data_5ERM # _model_server_result.job_id JvmPtKjB4xAD_Zu0YnuzHw _model_server_result.datetime_utc '2024-11-06 01:34:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5erm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":405}' # _entry.id 5ERM # _exptl.entry_id 5ERM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ERM _cell.length_a 143.295 _cell.length_b 143.295 _cell.length_c 118.261 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ERM _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1 B,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 111 A ASP 92 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc2 A OD1 ASP 111 A ASP 92 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc3 A OD1 ASP 115 A ASP 96 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc4 A OD2 ASP 115 A ASP 96 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc5 A OD2 ASP 115 A ASP 96 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc6 A OD1 ASN 251 A ASN 232 1_555 G MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc7 A OG SER 255 A SER 236 1_555 G MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc8 A OE2 GLU 259 A GLU 240 1_555 G MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc9 C O3 210 . A 210 401 1_555 E MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc10 C O3 210 . A 210 401 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.719 ? metalc ? metalc11 C O10 210 . A 210 401 1_555 F MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc12 C O5 210 . A 210 401 1_555 G MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc13 C O9 210 . A 210 401 1_555 G MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc14 E MG MG . A MG 403 1_555 M O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc15 E MG MG . A MG 403 1_555 M O HOH . A HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc16 E MG MG . A MG 403 1_555 M O HOH . A HOH 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc17 F MG MG . A MG 404 1_555 M O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc18 F MG MG . A MG 404 1_555 M O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc19 G MG MG . A MG 405 1_555 M O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc20 B OD1 ASP 111 B ASP 92 1_555 H MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc21 B OD2 ASP 111 B ASP 92 1_555 I MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc22 B OD2 ASP 115 B ASP 96 1_555 H MG MG . B MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc23 B OD1 ASP 115 B ASP 96 1_555 I MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc24 B OD2 ASP 115 B ASP 96 1_555 I MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc25 B OD1 ASN 251 B ASN 232 1_555 J MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc26 B OG SER 255 B SER 236 1_555 J MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc27 B OE2 GLU 259 B GLU 240 1_555 J MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc28 H MG MG . B MG 701 1_555 K O9 210 . B 210 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc29 H MG MG . B MG 701 1_555 K O5 210 . B 210 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc30 H MG MG . B MG 701 1_555 N O HOH . B HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.842 ? metalc ? metalc31 H MG MG . B MG 701 1_555 N O HOH . B HOH 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc32 I MG MG . B MG 702 1_555 K O5 210 . B 210 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc33 I MG MG . B MG 702 1_555 N O HOH . B HOH 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc34 I MG MG . B MG 702 1_555 N O HOH . B HOH 862 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.763 ? metalc ? metalc35 I MG MG . B MG 702 1_555 N O HOH . B HOH 870 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc36 J MG MG . B MG 703 1_555 K O2 210 . B 210 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.733 ? metalc ? metalc37 J MG MG . B MG 703 1_555 K O10 210 . B 210 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc38 J MG MG . B MG 703 1_555 N O HOH . B HOH 832 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5ERM _atom_sites.fract_transf_matrix[1][1] 0.006979 _atom_sites.fract_transf_matrix[1][2] 0.004029 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008058 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008456 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 210 A 1 401 704 210 210 . D 3 CL A 1 402 705 CL CL . E 4 MG A 1 403 701 MG MG . F 4 MG A 1 404 702 MG MG . G 4 MG A 1 405 703 MG MG . H 4 MG B 1 701 701 MG MG . I 4 MG B 1 702 702 MG MG . J 4 MG B 1 703 703 MG MG . K 2 210 B 1 704 704 210 210 . L 3 CL B 1 705 705 CL CL . M 5 HOH A 1 501 172 HOH HOH . M 5 HOH A 2 502 92 HOH HOH . M 5 HOH A 3 503 98 HOH HOH . M 5 HOH A 4 504 191 HOH HOH . M 5 HOH A 5 505 182 HOH HOH . M 5 HOH A 6 506 132 HOH HOH . M 5 HOH A 7 507 127 HOH HOH . M 5 HOH A 8 508 108 HOH HOH . M 5 HOH A 9 509 151 HOH HOH . M 5 HOH A 10 510 157 HOH HOH . M 5 HOH A 11 511 25 HOH HOH . M 5 HOH A 12 512 94 HOH HOH . M 5 HOH A 13 513 102 HOH HOH . M 5 HOH A 14 514 8 HOH HOH . M 5 HOH A 15 515 83 HOH HOH . M 5 HOH A 16 516 201 HOH HOH . M 5 HOH A 17 517 22 HOH HOH . M 5 HOH A 18 518 213 HOH HOH . M 5 HOH A 19 519 126 HOH HOH . M 5 HOH A 20 520 24 HOH HOH . M 5 HOH A 21 521 131 HOH HOH . M 5 HOH A 22 522 142 HOH HOH . M 5 HOH A 23 523 159 HOH HOH . M 5 HOH A 24 524 86 HOH HOH . M 5 HOH A 25 525 206 HOH HOH . M 5 HOH A 26 526 153 HOH HOH . M 5 HOH A 27 527 80 HOH HOH . M 5 HOH A 28 528 27 HOH HOH . M 5 HOH A 29 529 212 HOH HOH . M 5 HOH A 30 530 23 HOH HOH . M 5 HOH A 31 531 129 HOH HOH . M 5 HOH A 32 532 104 HOH HOH . M 5 HOH A 33 533 136 HOH HOH . M 5 HOH A 34 534 174 HOH HOH . M 5 HOH A 35 535 186 HOH HOH . M 5 HOH A 36 536 90 HOH HOH . M 5 HOH A 37 537 88 HOH HOH . M 5 HOH A 38 538 84 HOH HOH . M 5 HOH A 39 539 81 HOH HOH . M 5 HOH A 40 540 139 HOH HOH . M 5 HOH A 41 541 87 HOH HOH . M 5 HOH A 42 542 117 HOH HOH . M 5 HOH A 43 543 123 HOH HOH . M 5 HOH A 44 544 162 HOH HOH . M 5 HOH A 45 545 200 HOH HOH . M 5 HOH A 46 546 154 HOH HOH . M 5 HOH A 47 547 7 HOH HOH . M 5 HOH A 48 548 137 HOH HOH . M 5 HOH A 49 549 156 HOH HOH . M 5 HOH A 50 550 133 HOH HOH . M 5 HOH A 51 551 141 HOH HOH . M 5 HOH A 52 552 210 HOH HOH . M 5 HOH A 53 553 28 HOH HOH . M 5 HOH A 54 554 155 HOH HOH . M 5 HOH A 55 555 95 HOH HOH . M 5 HOH A 56 556 93 HOH HOH . M 5 HOH A 57 557 82 HOH HOH . M 5 HOH A 58 558 26 HOH HOH . M 5 HOH A 59 559 149 HOH HOH . M 5 HOH A 60 560 187 HOH HOH . M 5 HOH A 61 561 144 HOH HOH . M 5 HOH A 62 562 97 HOH HOH . M 5 HOH A 63 563 150 HOH HOH . M 5 HOH A 64 564 145 HOH HOH . M 5 HOH A 65 565 44 HOH HOH . M 5 HOH A 66 566 29 HOH HOH . M 5 HOH A 67 567 147 HOH HOH . M 5 HOH A 68 568 134 HOH HOH . M 5 HOH A 69 569 138 HOH HOH . M 5 HOH A 70 570 73 HOH HOH . M 5 HOH A 71 571 5 HOH HOH . M 5 HOH A 72 572 96 HOH HOH . M 5 HOH A 73 573 146 HOH HOH . M 5 HOH A 74 574 89 HOH HOH . M 5 HOH A 75 575 143 HOH HOH . M 5 HOH A 76 576 9 HOH HOH . M 5 HOH A 77 577 188 HOH HOH . M 5 HOH A 78 578 205 HOH HOH . M 5 HOH A 79 579 85 HOH HOH . M 5 HOH A 80 580 152 HOH HOH . M 5 HOH A 81 581 140 HOH HOH . M 5 HOH A 82 582 6 HOH HOH . N 5 HOH B 1 801 181 HOH HOH . N 5 HOH B 2 802 79 HOH HOH . N 5 HOH B 3 803 14 HOH HOH . N 5 HOH B 4 804 31 HOH HOH . N 5 HOH B 5 805 161 HOH HOH . N 5 HOH B 6 806 39 HOH HOH . N 5 HOH B 7 807 43 HOH HOH . N 5 HOH B 8 808 193 HOH HOH . N 5 HOH B 9 809 71 HOH HOH . N 5 HOH B 10 810 116 HOH HOH . N 5 HOH B 11 811 170 HOH HOH . N 5 HOH B 12 812 69 HOH HOH . N 5 HOH B 13 813 148 HOH HOH . N 5 HOH B 14 814 60 HOH HOH . N 5 HOH B 15 815 115 HOH HOH . N 5 HOH B 16 816 101 HOH HOH . N 5 HOH B 17 817 52 HOH HOH . N 5 HOH B 18 818 30 HOH HOH . N 5 HOH B 19 819 41 HOH HOH . N 5 HOH B 20 820 169 HOH HOH . N 5 HOH B 21 821 113 HOH HOH . N 5 HOH B 22 822 67 HOH HOH . N 5 HOH B 23 823 190 HOH HOH . N 5 HOH B 24 824 197 HOH HOH . N 5 HOH B 25 825 66 HOH HOH . N 5 HOH B 26 826 53 HOH HOH . N 5 HOH B 27 827 183 HOH HOH . N 5 HOH B 28 828 45 HOH HOH . N 5 HOH B 29 829 72 HOH HOH . N 5 HOH B 30 830 65 HOH HOH . N 5 HOH B 31 831 42 HOH HOH . N 5 HOH B 32 832 109 HOH HOH . N 5 HOH B 33 833 163 HOH HOH . N 5 HOH B 34 834 208 HOH HOH . N 5 HOH B 35 835 36 HOH HOH . N 5 HOH B 36 836 209 HOH HOH . N 5 HOH B 37 837 38 HOH HOH . N 5 HOH B 38 838 211 HOH HOH . N 5 HOH B 39 839 21 HOH HOH . N 5 HOH B 40 840 58 HOH HOH . N 5 HOH B 41 841 177 HOH HOH . N 5 HOH B 42 842 207 HOH HOH . N 5 HOH B 43 843 70 HOH HOH . N 5 HOH B 44 844 185 HOH HOH . N 5 HOH B 45 845 168 HOH HOH . N 5 HOH B 46 846 37 HOH HOH . N 5 HOH B 47 847 203 HOH HOH . N 5 HOH B 48 848 125 HOH HOH . N 5 HOH B 49 849 124 HOH HOH . N 5 HOH B 50 850 175 HOH HOH . N 5 HOH B 51 851 17 HOH HOH . N 5 HOH B 52 852 57 HOH HOH . N 5 HOH B 53 853 1 HOH HOH . N 5 HOH B 54 854 56 HOH HOH . N 5 HOH B 55 855 63 HOH HOH . N 5 HOH B 56 856 33 HOH HOH . N 5 HOH B 57 857 178 HOH HOH . N 5 HOH B 58 858 18 HOH HOH . N 5 HOH B 59 859 54 HOH HOH . N 5 HOH B 60 860 50 HOH HOH . N 5 HOH B 61 861 166 HOH HOH . N 5 HOH B 62 862 171 HOH HOH . N 5 HOH B 63 863 11 HOH HOH . N 5 HOH B 64 864 51 HOH HOH . N 5 HOH B 65 865 59 HOH HOH . N 5 HOH B 66 866 130 HOH HOH . N 5 HOH B 67 867 160 HOH HOH . N 5 HOH B 68 868 167 HOH HOH . N 5 HOH B 69 869 77 HOH HOH . N 5 HOH B 70 870 110 HOH HOH . N 5 HOH B 71 871 78 HOH HOH . N 5 HOH B 72 872 202 HOH HOH . N 5 HOH B 73 873 32 HOH HOH . N 5 HOH B 74 874 49 HOH HOH . N 5 HOH B 75 875 192 HOH HOH . N 5 HOH B 76 876 35 HOH HOH . N 5 HOH B 77 877 55 HOH HOH . N 5 HOH B 78 878 196 HOH HOH . N 5 HOH B 79 879 40 HOH HOH . N 5 HOH B 80 880 46 HOH HOH . N 5 HOH B 81 881 20 HOH HOH . N 5 HOH B 82 882 179 HOH HOH . N 5 HOH B 83 883 158 HOH HOH . N 5 HOH B 84 884 16 HOH HOH . N 5 HOH B 85 885 164 HOH HOH . N 5 HOH B 86 886 68 HOH HOH . N 5 HOH B 87 887 34 HOH HOH . N 5 HOH B 88 888 128 HOH HOH . N 5 HOH B 89 889 189 HOH HOH . N 5 HOH B 90 890 61 HOH HOH . N 5 HOH B 91 891 176 HOH HOH . N 5 HOH B 92 892 62 HOH HOH . N 5 HOH B 93 893 204 HOH HOH . N 5 HOH B 94 894 19 HOH HOH . N 5 HOH B 95 895 184 HOH HOH . N 5 HOH B 96 896 195 HOH HOH . N 5 HOH B 97 897 74 HOH HOH . N 5 HOH B 98 898 48 HOH HOH . N 5 HOH B 99 899 180 HOH HOH . N 5 HOH B 100 900 198 HOH HOH . N 5 HOH B 101 901 194 HOH HOH . N 5 HOH B 102 902 165 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 4 _atom_site.Cartn_x -43.905 _atom_site.Cartn_y 15.355 _atom_site.Cartn_z -1.408 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.71 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 405 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #