data_5EQI # _model_server_result.job_id ECwoxbLhlJeE92ARltDoOQ _model_server_result.datetime_utc '2024-12-26 10:28:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eqi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5EQI # _exptl.entry_id 5EQI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 479.608 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Cytochalasin B' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.16 _cell.angle_gamma 90 _cell.entry_id 5EQI _cell.length_a 122.43 _cell.length_b 102.31 _cell.length_c 68.073 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EQI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H37 N O5' _chem_comp.formula_weight 479.608 _chem_comp.id 5RH _chem_comp.mon_nstd_flag . _chem_comp.name 'Cytochalasin B' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 C24 5RH sing 1 n n C24 C26 5RH sing 2 n n C24 C23 5RH sing 3 n n C26 C27 5RH sing 4 n n O5 C30 5RH sing 5 n n C23 C22 5RH sing 6 n n C27 C28 5RH doub 7 e n C28 C29 5RH sing 8 n n C30 C29 5RH sing 9 n n C30 C2 5RH sing 10 n n C29 C16 5RH sing 11 n n C22 C21 5RH sing 12 n n C1 C2 5RH doub 13 n n C2 C3 5RH sing 14 n n C21 C20 5RH sing 15 n n O4 C20 5RH sing 16 n n O1 C15 5RH doub 17 n n C16 O2 5RH sing 18 n n C16 C15 5RH sing 19 n n C16 C5 5RH sing 20 n n O2 C17 5RH sing 21 n n C3 C5 5RH sing 22 n n C3 C4 5RH sing 23 n n C19 C20 5RH sing 24 n n C19 C18 5RH doub 25 e n C15 N 5RH sing 26 n n C5 C7 5RH sing 27 n n N C7 5RH sing 28 n n C17 C18 5RH sing 29 n n C17 O3 5RH doub 30 n n C7 C8 5RH sing 31 n n C8 C9 5RH sing 32 n n C14 C9 5RH doub 33 n y C14 C13 5RH sing 34 n y C9 C10 5RH sing 35 n y C13 C12 5RH doub 36 n y C10 C11 5RH doub 37 n y C12 C11 5RH sing 38 n y C4 H11 5RH sing 39 n n C4 H9 5RH sing 40 n n C4 H10 5RH sing 41 n n C14 H21 5RH sing 42 n n C5 H12 5RH sing 43 n n C11 H18 5RH sing 44 n n C7 H2 5RH sing 45 n n C8 H16 5RH sing 46 n n C8 H15 5RH sing 47 n n C10 H17 5RH sing 48 n n C12 H19 5RH sing 49 n n C13 H20 5RH sing 50 n n C3 H1 5RH sing 51 n n C18 H23 5RH sing 52 n n C19 H24 5RH sing 53 n n C20 H3 5RH sing 54 n n O4 H25 5RH sing 55 n n C21 H26 5RH sing 56 n n C21 H27 5RH sing 57 n n C22 H29 5RH sing 58 n n C22 H28 5RH sing 59 n n N H22 5RH sing 60 n n C1 H8 5RH sing 61 n n C1 H7 5RH sing 62 n n C30 H6 5RH sing 63 n n O5 H39 5RH sing 64 n n C29 H5 5RH sing 65 n n C28 H38 5RH sing 66 n n C27 H37 5RH sing 67 n n C26 H36 5RH sing 68 n n C26 H35 5RH sing 69 n n C24 H4 5RH sing 70 n n C25 H32 5RH sing 71 n n C25 H34 5RH sing 72 n n C25 H33 5RH sing 73 n n C23 H31 5RH sing 74 n n C23 H30 5RH sing 75 n n # _atom_sites.entry_id 5EQI _atom_sites.fract_transf_matrix[1][1] 0.008168 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001464 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009774 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014924 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 5RH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 5RH _pdbx_nonpoly_scheme.auth_mon_id 5RH _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 5RH . . . B 2 -38.509 6.634 13.612 1 96.06 ? C4 5RH 501 A 1 HETATM 2 C C14 5RH . . . B 2 -38.324 11.691 15.751 1 111.42 ? C14 5RH 501 A 1 HETATM 3 C C5 5RH . . . B 2 -38.755 9.058 13.097 1 106.13 ? C5 5RH 501 A 1 HETATM 4 C C11 5RH . . . B 2 -40.153 10.478 17.439 1 114.14 ? C11 5RH 501 A 1 HETATM 5 C C7 5RH . . . B 2 -37.374 9.489 13.62 1 101.51 ? C7 5RH 501 A 1 HETATM 6 C C8 5RH . . . B 2 -37.306 9.426 15.148 1 117.47 ? C8 5RH 501 A 1 HETATM 7 C C9 5RH . . . B 2 -38.304 10.303 15.892 1 100.9 ? C9 5RH 501 A 1 HETATM 8 C C10 5RH . . . B 2 -39.227 9.707 16.746 1 108.77 ? C10 5RH 501 A 1 HETATM 9 C C12 5RH . . . B 2 -40.162 11.859 17.286 1 116.72 ? C12 5RH 501 A 1 HETATM 10 C C13 5RH . . . B 2 -39.246 12.465 16.443 1 113.82 ? C13 5RH 501 A 1 HETATM 11 C C3 5RH . . . B 2 -38.803 7.651 12.511 1 102.44 ? C3 5RH 501 A 1 HETATM 12 O O3 5RH . . . B 2 -41.119 10.143 14.503 1 130.56 ? O3 5RH 501 A 1 HETATM 13 C C17 5RH . . . B 2 -41.016 10.836 13.506 1 131.65 ? C17 5RH 501 A 1 HETATM 14 O O2 5RH . . . B 2 -40.516 10.442 12.321 1 120.87 ? O2 5RH 501 A 1 HETATM 15 C C18 5RH . . . B 2 -41.542 12.218 13.497 1 115.14 ? C18 5RH 501 A 1 HETATM 16 C C19 5RH . . . B 2 -41.481 12.966 12.4 1 103.26 ? C19 5RH 501 A 1 HETATM 17 C C20 5RH . . . B 2 -42.044 14.37 12.409 1 101.53 ? C20 5RH 501 A 1 HETATM 18 O O4 5RH . . . B 2 -43.361 14.329 11.847 1 108.36 ? O4 5RH 501 A 1 HETATM 19 C C21 5RH . . . B 2 -41.193 15.366 11.618 1 86.64 ? C21 5RH 501 A 1 HETATM 20 C C22 5RH . . . B 2 -40.489 14.798 10.387 1 98.2 ? C22 5RH 501 A 1 HETATM 21 C C15 5RH . . . B 2 -38.222 11.303 12.398 1 112.53 ? C15 5RH 501 A 1 HETATM 22 O O1 5RH . . . B 2 -38.377 12.46 12.043 1 116.77 ? O1 5RH 501 A 1 HETATM 23 C C2 5RH . . . B 2 -37.862 7.54 11.336 1 88.46 ? C2 5RH 501 A 1 HETATM 24 N N 5RH . . . B 2 -37.248 10.858 13.161 1 106.88 ? N 5RH 501 A 1 HETATM 25 C C16 5RH . . . B 2 -39.132 10.149 12.092 1 126.51 ? C16 5RH 501 A 1 HETATM 26 C C1 5RH . . . B 2 -37.124 6.458 11.105 1 84.07 ? C1 5RH 501 A 1 HETATM 27 C C30 5RH . . . B 2 -37.813 8.741 10.425 1 97.92 ? C30 5RH 501 A 1 HETATM 28 O O5 5RH . . . B 2 -37.847 8.304 9.057 1 105.83 ? O5 5RH 501 A 1 HETATM 29 C C29 5RH . . . B 2 -38.979 9.714 10.634 1 116.99 ? C29 5RH 501 A 1 HETATM 30 C C28 5RH . . . B 2 -38.781 10.944 9.767 1 98.51 ? C28 5RH 501 A 1 HETATM 31 C C27 5RH . . . B 2 -39.8 11.618 9.226 1 79.21 ? C27 5RH 501 A 1 HETATM 32 C C26 5RH . . . B 2 -39.493 12.832 8.375 1 85.86 ? C26 5RH 501 A 1 HETATM 33 C C24 5RH . . . B 2 -40.729 13.685 8.095 1 76.43 ? C24 5RH 501 A 1 HETATM 34 C C25 5RH . . . B 2 -40.363 14.877 7.214 1 86.77 ? C25 5RH 501 A 1 HETATM 35 C C23 5RH . . . B 2 -41.434 14.161 9.368 1 93.13 ? C23 5RH 501 A 1 HETATM 36 H H11 5RH . . . B 2 -38.626 5.654 13.228 1 115.28 ? H11 5RH 501 A 1 HETATM 37 H H9 5RH . . . B 2 -37.515 6.762 13.955 1 115.28 ? H9 5RH 501 A 1 HETATM 38 H H10 5RH . . . B 2 -39.181 6.78 14.417 1 115.28 ? H10 5RH 501 A 1 HETATM 39 H H21 5RH . . . B 2 -37.611 12.171 15.091 1 133.7 ? H21 5RH 501 A 1 HETATM 40 H H18 5RH . . . B 2 -40.868 10.002 18.099 1 136.97 ? H18 5RH 501 A 1 HETATM 41 H H2 5RH . . . B 2 -36.587 8.863 13.176 1 121.81 ? H2 5RH 501 A 1 HETATM 42 H H16 5RH . . . B 2 -37.459 8.39 15.458 1 140.96 ? H16 5RH 501 A 1 HETATM 43 H H15 5RH . . . B 2 -36.299 9.707 15.461 1 140.96 ? H15 5RH 501 A 1 HETATM 44 H H17 5RH . . . B 2 -39.227 8.631 16.868 1 130.52 ? H17 5RH 501 A 1 HETATM 45 H H19 5RH . . . B 2 -40.881 12.46 17.828 1 140.06 ? H19 5RH 501 A 1 HETATM 46 H H20 5RH . . . B 2 -39.25 13.541 16.321 1 136.58 ? H20 5RH 501 A 1 HETATM 47 H H1 5RH . . . B 2 -39.826 7.47 12.152 1 122.93 ? H1 5RH 501 A 1 HETATM 48 H H23 5RH . . . B 2 -41.98 12.624 14.393 1 138.16 ? H23 5RH 501 A 1 HETATM 49 H H24 5RH . . . B 2 -41.051 12.565 11.498 1 123.91 ? H24 5RH 501 A 1 HETATM 50 H H3 5RH . . . B 2 -42.102 14.719 13.449 1 121.84 ? H3 5RH 501 A 1 HETATM 51 H H25 5RH . . . B 2 -43.769 15.203 11.916 1 130.03 ? H25 5RH 501 A 1 HETATM 52 H H26 5RH . . . B 2 -41.832 16.192 11.301 1 103.96 ? H26 5RH 501 A 1 HETATM 53 H H27 5RH . . . B 2 -40.438 15.784 12.287 1 103.96 ? H27 5RH 501 A 1 HETATM 54 H H29 5RH . . . B 2 -39.933 15.6 9.898 1 117.85 ? H29 5RH 501 A 1 HETATM 55 H H28 5RH . . . B 2 -39.763 14.049 10.71 1 117.85 ? H28 5RH 501 A 1 HETATM 56 H H22 5RH . . . B 2 -36.492 11.446 13.48 1 128.26 ? H22 5RH 501 A 1 HETATM 57 H H8 5RH . . . B 2 -36.467 6.427 10.252 1 100.89 ? H8 5RH 501 A 1 HETATM 58 H H7 5RH . . . B 2 -37.18 5.615 11.773 1 100.89 ? H7 5RH 501 A 1 HETATM 59 H H6 5RH . . . B 2 -36.875 9.285 10.61 1 117.5 ? H6 5RH 501 A 1 HETATM 60 H H39 5RH . . . B 2 -37.075 7.75 8.876 1 127 ? H39 5RH 501 A 1 HETATM 61 H H5 5RH . . . B 2 -39.906 9.211 10.326 1 140.39 ? H5 5RH 501 A 1 HETATM 62 H H38 5RH . . . B 2 -37.778 11.287 9.58 1 118.21 ? H38 5RH 501 A 1 HETATM 63 H H37 5RH . . . B 2 -40.817 11.304 9.391 1 95.05 ? H37 5RH 501 A 1 HETATM 64 H H36 5RH . . . B 2 -39.063 12.504 7.427 1 103.03 ? H36 5RH 501 A 1 HETATM 65 H H35 5RH . . . B 2 -38.745 13.444 8.883 1 103.03 ? H35 5RH 501 A 1 HETATM 66 H H4 5RH . . . B 2 -41.441 13.064 7.534 1 91.72 ? H4 5RH 501 A 1 HETATM 67 H H32 5RH . . . B 2 -39.802 14.542 6.381 1 104.12 ? H32 5RH 501 A 1 HETATM 68 H H34 5RH . . . B 2 -41.248 15.351 6.876 1 104.12 ? H34 5RH 501 A 1 HETATM 69 H H33 5RH . . . B 2 -39.786 15.566 7.775 1 104.12 ? H33 5RH 501 A 1 HETATM 70 H H31 5RH . . . B 2 -42.204 14.886 9.097 1 111.76 ? H31 5RH 501 A 1 HETATM 71 H H30 5RH . . . B 2 -41.936 13.31 9.833 1 111.76 ? H30 5RH 501 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 71 #