data_5ERE # _model_server_result.job_id ah2uYWnaub7gR911tbPV5A _model_server_result.datetime_utc '2024-11-23 07:07:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ere # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":606}' # _entry.id 5ERE # _exptl.entry_id 5ERE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ERE _cell.length_a 104.946 _cell.length_b 104.946 _cell.length_c 140.181 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ERE _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 133 A ALA 164 1_555 A N MSE 134 A MSE 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale2 A C MSE 134 A MSE 165 1_555 A N ASP 135 A ASP 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C ARG 144 A ARG 175 1_555 A N MSE 145 A MSE 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 145 A MSE 176 1_555 A N LEU 146 A LEU 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale5 A C GLN 164 A GLN 195 1_555 A N MSE 165 A MSE 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C MSE 165 A MSE 196 1_555 A N ASP 166 A ASP 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale7 A C PHE 240 A PHE 271 1_555 A N MSE 241 A MSE 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C MSE 241 A MSE 272 1_555 A N SER 242 A SER 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale9 A C PRO 326 A PRO 357 1_555 A N MSE 327 A MSE 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale10 A C MSE 327 A MSE 358 1_555 A N LEU 328 A LEU 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale11 A C ASP 342 A ASP 373 1_555 A N MSE 343 A MSE 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale12 A C MSE 343 A MSE 374 1_555 A N ASP 344 A ASP 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale13 A C LYS 428 A LYS 459 1_555 A N MSE 429 A MSE 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale14 A C MSE 429 A MSE 460 1_555 A N VAL 430 A VAL 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale15 A C LYS 517 A LYS 548 1_555 A N MSE 518 A MSE 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale16 A C MSE 518 A MSE 549 1_555 A N VAL 519 A VAL 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A O GLU 282 A GLU 313 1_555 E CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc2 A OE2 GLU 282 A GLU 313 1_555 E CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc3 A O ALA 285 A ALA 316 1_555 E CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc4 A OD1 ASN 287 A ASN 318 1_555 E CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc5 A OE1 GLU 369 A GLU 400 1_555 E CA CA . A CA 604 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc6 E CA CA . A CA 604 1_555 I O HOH . A HOH 782 4_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 121 n n C1 C2 EDO sing 122 n n C1 H11 EDO sing 123 n n C1 H12 EDO sing 124 n n O1 HO1 EDO sing 125 n n C2 O2 EDO sing 126 n n C2 H21 EDO sing 127 n n C2 H22 EDO sing 128 n n O2 HO2 EDO sing 129 n n # _atom_sites.entry_id 5ERE _atom_sites.fract_transf_matrix[1][1] 0.009529 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007134 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COI A 1 601 1 COI COI . C 3 CYT A 1 602 1 CYT CYT . D 4 ACY A 1 603 1 ACY ACY . E 5 CA A 1 604 1 CA CA . F 6 GOL A 1 605 1 GOL GOL . G 7 EDO A 1 606 1 EDO EDO . H 7 EDO A 1 607 1 EDO EDO . I 8 HOH A 1 701 187 HOH HOH . I 8 HOH A 2 702 176 HOH HOH . I 8 HOH A 3 703 99 HOH HOH . I 8 HOH A 4 704 165 HOH HOH . I 8 HOH A 5 705 208 HOH HOH . I 8 HOH A 6 706 153 HOH HOH . I 8 HOH A 7 707 206 HOH HOH . I 8 HOH A 8 708 37 HOH HOH . I 8 HOH A 9 709 22 HOH HOH . I 8 HOH A 10 710 152 HOH HOH . I 8 HOH A 11 711 74 HOH HOH . I 8 HOH A 12 712 170 HOH HOH . I 8 HOH A 13 713 83 HOH HOH . I 8 HOH A 14 714 100 HOH HOH . I 8 HOH A 15 715 26 HOH HOH . I 8 HOH A 16 716 23 HOH HOH . I 8 HOH A 17 717 103 HOH HOH . I 8 HOH A 18 718 215 HOH HOH . I 8 HOH A 19 719 171 HOH HOH . I 8 HOH A 20 720 84 HOH HOH . I 8 HOH A 21 721 195 HOH HOH . I 8 HOH A 22 722 16 HOH HOH . I 8 HOH A 23 723 196 HOH HOH . I 8 HOH A 24 724 59 HOH HOH . I 8 HOH A 25 725 233 HOH HOH . I 8 HOH A 26 726 209 HOH HOH . I 8 HOH A 27 727 88 HOH HOH . I 8 HOH A 28 728 211 HOH HOH . I 8 HOH A 29 729 175 HOH HOH . I 8 HOH A 30 730 157 HOH HOH . I 8 HOH A 31 731 109 HOH HOH . I 8 HOH A 32 732 12 HOH HOH . I 8 HOH A 33 733 181 HOH HOH . I 8 HOH A 34 734 212 HOH HOH . I 8 HOH A 35 735 28 HOH HOH . I 8 HOH A 36 736 113 HOH HOH . I 8 HOH A 37 737 133 HOH HOH . I 8 HOH A 38 738 17 HOH HOH . I 8 HOH A 39 739 4 HOH HOH . I 8 HOH A 40 740 64 HOH HOH . I 8 HOH A 41 741 21 HOH HOH . I 8 HOH A 42 742 3 HOH HOH . I 8 HOH A 43 743 200 HOH HOH . I 8 HOH A 44 744 70 HOH HOH . I 8 HOH A 45 745 2 HOH HOH . I 8 HOH A 46 746 104 HOH HOH . I 8 HOH A 47 747 80 HOH HOH . I 8 HOH A 48 748 102 HOH HOH . I 8 HOH A 49 749 96 HOH HOH . I 8 HOH A 50 750 62 HOH HOH . I 8 HOH A 51 751 45 HOH HOH . I 8 HOH A 52 752 47 HOH HOH . I 8 HOH A 53 753 120 HOH HOH . I 8 HOH A 54 754 39 HOH HOH . I 8 HOH A 55 755 42 HOH HOH . I 8 HOH A 56 756 148 HOH HOH . I 8 HOH A 57 757 24 HOH HOH . I 8 HOH A 58 758 158 HOH HOH . I 8 HOH A 59 759 18 HOH HOH . I 8 HOH A 60 760 1 HOH HOH . I 8 HOH A 61 761 49 HOH HOH . I 8 HOH A 62 762 98 HOH HOH . I 8 HOH A 63 763 202 HOH HOH . I 8 HOH A 64 764 46 HOH HOH . I 8 HOH A 65 765 9 HOH HOH . I 8 HOH A 66 766 194 HOH HOH . I 8 HOH A 67 767 217 HOH HOH . I 8 HOH A 68 768 48 HOH HOH . I 8 HOH A 69 769 167 HOH HOH . I 8 HOH A 70 770 87 HOH HOH . I 8 HOH A 71 771 65 HOH HOH . I 8 HOH A 72 772 73 HOH HOH . I 8 HOH A 73 773 71 HOH HOH . I 8 HOH A 74 774 56 HOH HOH . I 8 HOH A 75 775 234 HOH HOH . I 8 HOH A 76 776 127 HOH HOH . I 8 HOH A 77 777 51 HOH HOH . I 8 HOH A 78 778 29 HOH HOH . I 8 HOH A 79 779 134 HOH HOH . I 8 HOH A 80 780 146 HOH HOH . I 8 HOH A 81 781 85 HOH HOH . I 8 HOH A 82 782 138 HOH HOH . I 8 HOH A 83 783 117 HOH HOH . I 8 HOH A 84 784 31 HOH HOH . I 8 HOH A 85 785 106 HOH HOH . I 8 HOH A 86 786 33 HOH HOH . I 8 HOH A 87 787 15 HOH HOH . I 8 HOH A 88 788 111 HOH HOH . I 8 HOH A 89 789 177 HOH HOH . I 8 HOH A 90 790 169 HOH HOH . I 8 HOH A 91 791 50 HOH HOH . I 8 HOH A 92 792 112 HOH HOH . I 8 HOH A 93 793 239 HOH HOH . I 8 HOH A 94 794 7 HOH HOH . I 8 HOH A 95 795 225 HOH HOH . I 8 HOH A 96 796 82 HOH HOH . I 8 HOH A 97 797 172 HOH HOH . I 8 HOH A 98 798 66 HOH HOH . I 8 HOH A 99 799 213 HOH HOH . I 8 HOH A 100 800 115 HOH HOH . I 8 HOH A 101 801 218 HOH HOH . I 8 HOH A 102 802 14 HOH HOH . I 8 HOH A 103 803 97 HOH HOH . I 8 HOH A 104 804 204 HOH HOH . I 8 HOH A 105 805 44 HOH HOH . I 8 HOH A 106 806 79 HOH HOH . I 8 HOH A 107 807 13 HOH HOH . I 8 HOH A 108 808 34 HOH HOH . I 8 HOH A 109 809 32 HOH HOH . I 8 HOH A 110 810 235 HOH HOH . I 8 HOH A 111 811 68 HOH HOH . I 8 HOH A 112 812 142 HOH HOH . I 8 HOH A 113 813 136 HOH HOH . I 8 HOH A 114 814 240 HOH HOH . I 8 HOH A 115 815 155 HOH HOH . I 8 HOH A 116 816 150 HOH HOH . I 8 HOH A 117 817 94 HOH HOH . I 8 HOH A 118 818 192 HOH HOH . I 8 HOH A 119 819 55 HOH HOH . I 8 HOH A 120 820 52 HOH HOH . I 8 HOH A 121 821 35 HOH HOH . I 8 HOH A 122 822 8 HOH HOH . I 8 HOH A 123 823 57 HOH HOH . I 8 HOH A 124 824 93 HOH HOH . I 8 HOH A 125 825 76 HOH HOH . I 8 HOH A 126 826 121 HOH HOH . I 8 HOH A 127 827 114 HOH HOH . I 8 HOH A 128 828 19 HOH HOH . I 8 HOH A 129 829 30 HOH HOH . I 8 HOH A 130 830 185 HOH HOH . I 8 HOH A 131 831 230 HOH HOH . I 8 HOH A 132 832 69 HOH HOH . I 8 HOH A 133 833 156 HOH HOH . I 8 HOH A 134 834 6 HOH HOH . I 8 HOH A 135 835 238 HOH HOH . I 8 HOH A 136 836 160 HOH HOH . I 8 HOH A 137 837 110 HOH HOH . I 8 HOH A 138 838 147 HOH HOH . I 8 HOH A 139 839 143 HOH HOH . I 8 HOH A 140 840 125 HOH HOH . I 8 HOH A 141 841 178 HOH HOH . I 8 HOH A 142 842 41 HOH HOH . I 8 HOH A 143 843 20 HOH HOH . I 8 HOH A 144 844 25 HOH HOH . I 8 HOH A 145 845 72 HOH HOH . I 8 HOH A 146 846 191 HOH HOH . I 8 HOH A 147 847 168 HOH HOH . I 8 HOH A 148 848 107 HOH HOH . I 8 HOH A 149 849 58 HOH HOH . I 8 HOH A 150 850 10 HOH HOH . I 8 HOH A 151 851 75 HOH HOH . I 8 HOH A 152 852 78 HOH HOH . I 8 HOH A 153 853 141 HOH HOH . I 8 HOH A 154 854 118 HOH HOH . I 8 HOH A 155 855 207 HOH HOH . I 8 HOH A 156 856 182 HOH HOH . I 8 HOH A 157 857 36 HOH HOH . I 8 HOH A 158 858 180 HOH HOH . I 8 HOH A 159 859 149 HOH HOH . I 8 HOH A 160 860 154 HOH HOH . I 8 HOH A 161 861 27 HOH HOH . I 8 HOH A 162 862 119 HOH HOH . I 8 HOH A 163 863 92 HOH HOH . I 8 HOH A 164 864 43 HOH HOH . I 8 HOH A 165 865 214 HOH HOH . I 8 HOH A 166 866 11 HOH HOH . I 8 HOH A 167 867 123 HOH HOH . I 8 HOH A 168 868 95 HOH HOH . I 8 HOH A 169 869 124 HOH HOH . I 8 HOH A 170 870 38 HOH HOH . I 8 HOH A 171 871 224 HOH HOH . I 8 HOH A 172 872 229 HOH HOH . I 8 HOH A 173 873 190 HOH HOH . I 8 HOH A 174 874 227 HOH HOH . I 8 HOH A 175 875 54 HOH HOH . I 8 HOH A 176 876 137 HOH HOH . I 8 HOH A 177 877 40 HOH HOH . I 8 HOH A 178 878 220 HOH HOH . I 8 HOH A 179 879 126 HOH HOH . I 8 HOH A 180 880 221 HOH HOH . I 8 HOH A 181 881 131 HOH HOH . I 8 HOH A 182 882 237 HOH HOH . I 8 HOH A 183 883 5 HOH HOH . I 8 HOH A 184 884 132 HOH HOH . I 8 HOH A 185 885 161 HOH HOH . I 8 HOH A 186 886 67 HOH HOH . I 8 HOH A 187 887 53 HOH HOH . I 8 HOH A 188 888 203 HOH HOH . I 8 HOH A 189 889 205 HOH HOH . I 8 HOH A 190 890 90 HOH HOH . I 8 HOH A 191 891 232 HOH HOH . I 8 HOH A 192 892 101 HOH HOH . I 8 HOH A 193 893 163 HOH HOH . I 8 HOH A 194 894 186 HOH HOH . I 8 HOH A 195 895 77 HOH HOH . I 8 HOH A 196 896 210 HOH HOH . I 8 HOH A 197 897 184 HOH HOH . I 8 HOH A 198 898 122 HOH HOH . I 8 HOH A 199 899 135 HOH HOH . I 8 HOH A 200 900 128 HOH HOH . I 8 HOH A 201 901 145 HOH HOH . I 8 HOH A 202 902 139 HOH HOH . I 8 HOH A 203 903 216 HOH HOH . I 8 HOH A 204 904 63 HOH HOH . I 8 HOH A 205 905 105 HOH HOH . I 8 HOH A 206 906 199 HOH HOH . I 8 HOH A 207 907 86 HOH HOH . I 8 HOH A 208 908 179 HOH HOH . I 8 HOH A 209 909 219 HOH HOH . I 8 HOH A 210 910 189 HOH HOH . I 8 HOH A 211 911 91 HOH HOH . I 8 HOH A 212 912 61 HOH HOH . I 8 HOH A 213 913 222 HOH HOH . I 8 HOH A 214 914 60 HOH HOH . I 8 HOH A 215 915 89 HOH HOH . I 8 HOH A 216 916 108 HOH HOH . I 8 HOH A 217 917 236 HOH HOH . I 8 HOH A 218 918 81 HOH HOH . I 8 HOH A 219 919 144 HOH HOH . I 8 HOH A 220 920 174 HOH HOH . I 8 HOH A 221 921 140 HOH HOH . I 8 HOH A 222 922 129 HOH HOH . I 8 HOH A 223 923 197 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 7 28.38 3.623 22.977 1 46 ? C1 EDO 606 A 1 HETATM 2 O O1 EDO . . . G 7 27.08 3.459 23.56 1 51.06 ? O1 EDO 606 A 1 HETATM 3 C C2 EDO . . . G 7 28.26 3.221 21.521 1 53.19 ? C2 EDO 606 A 1 HETATM 4 O O2 EDO . . . G 7 28.944 4.166 20.693 1 58.48 ? O2 EDO 606 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #