data_5ER4
#
_model_server_result.job_id            3yE1YcZEBOxrfqqDY-UepQ 
_model_server_result.datetime_utc      '2024-11-29 04:57:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5er4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":103}' 
#
_entry.id    5ER4 
#
_exptl.entry_id    5ER4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              267.322 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-methyl-5,6,6~{a},7-tetrahydro-4~{H}-dibenzo[de,g]quinoline-10,11-diol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5ER4 
_cell.length_a            34.91 
_cell.length_b            89.24 
_cell.length_c            60.27 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ER4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O SER 19 X SER 18 1_555 B CA CA . X CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc2 A O GLU 22 X GLU 21 1_555 B CA CA . X CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc3 A O ASP 24 X ASP 23 1_555 B CA CA . X CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc4 A O LYS 27 X LYS 26 1_555 B CA CA . X CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc5 A OE1 GLU 32 X GLU 31 1_555 B CA CA . X CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc6 A OE2 GLU 32 X GLU 31 1_555 B CA CA . X CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc7 A OD1 ASP 62 X ASP 61 1_555 C CA CA . X CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc8 A OD1 ASP 64 X ASP 63 1_555 C CA CA . X CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc9 A OD1 ASP 66 X ASP 65 1_555 C CA CA . X CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc10 A O GLU 68 X GLU 67 1_555 C CA CA . X CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc11 A OE1 GLU 73 X GLU 72 1_555 C CA CA . X CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc12 A OE2 GLU 73 X GLU 72 1_555 C CA CA . X CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
metalc ? metalc13 B CA CA . X CA 101 1_555 F O HOH . X HOH 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? 
metalc ? metalc14 C CA CA . X CA 102 1_555 F O HOH . X HOH 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc15 E CA CA . X CA 104 1_555 F O HOH . X HOH 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
metalc ? metalc16 E CA CA . X CA 104 1_555 F O HOH . X HOH 248 3_754 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? 
metalc ? metalc17 E CA CA . X CA 104 1_555 F O HOH . X HOH 262 8_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? 
metalc ? metalc18 E CA CA . X CA 104 1_555 F O HOH . X HOH 266 8_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc19 E CA CA . X CA 104 1_555 F O HOH . X HOH 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
metalc ? metalc20 E CA CA . X CA 104 1_555 F O HOH . X HOH 272 3_754 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
#
_chem_comp.formula           'C17 H17 N O2' 
_chem_comp.formula_weight    267.322 
_chem_comp.id                5RL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-methyl-5,6,6~{a},7-tetrahydro-4~{H}-dibenzo[de,g]quinoline-10,11-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Apomorphine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C13 N03 5RL sing 1 n n 
C06 C04 5RL sing 2 n n 
C06 C11 5RL sing 3 n n 
N03 C04 5RL sing 4 n n 
N03 C08 5RL sing 5 n n 
C04 C05 5RL sing 6 n n 
C08 C09 5RL sing 7 n n 
C09 C07 5RL sing 8 n n 
C16 C11 5RL sing 9 n y 
C16 C20 5RL doub 10 n y 
C11 C12 5RL doub 11 n y 
C05 C07 5RL doub 12 n y 
C05 C10 5RL sing 13 n y 
C07 C14 5RL sing 14 n y 
C20 C19 5RL sing 15 n y 
C12 C10 5RL sing 16 n n 
C12 C17 5RL sing 17 n y 
C10 C15 5RL doub 18 n y 
C14 C18 5RL doub 19 n y 
C19 C17 5RL doub 20 n y 
C19 O02 5RL sing 21 n n 
C17 O01 5RL sing 22 n n 
C15 C18 5RL sing 23 n y 
C13 H1 5RL sing 24 n n 
C13 H2 5RL sing 25 n n 
C13 H3 5RL sing 26 n n 
C14 H4 5RL sing 27 n n 
C15 H5 5RL sing 28 n n 
C16 H6 5RL sing 29 n n 
C20 H7 5RL sing 30 n n 
O01 H8 5RL sing 31 n n 
O02 H9 5RL sing 32 n n 
C08 H11 5RL sing 33 n n 
C08 H12 5RL sing 34 n n 
C09 H13 5RL sing 35 n n 
C09 H14 5RL sing 36 n n 
C18 H15 5RL sing 37 n n 
C06 H10 5RL sing 38 n n 
C06 H16 5RL sing 39 n n 
C04 H17 5RL sing 40 n n 
#
_atom_sites.entry_id                     5ER4 
_atom_sites.fract_transf_matrix[1][1]    0.028645 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011206 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016592 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA X 1 101 1 CA CA . 
C 2 CA X 1 102 1 CA CA . 
D 3 5RL X 1 103 1 5RL INH . 
E 2 CA X 1 104 1 CA CA . 
F 4 HOH X 1 201 106 HOH HOH . 
F 4 HOH X 2 202 136 HOH HOH . 
F 4 HOH X 3 203 114 HOH HOH . 
F 4 HOH X 4 204 80 HOH HOH . 
F 4 HOH X 5 205 122 HOH HOH . 
F 4 HOH X 6 206 75 HOH HOH . 
F 4 HOH X 7 207 86 HOH HOH . 
F 4 HOH X 8 208 77 HOH HOH . 
F 4 HOH X 9 209 81 HOH HOH . 
F 4 HOH X 10 210 128 HOH HOH . 
F 4 HOH X 11 211 92 HOH HOH . 
F 4 HOH X 12 212 83 HOH HOH . 
F 4 HOH X 13 213 126 HOH HOH . 
F 4 HOH X 14 214 85 HOH HOH . 
F 4 HOH X 15 215 26 HOH HOH . 
F 4 HOH X 16 216 112 HOH HOH . 
F 4 HOH X 17 217 5 HOH HOH . 
F 4 HOH X 18 218 13 HOH HOH . 
F 4 HOH X 19 219 72 HOH HOH . 
F 4 HOH X 20 220 2 HOH HOH . 
F 4 HOH X 21 221 48 HOH HOH . 
F 4 HOH X 22 222 47 HOH HOH . 
F 4 HOH X 23 223 64 HOH HOH . 
F 4 HOH X 24 224 23 HOH HOH . 
F 4 HOH X 25 225 24 HOH HOH . 
F 4 HOH X 26 226 1 HOH HOH . 
F 4 HOH X 27 227 82 HOH HOH . 
F 4 HOH X 28 228 36 HOH HOH . 
F 4 HOH X 29 229 43 HOH HOH . 
F 4 HOH X 30 230 30 HOH HOH . 
F 4 HOH X 31 231 62 HOH HOH . 
F 4 HOH X 32 232 73 HOH HOH . 
F 4 HOH X 33 233 67 HOH HOH . 
F 4 HOH X 34 234 33 HOH HOH . 
F 4 HOH X 35 235 133 HOH HOH . 
F 4 HOH X 36 236 6 HOH HOH . 
F 4 HOH X 37 237 74 HOH HOH . 
F 4 HOH X 38 238 71 HOH HOH . 
F 4 HOH X 39 239 58 HOH HOH . 
F 4 HOH X 40 240 10 HOH HOH . 
F 4 HOH X 41 241 11 HOH HOH . 
F 4 HOH X 42 242 94 HOH HOH . 
F 4 HOH X 43 243 34 HOH HOH . 
F 4 HOH X 44 244 32 HOH HOH . 
F 4 HOH X 45 245 88 HOH HOH . 
F 4 HOH X 46 246 63 HOH HOH . 
F 4 HOH X 47 247 59 HOH HOH . 
F 4 HOH X 48 248 18 HOH HOH . 
F 4 HOH X 49 249 20 HOH HOH . 
F 4 HOH X 50 250 123 HOH HOH . 
F 4 HOH X 51 251 49 HOH HOH . 
F 4 HOH X 52 252 3 HOH HOH . 
F 4 HOH X 53 253 55 HOH HOH . 
F 4 HOH X 54 254 4 HOH HOH . 
F 4 HOH X 55 255 84 HOH HOH . 
F 4 HOH X 56 256 14 HOH HOH . 
F 4 HOH X 57 257 9 HOH HOH . 
F 4 HOH X 58 258 35 HOH HOH . 
F 4 HOH X 59 259 7 HOH HOH . 
F 4 HOH X 60 260 15 HOH HOH . 
F 4 HOH X 61 261 16 HOH HOH . 
F 4 HOH X 62 262 28 HOH HOH . 
F 4 HOH X 63 263 45 HOH HOH . 
F 4 HOH X 64 264 93 HOH HOH . 
F 4 HOH X 65 265 53 HOH HOH . 
F 4 HOH X 66 266 60 HOH HOH . 
F 4 HOH X 67 267 17 HOH HOH . 
F 4 HOH X 68 268 118 HOH HOH . 
F 4 HOH X 69 269 8 HOH HOH . 
F 4 HOH X 70 270 40 HOH HOH . 
F 4 HOH X 71 271 57 HOH HOH . 
F 4 HOH X 72 272 79 HOH HOH . 
F 4 HOH X 73 273 19 HOH HOH . 
F 4 HOH X 74 274 27 HOH HOH . 
F 4 HOH X 75 275 39 HOH HOH . 
F 4 HOH X 76 276 100 HOH HOH . 
F 4 HOH X 77 277 42 HOH HOH . 
F 4 HOH X 78 278 113 HOH HOH . 
F 4 HOH X 79 279 110 HOH HOH . 
F 4 HOH X 80 280 87 HOH HOH . 
F 4 HOH X 81 281 65 HOH HOH . 
F 4 HOH X 82 282 76 HOH HOH . 
F 4 HOH X 83 283 91 HOH HOH . 
F 4 HOH X 84 284 37 HOH HOH . 
F 4 HOH X 85 285 108 HOH HOH . 
F 4 HOH X 86 286 116 HOH HOH . 
F 4 HOH X 87 287 22 HOH HOH . 
F 4 HOH X 88 288 68 HOH HOH . 
F 4 HOH X 89 289 25 HOH HOH . 
F 4 HOH X 90 290 138 HOH HOH . 
F 4 HOH X 91 291 90 HOH HOH . 
F 4 HOH X 92 292 89 HOH HOH . 
F 4 HOH X 93 293 127 HOH HOH . 
F 4 HOH X 94 294 50 HOH HOH . 
F 4 HOH X 95 295 105 HOH HOH . 
F 4 HOH X 96 296 134 HOH HOH . 
F 4 HOH X 97 297 99 HOH HOH . 
F 4 HOH X 98 298 135 HOH HOH . 
F 4 HOH X 99 299 95 HOH HOH . 
F 4 HOH X 100 300 98 HOH HOH . 
F 4 HOH X 101 301 29 HOH HOH . 
F 4 HOH X 102 302 129 HOH HOH . 
F 4 HOH X 103 303 137 HOH HOH . 
F 4 HOH X 104 304 69 HOH HOH . 
F 4 HOH X 105 305 102 HOH HOH . 
F 4 HOH X 106 306 52 HOH HOH . 
F 4 HOH X 107 307 46 HOH HOH . 
F 4 HOH X 108 308 101 HOH HOH . 
F 4 HOH X 109 309 66 HOH HOH . 
F 4 HOH X 110 310 38 HOH HOH . 
F 4 HOH X 111 311 61 HOH HOH . 
F 4 HOH X 112 312 97 HOH HOH . 
F 4 HOH X 113 313 44 HOH HOH . 
F 4 HOH X 114 314 54 HOH HOH . 
F 4 HOH X 115 315 131 HOH HOH . 
F 4 HOH X 116 316 51 HOH HOH . 
F 4 HOH X 117 317 41 HOH HOH . 
F 4 HOH X 118 318 107 HOH HOH . 
F 4 HOH X 119 319 103 HOH HOH . 
F 4 HOH X 120 320 31 HOH HOH . 
F 4 HOH X 121 321 104 HOH HOH . 
F 4 HOH X 122 322 12 HOH HOH . 
F 4 HOH X 123 323 117 HOH HOH . 
F 4 HOH X 124 324 96 HOH HOH . 
F 4 HOH X 125 325 109 HOH HOH . 
F 4 HOH X 126 326 124 HOH HOH . 
F 4 HOH X 127 327 70 HOH HOH . 
F 4 HOH X 128 328 119 HOH HOH . 
F 4 HOH X 129 329 56 HOH HOH . 
F 4 HOH X 130 330 78 HOH HOH . 
F 4 HOH X 131 331 21 HOH HOH . 
F 4 HOH X 132 332 132 HOH HOH . 
F 4 HOH X 133 333 115 HOH HOH . 
F 4 HOH X 134 334 130 HOH HOH . 
F 4 HOH X 135 335 111 HOH HOH . 
F 4 HOH X 136 336 121 HOH HOH . 
F 4 HOH X 137 337 120 HOH HOH . 
F 4 HOH X 138 338 125 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 5RL . . . D 3 36.395 -4.185 13.491 1 23.57 ? C10 5RL 103 X 1 
HETATM 2 C C11 5RL . . . D 3 35.912 -1.964 12.812 1 25.59 ? C11 5RL 103 X 1 
HETATM 3 C C12 5RL . . . D 3 36.779 -2.812 13.439 1 23.19 ? C12 5RL 103 X 1 
HETATM 4 C C13 5RL . . . D 3 31.749 -3.224 11.868 1 27.42 ? C13 5RL 103 X 1 
HETATM 5 C C14 5RL . . . D 3 35.619 -6.922 13.583 1 27.04 ? C14 5RL 103 X 1 
HETATM 6 C C15 5RL . . . D 3 37.225 -5.119 14.097 1 30 ? C15 5RL 103 X 1 
HETATM 7 C C16 5RL . . . D 3 36.154 -0.586 12.68 1 27.9 ? C16 5RL 103 X 1 
HETATM 8 C C19 5RL . . . D 3 38.202 -0.858 13.828 1 23.66 ? C19 5RL 103 X 1 
HETATM 9 C C20 5RL . . . D 3 37.308 -0.031 13.195 1 24.62 ? C20 5RL 103 X 1 
HETATM 10 O O01 5RL . . . D 3 38.98 -2.873 14.645 1 29.08 ? O01 5RL 103 X 1 
HETATM 11 O O02 5RL . . . D 3 39.366 -0.339 14.373 1 26.05 ? O02 5RL 103 X 1 
HETATM 12 N N03 5RL . . . D 3 32.855 -4.102 12.2 1 31.23 ? N03 5RL 103 X 1 
HETATM 13 C C04 5RL . . . D 3 34.25 -3.726 12.292 1 29.94 ? C04 5RL 103 X 1 
HETATM 14 C C05 5RL . . . D 3 35.183 -4.667 12.946 1 24.47 ? C05 5RL 103 X 1 
HETATM 15 C C06 5RL . . . D 3 34.639 -2.291 12.195 1 27.38 ? C06 5RL 103 X 1 
HETATM 16 C C07 5RL . . . D 3 34.821 -5.95 12.99 1 24.75 ? C07 5RL 103 X 1 
HETATM 17 C C08 5RL . . . D 3 32.441 -5.501 12.442 1 31.59 ? C08 5RL 103 X 1 
HETATM 18 C C09 5RL . . . D 3 33.566 -6.572 12.455 1 29.24 ? C09 5RL 103 X 1 
HETATM 19 C C17 5RL . . . D 3 37.969 -2.219 13.966 1 24.07 ? C17 5RL 103 X 1 
HETATM 20 C C18 5RL . . . D 3 36.84 -6.476 14.147 1 26.86 ? C18 5RL 103 X 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           20 
#