1 31.46 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 28.156 12.938 20.476 1 31.43 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 29.525 13.273 17.937 1 32.24 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 28.768 10.57 17.423 1 34.92 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 28.481 11.724 18.866 1 31.29 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #