data_5ER5 # _model_server_result.job_id Wgz9gqpNMu8uqHPlhP00GQ _model_server_result.datetime_utc '2024-11-29 03:03:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5er5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":103}' # _entry.id 5ER5 # _exptl.entry_id 5ER5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.404 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ETHIDIUM _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ER5 _cell.length_a 35.418 _cell.length_b 88.279 _cell.length_c 59.114 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ER5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 19 A SER 18 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc2 A O GLU 22 A GLU 21 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc3 A O ASP 24 A ASP 23 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc4 A O LYS 27 A LYS 26 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc5 A OE1 GLU 32 A GLU 31 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc6 A OE2 GLU 32 A GLU 31 1_555 B CA CA . A CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc7 A OD1 ASP 62 A ASP 61 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc8 A OD1 ASP 64 A ASP 63 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc9 A OD1 ASP 66 A ASP 65 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc10 A O GLU 68 A GLU 67 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc11 A OE1 GLU 73 A GLU 72 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc12 A OE2 GLU 73 A GLU 72 1_555 C CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc13 B CA CA . A CA 101 1_555 E O HOH . A HOH 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc14 C CA CA . A CA 102 1_555 E O HOH . A HOH 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? # _chem_comp.formula 'C21 H20 N3 1' _chem_comp.formula_weight 314.404 _chem_comp.id ET _chem_comp.mon_nstd_flag . _chem_comp.name ETHIDIUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ET doub 83 n y C1 C13 ET sing 84 n y C1 H1 ET sing 85 n n C2 C3 ET sing 86 n y C2 H2 ET sing 87 n n C3 C4 ET doub 88 n y C3 N23 ET sing 89 n n C4 C14 ET sing 90 n y C4 H4 ET sing 91 n n N5 C6 ET doub 92 n y N5 C14 ET sing 93 n y N5 C21 ET sing 94 n n C6 C11 ET sing 95 n y C6 C15 ET sing 96 n y C7 C8 ET doub 97 n y C7 C11 ET sing 98 n y C7 H7 ET sing 99 n n C8 C9 ET sing 100 n y C8 N24 ET sing 101 n n C9 C10 ET doub 102 n y C9 H9 ET sing 103 n n C10 C12 ET sing 104 n y C10 H10 ET sing 105 n n C11 C12 ET doub 106 n y C12 C13 ET sing 107 n y C13 C14 ET doub 108 n y C15 C16 ET doub 109 n y C15 C20 ET sing 110 n y C16 C17 ET sing 111 n y C16 H16 ET sing 112 n n C17 C18 ET doub 113 n y C17 H17 ET sing 114 n n C18 C19 ET sing 115 n y C18 H18 ET sing 116 n n C19 C20 ET doub 117 n y C19 H19 ET sing 118 n n C20 H20 ET sing 119 n n C21 C22 ET sing 120 n n C21 H211 ET sing 121 n n C21 H212 ET sing 122 n n C22 H221 ET sing 123 n n C22 H222 ET sing 124 n n C22 H223 ET sing 125 n n N23 H231 ET sing 126 n n N23 H232 ET sing 127 n n N24 H241 ET sing 128 n n N24 H242 ET sing 129 n n # _atom_sites.entry_id 5ER5 _atom_sites.fract_transf_matrix[1][1] 0.028234 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011328 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016916 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 101 100 CA CA . C 2 CA A 1 102 101 CA CA . D 3 ET A 1 103 1 ET ET . E 4 HOH A 1 201 141 HOH HOH . E 4 HOH A 2 202 126 HOH HOH . E 4 HOH A 3 203 105 HOH HOH . E 4 HOH A 4 204 162 HOH HOH . E 4 HOH A 5 205 84 HOH HOH . E 4 HOH A 6 206 54 HOH HOH . E 4 HOH A 7 207 81 HOH HOH . E 4 HOH A 8 208 43 HOH HOH . E 4 HOH A 9 209 122 HOH HOH . E 4 HOH A 10 210 19 HOH HOH . E 4 HOH A 11 211 117 HOH HOH . E 4 HOH A 12 212 58 HOH HOH . E 4 HOH A 13 213 60 HOH HOH . E 4 HOH A 14 214 36 HOH HOH . E 4 HOH A 15 215 22 HOH HOH . E 4 HOH A 16 216 2 HOH HOH . E 4 HOH A 17 217 69 HOH HOH . E 4 HOH A 18 218 75 HOH HOH . E 4 HOH A 19 219 49 HOH HOH . E 4 HOH A 20 220 18 HOH HOH . E 4 HOH A 21 221 85 HOH HOH . E 4 HOH A 22 222 149 HOH HOH . E 4 HOH A 23 223 131 HOH HOH . E 4 HOH A 24 224 64 HOH HOH . E 4 HOH A 25 225 68 HOH HOH . E 4 HOH A 26 226 44 HOH HOH . E 4 HOH A 27 227 42 HOH HOH . E 4 HOH A 28 228 160 HOH HOH . E 4 HOH A 29 229 4 HOH HOH . E 4 HOH A 30 230 35 HOH HOH . E 4 HOH A 31 231 48 HOH HOH . E 4 HOH A 32 232 41 HOH HOH . E 4 HOH A 33 233 14 HOH HOH . E 4 HOH A 34 234 114 HOH HOH . E 4 HOH A 35 235 6 HOH HOH . E 4 HOH A 36 236 100 HOH HOH . E 4 HOH A 37 237 59 HOH HOH . E 4 HOH A 38 238 21 HOH HOH . E 4 HOH A 39 239 53 HOH HOH . E 4 HOH A 40 240 12 HOH HOH . E 4 HOH A 41 241 31 HOH HOH . E 4 HOH A 42 242 13 HOH HOH . E 4 HOH A 43 243 11 HOH HOH . E 4 HOH A 44 244 170 HOH HOH . E 4 HOH A 45 245 90 HOH HOH . E 4 HOH A 46 246 32 HOH HOH . E 4 HOH A 47 247 17 HOH HOH . E 4 HOH A 48 248 101 HOH HOH . E 4 HOH A 49 249 93 HOH HOH . E 4 HOH A 50 250 8 HOH HOH . E 4 HOH A 51 251 174 HOH HOH . E 4 HOH A 52 252 7 HOH HOH . E 4 HOH A 53 253 9 HOH HOH . E 4 HOH A 54 254 24 HOH HOH . E 4 HOH A 55 255 5 HOH HOH . E 4 HOH A 56 256 30 HOH HOH . E 4 HOH A 57 257 51 HOH HOH . E 4 HOH A 58 258 102 HOH HOH . E 4 HOH A 59 259 95 HOH HOH . E 4 HOH A 60 260 137 HOH HOH . E 4 HOH A 61 261 97 HOH HOH . E 4 HOH A 62 262 166 HOH HOH . E 4 HOH A 63 263 20 HOH HOH . E 4 HOH A 64 264 23 HOH HOH . E 4 HOH A 65 265 47 HOH HOH . E 4 HOH A 66 266 135 HOH HOH . E 4 HOH A 67 267 144 HOH HOH . E 4 HOH A 68 268 3 HOH HOH . E 4 HOH A 69 269 46 HOH HOH . E 4 HOH A 70 270 89 HOH HOH . E 4 HOH A 71 271 25 HOH HOH . E 4 HOH A 72 272 107 HOH HOH . E 4 HOH A 73 273 63 HOH HOH . E 4 HOH A 74 274 171 HOH HOH . E 4 HOH A 75 275 34 HOH HOH . E 4 HOH A 76 276 177 HOH HOH . E 4 HOH A 77 277 99 HOH HOH . E 4 HOH A 78 278 16 HOH HOH . E 4 HOH A 79 279 173 HOH HOH . E 4 HOH A 80 280 125 HOH HOH . E 4 HOH A 81 281 10 HOH HOH . E 4 HOH A 82 282 27 HOH HOH . E 4 HOH A 83 283 45 HOH HOH . E 4 HOH A 84 284 104 HOH HOH . E 4 HOH A 85 285 28 HOH HOH . E 4 HOH A 86 286 124 HOH HOH . E 4 HOH A 87 287 65 HOH HOH . E 4 HOH A 88 288 139 HOH HOH . E 4 HOH A 89 289 152 HOH HOH . E 4 HOH A 90 290 15 HOH HOH . E 4 HOH A 91 291 92 HOH HOH . E 4 HOH A 92 292 33 HOH HOH . E 4 HOH A 93 293 55 HOH HOH . E 4 HOH A 94 294 98 HOH HOH . E 4 HOH A 95 295 175 HOH HOH . E 4 HOH A 96 296 106 HOH HOH . E 4 HOH A 97 297 119 HOH HOH . E 4 HOH A 98 298 148 HOH HOH . E 4 HOH A 99 299 37 HOH HOH . E 4 HOH A 100 300 159 HOH HOH . E 4 HOH A 101 301 169 HOH HOH . E 4 HOH A 102 302 103 HOH HOH . E 4 HOH A 103 303 154 HOH HOH . E 4 HOH A 104 304 179 HOH HOH . E 4 HOH A 105 305 178 HOH HOH . E 4 HOH A 106 306 88 HOH HOH . E 4 HOH A 107 307 165 HOH HOH . E 4 HOH A 108 308 73 HOH HOH . E 4 HOH A 109 309 38 HOH HOH . E 4 HOH A 110 310 176 HOH HOH . E 4 HOH A 111 311 72 HOH HOH . E 4 HOH A 112 312 133 HOH HOH . E 4 HOH A 113 313 123 HOH HOH . E 4 HOH A 114 314 66 HOH HOH . E 4 HOH A 115 315 134 HOH HOH . E 4 HOH A 116 316 94 HOH HOH . E 4 HOH A 117 317 61 HOH HOH . E 4 HOH A 118 318 91 HOH HOH . E 4 HOH A 119 319 155 HOH HOH . E 4 HOH A 120 320 70 HOH HOH . E 4 HOH A 121 321 26 HOH HOH . E 4 HOH A 122 322 121 HOH HOH . E 4 HOH A 123 323 136 HOH HOH . E 4 HOH A 124 324 150 HOH HOH . E 4 HOH A 125 325 116 HOH HOH . E 4 HOH A 126 326 80 HOH HOH . E 4 HOH A 127 327 77 HOH HOH . E 4 HOH A 128 328 57 HOH HOH . E 4 HOH A 129 329 172 HOH HOH . E 4 HOH A 130 330 151 HOH HOH . E 4 HOH A 131 331 109 HOH HOH . E 4 HOH A 132 332 87 HOH HOH . E 4 HOH A 133 333 108 HOH HOH . E 4 HOH A 134 334 52 HOH HOH . E 4 HOH A 135 335 113 HOH HOH . E 4 HOH A 136 336 127 HOH HOH . E 4 HOH A 137 337 115 HOH HOH . E 4 HOH A 138 338 143 HOH HOH . E 4 HOH A 139 339 118 HOH HOH . E 4 HOH A 140 340 138 HOH HOH . E 4 HOH A 141 341 74 HOH HOH . E 4 HOH A 142 342 111 HOH HOH . E 4 HOH A 143 343 130 HOH HOH . E 4 HOH A 144 344 83 HOH HOH . E 4 HOH A 145 345 39 HOH HOH . E 4 HOH A 146 346 40 HOH HOH . E 4 HOH A 147 347 96 HOH HOH . E 4 HOH A 148 348 145 HOH HOH . E 4 HOH A 149 349 140 HOH HOH . E 4 HOH A 150 350 112 HOH HOH . E 4 HOH A 151 351 71 HOH HOH . E 4 HOH A 152 352 50 HOH HOH . E 4 HOH A 153 353 161 HOH HOH . E 4 HOH A 154 354 29 HOH HOH . E 4 HOH A 155 355 156 HOH HOH . E 4 HOH A 156 356 82 HOH HOH . E 4 HOH A 157 357 79 HOH HOH . E 4 HOH A 158 358 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ET . . . D 3 -0.774 9.465 15.239 0.5 20.88 ? C1 ET 103 A 1 HETATM 2 C C2 ET . . . D 3 -1.587 10.012 16.22 0.5 21.67 ? C2 ET 103 A 1 HETATM 3 C C3 ET . . . D 3 -2.31 9.198 17.063 0.5 22.78 ? C3 ET 103 A 1 HETATM 4 C C4 ET . . . D 3 -2.24 7.805 16.926 0.5 22.28 ? C4 ET 103 A 1 HETATM 5 N N5 ET . . . D 3 -1.343 5.892 15.791 0.5 21.86 ? N5 ET 103 A 1 HETATM 6 C C6 ET . . . D 3 -0.577 5.285 14.863 0.5 20.38 ? C6 ET 103 A 1 HETATM 7 C C7 ET . . . D 3 0.978 5.425 12.986 0.5 18.1 ? C7 ET 103 A 1 HETATM 8 C C8 ET . . . D 3 1.744 6.216 12.117 0.5 16.66 ? C8 ET 103 A 1 HETATM 9 C C9 ET . . . D 3 1.705 7.602 12.218 0.5 17.59 ? C9 ET 103 A 1 HETATM 10 C C10 ET . . . D 3 0.919 8.235 13.187 0.5 17.77 ? C10 ET 103 A 1 HETATM 11 C C11 ET . . . D 3 0.188 6.05 13.96 0.5 18.95 ? C11 ET 103 A 1 HETATM 12 C C12 ET . . . D 3 0.147 7.481 14.065 0.5 19.13 ? C12 ET 103 A 1 HETATM 13 C C13 ET . . . D 3 -0.686 8.072 15.084 0.5 20.46 ? C13 ET 103 A 1 HETATM 14 C C14 ET . . . D 3 -1.421 7.22 15.931 0.5 21.41 ? C14 ET 103 A 1 HETATM 15 C C15 ET . . . D 3 -0.525 3.87 14.727 0.5 21.21 ? C15 ET 103 A 1 HETATM 16 C C16 ET . . . D 3 0.482 3.117 15.343 0.5 21.73 ? C16 ET 103 A 1 HETATM 17 C C17 ET . . . D 3 0.511 1.731 15.171 0.5 21.99 ? C17 ET 103 A 1 HETATM 18 C C18 ET . . . D 3 -0.448 1.101 14.39 0.5 22.55 ? C18 ET 103 A 1 HETATM 19 C C19 ET . . . D 3 -1.445 1.842 13.77 0.5 22.95 ? C19 ET 103 A 1 HETATM 20 C C20 ET . . . D 3 -1.481 3.234 13.932 0.5 21.55 ? C20 ET 103 A 1 HETATM 21 C C21 ET . . . D 3 -2.104 5.041 16.694 0.5 23.02 ? C21 ET 103 A 1 HETATM 22 C C22 ET . . . D 3 -1.618 5.157 18.117 0.5 24.07 ? C22 ET 103 A 1 HETATM 23 N N23 ET . . . D 3 -3.147 9.781 18.085 0.5 24.24 ? N23 ET 103 A 1 HETATM 24 N N24 ET . . . D 3 2.562 5.604 11.1 0.5 17.03 ? N24 ET 103 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #