data_5EQE # _model_server_result.job_id r0ju1qKXdbP5X5enx0HaMA _model_server_result.datetime_utc '2025-04-19 12:42:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eqe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 5EQE # _exptl.entry_id 5EQE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 233.353 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[4-[(4-methyl-1,4-diazepan-1-yl)methyl]phenyl]methanamine' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EQE _cell.length_a 55.671 _cell.length_b 120.878 _cell.length_c 131.208 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EQE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C14 H23 N3' _chem_comp.formula_weight 233.353 _chem_comp.id 5R8 _chem_comp.mon_nstd_flag . _chem_comp.name '[4-[(4-methyl-1,4-diazepan-1-yl)methyl]phenyl]methanamine' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N36 C35 5R8 sing 1 n n C35 C28 5R8 sing 2 n n C28 C27 5R8 doub 3 n y C28 C29 5R8 sing 4 n y C27 C26 5R8 sing 5 n y C29 C30 5R8 doub 6 n y C26 C23 5R8 doub 7 n y C30 C23 5R8 sing 8 n y C23 C22 5R8 sing 9 n n C7 C6 5R8 sing 10 n n C7 N8 5R8 sing 11 n n C6 N2 5R8 sing 12 n n C1 N2 5R8 sing 13 n n C22 N8 5R8 sing 14 n n N8 C9 5R8 sing 15 n n N2 C11 5R8 sing 16 n n C9 C10 5R8 sing 17 n n C11 C10 5R8 sing 18 n n C6 H1 5R8 sing 19 n n C6 H2 5R8 sing 20 n n C1 H3 5R8 sing 21 n n C1 H4 5R8 sing 22 n n C1 H5 5R8 sing 23 n n C7 H7 5R8 sing 24 n n C7 H8 5R8 sing 25 n n C9 H10 5R8 sing 26 n n C9 H11 5R8 sing 27 n n C10 H12 5R8 sing 28 n n C10 H13 5R8 sing 29 n n C11 H14 5R8 sing 30 n n C11 H15 5R8 sing 31 n n C22 H16 5R8 sing 32 n n C22 H17 5R8 sing 33 n n C26 H18 5R8 sing 34 n n C27 H19 5R8 sing 35 n n C29 H20 5R8 sing 36 n n C30 H21 5R8 sing 37 n n C35 H22 5R8 sing 38 n n C35 H23 5R8 sing 39 n n N36 H24 5R8 sing 40 n n N36 H25 5R8 sing 41 n n # _atom_sites.entry_id 5EQE _atom_sites.fract_transf_matrix[1][1] 0.017963 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008273 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007621 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5R8 A 1 501 1 5R8 AP2 . D 2 5R8 B 1 501 1 5R8 AP2 . E 3 HOH A 1 601 12 HOH WAT . E 3 HOH A 2 602 21 HOH WAT . E 3 HOH A 3 603 49 HOH WAT . E 3 HOH A 4 604 23 HOH WAT . E 3 HOH A 5 605 4 HOH WAT . E 3 HOH A 6 606 37 HOH WAT . E 3 HOH A 7 607 1 HOH WAT . E 3 HOH A 8 608 52 HOH WAT . E 3 HOH A 9 609 107 HOH WAT . E 3 HOH A 10 610 53 HOH WAT . E 3 HOH A 11 611 11 HOH WAT . E 3 HOH A 12 612 41 HOH WAT . E 3 HOH A 13 613 43 HOH WAT . E 3 HOH A 14 614 58 HOH WAT . E 3 HOH A 15 615 36 HOH WAT . E 3 HOH A 16 616 10 HOH WAT . E 3 HOH A 17 617 103 HOH WAT . E 3 HOH A 18 618 89 HOH WAT . E 3 HOH A 19 619 27 HOH WAT . E 3 HOH A 20 620 115 HOH WAT . E 3 HOH A 21 621 47 HOH WAT . E 3 HOH A 22 622 32 HOH WAT . E 3 HOH A 23 623 63 HOH WAT . E 3 HOH A 24 624 86 HOH WAT . E 3 HOH A 25 625 66 HOH WAT . E 3 HOH A 26 626 102 HOH WAT . E 3 HOH A 27 627 54 HOH WAT . E 3 HOH A 28 628 45 HOH WAT . E 3 HOH A 29 629 13 HOH WAT . E 3 HOH A 30 630 9 HOH WAT . E 3 HOH A 31 631 113 HOH WAT . E 3 HOH A 32 632 57 HOH WAT . E 3 HOH A 33 633 17 HOH WAT . E 3 HOH A 34 634 82 HOH WAT . E 3 HOH A 35 635 39 HOH WAT . E 3 HOH A 36 636 56 HOH WAT . E 3 HOH A 37 637 24 HOH WAT . E 3 HOH A 38 638 61 HOH WAT . E 3 HOH A 39 639 88 HOH WAT . E 3 HOH A 40 640 116 HOH WAT . E 3 HOH A 41 641 69 HOH WAT . E 3 HOH A 42 642 7 HOH WAT . E 3 HOH A 43 643 105 HOH WAT . E 3 HOH A 44 644 98 HOH WAT . E 3 HOH A 45 645 30 HOH WAT . E 3 HOH A 46 646 111 HOH WAT . E 3 HOH A 47 647 79 HOH WAT . E 3 HOH A 48 648 119 HOH WAT . E 3 HOH A 49 649 97 HOH WAT . E 3 HOH A 50 650 80 HOH WAT . E 3 HOH A 51 651 22 HOH WAT . E 3 HOH A 52 652 114 HOH WAT . E 3 HOH A 53 653 85 HOH WAT . E 3 HOH A 54 654 106 HOH WAT . E 3 HOH A 55 655 112 HOH WAT . E 3 HOH A 56 656 108 HOH WAT . E 3 HOH A 57 657 92 HOH WAT . E 3 HOH A 58 658 75 HOH WAT . E 3 HOH A 59 659 29 HOH WAT . E 3 HOH A 60 660 60 HOH WAT . E 3 HOH A 61 661 83 HOH WAT . E 3 HOH A 62 662 6 HOH WAT . F 3 HOH B 1 601 2 HOH WAT . F 3 HOH B 2 602 16 HOH WAT . F 3 HOH B 3 603 33 HOH WAT . F 3 HOH B 4 604 84 HOH WAT . F 3 HOH B 5 605 62 HOH WAT . F 3 HOH B 6 606 18 HOH WAT . F 3 HOH B 7 607 19 HOH WAT . F 3 HOH B 8 608 95 HOH WAT . F 3 HOH B 9 609 44 HOH WAT . F 3 HOH B 10 610 68 HOH WAT . F 3 HOH B 11 611 14 HOH WAT . F 3 HOH B 12 612 70 HOH WAT . F 3 HOH B 13 613 38 HOH WAT . F 3 HOH B 14 614 8 HOH WAT . F 3 HOH B 15 615 64 HOH WAT . F 3 HOH B 16 616 110 HOH WAT . F 3 HOH B 17 617 15 HOH WAT . F 3 HOH B 18 618 3 HOH WAT . F 3 HOH B 19 619 46 HOH WAT . F 3 HOH B 20 620 48 HOH WAT . F 3 HOH B 21 621 50 HOH WAT . F 3 HOH B 22 622 104 HOH WAT . F 3 HOH B 23 623 91 HOH WAT . F 3 HOH B 24 624 51 HOH WAT . F 3 HOH B 25 625 71 HOH WAT . F 3 HOH B 26 626 5 HOH WAT . F 3 HOH B 27 627 101 HOH WAT . F 3 HOH B 28 628 74 HOH WAT . F 3 HOH B 29 629 94 HOH WAT . F 3 HOH B 30 630 35 HOH WAT . F 3 HOH B 31 631 40 HOH WAT . F 3 HOH B 32 632 87 HOH WAT . F 3 HOH B 33 633 72 HOH WAT . F 3 HOH B 34 634 65 HOH WAT . F 3 HOH B 35 635 42 HOH WAT . F 3 HOH B 36 636 100 HOH WAT . F 3 HOH B 37 637 59 HOH WAT . F 3 HOH B 38 638 73 HOH WAT . F 3 HOH B 39 639 77 HOH WAT . F 3 HOH B 40 640 34 HOH WAT . F 3 HOH B 41 641 28 HOH WAT . F 3 HOH B 42 642 76 HOH WAT . F 3 HOH B 43 643 26 HOH WAT . F 3 HOH B 44 644 81 HOH WAT . F 3 HOH B 45 645 25 HOH WAT . F 3 HOH B 46 646 67 HOH WAT . F 3 HOH B 47 647 99 HOH WAT . F 3 HOH B 48 648 20 HOH WAT . F 3 HOH B 49 649 117 HOH WAT . F 3 HOH B 50 650 55 HOH WAT . F 3 HOH B 51 651 96 HOH WAT . F 3 HOH B 52 652 90 HOH WAT . F 3 HOH B 53 653 78 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 5R8 . . . D 2 34.505 35.361 38.141 1 47.52 ? C6 5R8 501 B 1 HETATM 2 C C1 5R8 . . . D 2 34.641 37.565 36.934 1 46.12 ? C1 5R8 501 B 1 HETATM 3 N N2 5R8 . . . D 2 34.065 36.225 37.035 1 45.56 ? N2 5R8 501 B 1 HETATM 4 C C7 5R8 . . . D 2 35.815 34.557 37.94 1 48.7 ? C7 5R8 501 B 1 HETATM 5 N N8 5R8 . . . D 2 36.363 34.444 36.556 1 48.42 ? N8 5R8 501 B 1 HETATM 6 C C9 5R8 . . . D 2 35.439 33.884 35.549 1 48.17 ? C9 5R8 501 B 1 HETATM 7 C C10 5R8 . . . D 2 34.601 34.977 34.884 1 47.42 ? C10 5R8 501 B 1 HETATM 8 C C11 5R8 . . . D 2 33.547 35.582 35.817 1 45.78 ? C11 5R8 501 B 1 HETATM 9 C C22 5R8 . . . D 2 37.786 33.96 36.416 1 50.7 ? C22 5R8 501 B 1 HETATM 10 C C23 5R8 . . . D 2 38.663 33.77 37.659 1 51.45 ? C23 5R8 501 B 1 HETATM 11 C C26 5R8 . . . D 2 39.588 34.774 38.054 1 53.6 ? C26 5R8 501 B 1 HETATM 12 C C27 5R8 . . . D 2 40.408 34.593 39.203 1 54.18 ? C27 5R8 501 B 1 HETATM 13 C C28 5R8 . . . D 2 40.316 33.402 39.977 1 54.28 ? C28 5R8 501 B 1 HETATM 14 C C29 5R8 . . . D 2 39.395 32.402 39.58 1 52.52 ? C29 5R8 501 B 1 HETATM 15 C C30 5R8 . . . D 2 38.58 32.584 38.437 1 52.16 ? C30 5R8 501 B 1 HETATM 16 C C35 5R8 . . . D 2 41.185 33.193 41.201 1 56.74 ? C35 5R8 501 B 1 HETATM 17 N N36 5R8 . . . D 2 41.274 34.383 42.048 1 58.57 ? N36 5R8 501 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 17 #