data_5ERG # _model_server_result.job_id nTMUFS0VnO3P-xW4urN8HA _model_server_result.datetime_utc '2024-10-28 02:26:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5erg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5ERG # _exptl.entry_id 5ERG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ERG _cell.length_a 139.916 _cell.length_b 139.916 _cell.length_c 103.472 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ERG _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-2/3 1 0 0 0 -1 0 0 0 -1 0 0 -68.981333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 5ERG _atom_sites.fract_transf_matrix[1][1] 0.007147 _atom_sites.fract_transf_matrix[1][2] 0.004126 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008253 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009664 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SAM B 1 401 1 SAM SAM . D 4 HOH A 1 501 161 HOH HOH . D 4 HOH A 2 502 49 HOH HOH . D 4 HOH A 3 503 91 HOH HOH . D 4 HOH A 4 504 205 HOH HOH . D 4 HOH A 5 505 42 HOH HOH . D 4 HOH A 6 506 128 HOH HOH . D 4 HOH A 7 507 118 HOH HOH . D 4 HOH A 8 508 57 HOH HOH . D 4 HOH A 9 509 17 HOH HOH . D 4 HOH A 10 510 20 HOH HOH . D 4 HOH A 11 511 46 HOH HOH . D 4 HOH A 12 512 63 HOH HOH . D 4 HOH A 13 513 5 HOH HOH . D 4 HOH A 14 514 110 HOH HOH . D 4 HOH A 15 515 192 HOH HOH . D 4 HOH A 16 516 34 HOH HOH . D 4 HOH A 17 517 67 HOH HOH . D 4 HOH A 18 518 9 HOH HOH . D 4 HOH A 19 519 187 HOH HOH . D 4 HOH A 20 520 96 HOH HOH . D 4 HOH A 21 521 200 HOH HOH . D 4 HOH A 22 522 44 HOH HOH . D 4 HOH A 23 523 15 HOH HOH . D 4 HOH A 24 524 55 HOH HOH . D 4 HOH A 25 525 12 HOH HOH . D 4 HOH A 26 526 77 HOH HOH . D 4 HOH A 27 527 114 HOH HOH . D 4 HOH A 28 528 13 HOH HOH . D 4 HOH A 29 529 169 HOH HOH . D 4 HOH A 30 530 52 HOH HOH . D 4 HOH A 31 531 112 HOH HOH . D 4 HOH A 32 532 173 HOH HOH . D 4 HOH A 33 533 2 HOH HOH . D 4 HOH A 34 534 56 HOH HOH . D 4 HOH A 35 535 23 HOH HOH . D 4 HOH A 36 536 130 HOH HOH . D 4 HOH A 37 537 197 HOH HOH . D 4 HOH A 38 538 79 HOH HOH . D 4 HOH A 39 539 51 HOH HOH . D 4 HOH A 40 540 70 HOH HOH . D 4 HOH A 41 541 35 HOH HOH . D 4 HOH A 42 542 156 HOH HOH . D 4 HOH A 43 543 47 HOH HOH . D 4 HOH A 44 544 129 HOH HOH . D 4 HOH A 45 545 40 HOH HOH . D 4 HOH A 46 546 29 HOH HOH . D 4 HOH A 47 547 14 HOH HOH . D 4 HOH A 48 548 8 HOH HOH . D 4 HOH A 49 549 131 HOH HOH . D 4 HOH A 50 550 87 HOH HOH . D 4 HOH A 51 551 193 HOH HOH . D 4 HOH A 52 552 58 HOH HOH . D 4 HOH A 53 553 141 HOH HOH . D 4 HOH A 54 554 159 HOH HOH . D 4 HOH A 55 555 41 HOH HOH . D 4 HOH A 56 556 86 HOH HOH . D 4 HOH A 57 557 162 HOH HOH . D 4 HOH A 58 558 74 HOH HOH . D 4 HOH A 59 559 94 HOH HOH . D 4 HOH A 60 560 65 HOH HOH . D 4 HOH A 61 561 31 HOH HOH . D 4 HOH A 62 562 38 HOH HOH . D 4 HOH A 63 563 22 HOH HOH . D 4 HOH A 64 564 172 HOH HOH . D 4 HOH A 65 565 157 HOH HOH . D 4 HOH A 66 566 76 HOH HOH . D 4 HOH A 67 567 73 HOH HOH . D 4 HOH A 68 568 61 HOH HOH . D 4 HOH A 69 569 108 HOH HOH . D 4 HOH A 70 570 136 HOH HOH . D 4 HOH A 71 571 132 HOH HOH . D 4 HOH A 72 572 69 HOH HOH . D 4 HOH A 73 573 151 HOH HOH . D 4 HOH A 74 574 72 HOH HOH . D 4 HOH A 75 575 127 HOH HOH . D 4 HOH A 76 576 121 HOH HOH . D 4 HOH A 77 577 143 HOH HOH . D 4 HOH A 78 578 166 HOH HOH . D 4 HOH A 79 579 212 HOH HOH . D 4 HOH A 80 580 116 HOH HOH . D 4 HOH A 81 581 177 HOH HOH . D 4 HOH A 82 582 182 HOH HOH . D 4 HOH A 83 583 174 HOH HOH . D 4 HOH A 84 584 206 HOH HOH . D 4 HOH A 85 585 168 HOH HOH . D 4 HOH A 86 586 78 HOH HOH . D 4 HOH A 87 587 179 HOH HOH . D 4 HOH A 88 588 163 HOH HOH . D 4 HOH A 89 589 135 HOH HOH . E 4 HOH B 1 501 160 HOH HOH . E 4 HOH B 2 502 170 HOH HOH . E 4 HOH B 3 503 209 HOH HOH . E 4 HOH B 4 504 111 HOH HOH . E 4 HOH B 5 505 50 HOH HOH . E 4 HOH B 6 506 6 HOH HOH . E 4 HOH B 7 507 120 HOH HOH . E 4 HOH B 8 508 202 HOH HOH . E 4 HOH B 9 509 145 HOH HOH . E 4 HOH B 10 510 199 HOH HOH . E 4 HOH B 11 511 82 HOH HOH . E 4 HOH B 12 512 53 HOH HOH . E 4 HOH B 13 513 66 HOH HOH . E 4 HOH B 14 514 45 HOH HOH . E 4 HOH B 15 515 133 HOH HOH . E 4 HOH B 16 516 104 HOH HOH . E 4 HOH B 17 517 150 HOH HOH . E 4 HOH B 18 518 19 HOH HOH . E 4 HOH B 19 519 189 HOH HOH . E 4 HOH B 20 520 146 HOH HOH . E 4 HOH B 21 521 7 HOH HOH . E 4 HOH B 22 522 107 HOH HOH . E 4 HOH B 23 523 21 HOH HOH . E 4 HOH B 24 524 28 HOH HOH . E 4 HOH B 25 525 62 HOH HOH . E 4 HOH B 26 526 36 HOH HOH . E 4 HOH B 27 527 119 HOH HOH . E 4 HOH B 28 528 27 HOH HOH . E 4 HOH B 29 529 196 HOH HOH . E 4 HOH B 30 530 30 HOH HOH . E 4 HOH B 31 531 18 HOH HOH . E 4 HOH B 32 532 10 HOH HOH . E 4 HOH B 33 533 134 HOH HOH . E 4 HOH B 34 534 155 HOH HOH . E 4 HOH B 35 535 122 HOH HOH . E 4 HOH B 36 536 148 HOH HOH . E 4 HOH B 37 537 117 HOH HOH . E 4 HOH B 38 538 147 HOH HOH . E 4 HOH B 39 539 48 HOH HOH . E 4 HOH B 40 540 89 HOH HOH . E 4 HOH B 41 541 26 HOH HOH . E 4 HOH B 42 542 137 HOH HOH . E 4 HOH B 43 543 180 HOH HOH . E 4 HOH B 44 544 195 HOH HOH . E 4 HOH B 45 545 43 HOH HOH . E 4 HOH B 46 546 105 HOH HOH . E 4 HOH B 47 547 98 HOH HOH . E 4 HOH B 48 548 1 HOH HOH . E 4 HOH B 49 549 106 HOH HOH . E 4 HOH B 50 550 37 HOH HOH . E 4 HOH B 51 551 175 HOH HOH . E 4 HOH B 52 552 158 HOH HOH . E 4 HOH B 53 553 84 HOH HOH . E 4 HOH B 54 554 211 HOH HOH . E 4 HOH B 55 555 81 HOH HOH . E 4 HOH B 56 556 103 HOH HOH . E 4 HOH B 57 557 190 HOH HOH . E 4 HOH B 58 558 207 HOH HOH . E 4 HOH B 59 559 125 HOH HOH . E 4 HOH B 60 560 138 HOH HOH . E 4 HOH B 61 561 39 HOH HOH . E 4 HOH B 62 562 68 HOH HOH . E 4 HOH B 63 563 59 HOH HOH . E 4 HOH B 64 564 171 HOH HOH . E 4 HOH B 65 565 24 HOH HOH . E 4 HOH B 66 566 100 HOH HOH . E 4 HOH B 67 567 201 HOH HOH . E 4 HOH B 68 568 4 HOH HOH . E 4 HOH B 69 569 3 HOH HOH . E 4 HOH B 70 570 60 HOH HOH . E 4 HOH B 71 571 186 HOH HOH . E 4 HOH B 72 572 16 HOH HOH . E 4 HOH B 73 573 11 HOH HOH . E 4 HOH B 74 574 71 HOH HOH . E 4 HOH B 75 575 88 HOH HOH . E 4 HOH B 76 576 109 HOH HOH . E 4 HOH B 77 577 25 HOH HOH . E 4 HOH B 78 578 203 HOH HOH . E 4 HOH B 79 579 75 HOH HOH . E 4 HOH B 80 580 154 HOH HOH . E 4 HOH B 81 581 102 HOH HOH . E 4 HOH B 82 582 208 HOH HOH . E 4 HOH B 83 583 178 HOH HOH . E 4 HOH B 84 584 165 HOH HOH . E 4 HOH B 85 585 97 HOH HOH . E 4 HOH B 86 586 99 HOH HOH . E 4 HOH B 87 587 126 HOH HOH . E 4 HOH B 88 588 176 HOH HOH . E 4 HOH B 89 589 204 HOH HOH . E 4 HOH B 90 590 153 HOH HOH . E 4 HOH B 91 591 33 HOH HOH . E 4 HOH B 92 592 152 HOH HOH . E 4 HOH B 93 593 185 HOH HOH . E 4 HOH B 94 594 80 HOH HOH . E 4 HOH B 95 595 113 HOH HOH . E 4 HOH B 96 596 139 HOH HOH . E 4 HOH B 97 597 164 HOH HOH . E 4 HOH B 98 598 83 HOH HOH . E 4 HOH B 99 599 123 HOH HOH . E 4 HOH B 100 600 167 HOH HOH . E 4 HOH B 101 601 184 HOH HOH . E 4 HOH B 102 602 149 HOH HOH . E 4 HOH B 103 603 188 HOH HOH . E 4 HOH B 104 604 181 HOH HOH . E 4 HOH B 105 605 213 HOH HOH . E 4 HOH B 106 606 140 HOH HOH . E 4 HOH B 107 607 101 HOH HOH . E 4 HOH B 108 608 90 HOH HOH . E 4 HOH B 109 609 198 HOH HOH . E 4 HOH B 110 610 194 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . C 3 79.003 -1.258 -13.358 1 54.37 ? N SAM 401 B 1 HETATM 2 C CA SAM . . . C 3 78.786 -0.204 -12.411 1 56.55 ? CA SAM 401 B 1 HETATM 3 C C SAM . . . C 3 77.309 0.006 -12.263 1 55.25 ? C SAM 401 B 1 HETATM 4 O O SAM . . . C 3 76.877 0.798 -11.432 1 54.42 ? O SAM 401 B 1 HETATM 5 O OXT SAM . . . C 3 76.542 -0.631 -12.965 1 53.48 ? OXT SAM 401 B 1 HETATM 6 C CB SAM . . . C 3 79.514 1.049 -12.89 1 58.83 ? CB SAM 401 B 1 HETATM 7 C CG SAM . . . C 3 81.03 0.891 -12.894 1 59.26 ? CG SAM 401 B 1 HETATM 8 S SD SAM . . . C 3 81.827 2.311 -13.219 1 86.08 ? SD SAM 401 B 1 HETATM 9 C CE SAM . . . C 3 81.408 2.804 -14.719 1 68.51 ? CE SAM 401 B 1 HETATM 10 C C5' SAM . . . C 3 83.466 2.078 -13.238 1 61.76 ? C5' SAM 401 B 1 HETATM 11 C C4' SAM . . . C 3 84.059 1.885 -11.851 1 59.72 ? C4' SAM 401 B 1 HETATM 12 O O4' SAM . . . C 3 85.256 1.138 -11.949 1 57.74 ? O4' SAM 401 B 1 HETATM 13 C C3' SAM . . . C 3 84.466 3.187 -11.222 1 60.42 ? C3' SAM 401 B 1 HETATM 14 O O3' SAM . . . C 3 83.834 3.287 -9.979 1 59.22 ? O3' SAM 401 B 1 HETATM 15 C C2' SAM . . . C 3 85.95 3.077 -10.981 1 60.42 ? C2' SAM 401 B 1 HETATM 16 O O2' SAM . . . C 3 86.261 3.703 -9.751 1 57.21 ? O2' SAM 401 B 1 HETATM 17 C C1' SAM . . . C 3 86.165 1.581 -10.965 1 60.57 ? C1' SAM 401 B 1 HETATM 18 N N9 SAM . . . C 3 87.53 1.159 -11.336 1 59.34 ? N9 SAM 401 B 1 HETATM 19 C C8 SAM . . . C 3 88.288 1.717 -12.269 1 52.76 ? C8 SAM 401 B 1 HETATM 20 N N7 SAM . . . C 3 89.46 1.093 -12.36 1 56.76 ? N7 SAM 401 B 1 HETATM 21 C C5 SAM . . . C 3 89.478 0.115 -11.467 1 58.07 ? C5 SAM 401 B 1 HETATM 22 C C6 SAM . . . C 3 90.436 -0.928 -11.046 1 55.32 ? C6 SAM 401 B 1 HETATM 23 N N6 SAM . . . C 3 91.631 -1.011 -11.645 1 54.17 ? N6 SAM 401 B 1 HETATM 24 N N1 SAM . . . C 3 90.077 -1.77 -10.074 1 48.74 ? N1 SAM 401 B 1 HETATM 25 C C2 SAM . . . C 3 88.885 -1.664 -9.507 1 49.96 ? C2 SAM 401 B 1 HETATM 26 N N3 SAM . . . C 3 87.972 -0.746 -9.834 1 54.75 ? N3 SAM 401 B 1 HETATM 27 C C4 SAM . . . C 3 88.2 0.161 -10.792 1 57.65 ? C4 SAM 401 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #