data_5ES8 # _model_server_result.job_id ECPIBk3GzvUDwDY1u2n04g _model_server_result.datetime_utc '2024-10-12 11:18:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5es8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 5ES8 # _exptl.entry_id 5ES8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 440.429 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(3~{R})-4-[[3-[2-[[(2~{S})-2-azanyl-3-methyl-butanoyl]amino]ethylamino]-3-oxidanylidene-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] dihydrogen phosphate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.77 _cell.angle_gamma 90 _cell.entry_id 5ES8 _cell.length_a 76.55 _cell.length_b 101.05 _cell.length_c 138.74 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ES8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 729 A SER 729 1_555 C P02 5S4 . A 5S4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.571 ? covale ? covale2 B OG SER 729 B SER 729 1_555 D P02 5S4 . B 5S4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.582 ? # _chem_comp.formula 'C16 H33 N4 O8 P' _chem_comp.formula_weight 440.429 _chem_comp.id 5S4 _chem_comp.mon_nstd_flag . _chem_comp.name '[(3~{R})-4-[[3-[2-[[(2~{S})-2-azanyl-3-methyl-butanoyl]amino]ethylamino]-3-oxidanylidene-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] dihydrogen phosphate' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O29 P02 5S4 sing 1 n n P02 O03 5S4 sing 2 n n P02 O01 5S4 doub 3 n n O03 C04 5S4 sing 4 n n C04 C05 5S4 sing 5 n n O09 C08 5S4 sing 6 n n C06 C05 5S4 sing 7 n n O27 C10 5S4 doub 8 n n C05 C08 5S4 sing 9 n n C05 C07 5S4 sing 10 n n C08 C10 5S4 sing 11 n n C10 N11 5S4 sing 12 n n N11 C12 5S4 sing 13 n n C13 C12 5S4 sing 14 n n C13 C14 5S4 sing 15 n n O26 C14 5S4 doub 16 n n C14 N15 5S4 sing 17 n n N15 C16 5S4 sing 18 n n C16 C17 5S4 sing 19 n n C17 N18 5S4 sing 20 n n N18 C19 5S4 sing 21 n n N24 C20 5S4 sing 22 n n C20 C19 5S4 sing 23 n n C20 C21 5S4 sing 24 n n C19 O25 5S4 doub 25 n n C22 C21 5S4 sing 26 n n C21 C23 5S4 sing 27 n n C13 H1 5S4 sing 28 n n C13 H2 5S4 sing 29 n n C17 H3 5S4 sing 30 n n C17 H4 5S4 sing 31 n n C20 H5 5S4 sing 32 n n C21 H6 5S4 sing 33 n n C22 H7 5S4 sing 34 n n C22 H8 5S4 sing 35 n n C22 H9 5S4 sing 36 n n C04 H11 5S4 sing 37 n n C08 H19 5S4 sing 38 n n O09 H20 5S4 sing 39 n n N11 H21 5S4 sing 40 n n C12 H22 5S4 sing 41 n n C12 H23 5S4 sing 42 n n N15 H24 5S4 sing 43 n n C16 H25 5S4 sing 44 n n C16 H26 5S4 sing 45 n n N18 H27 5S4 sing 46 n n C23 H28 5S4 sing 47 n n C23 H29 5S4 sing 48 n n C23 H30 5S4 sing 49 n n N24 H31 5S4 sing 50 n n N24 H32 5S4 sing 51 n n P02 OP3 5S4 sing 52 n n C04 H10 5S4 sing 53 n n C06 H12 5S4 sing 54 n n C06 H13 5S4 sing 55 n n C06 H14 5S4 sing 56 n n C07 H15 5S4 sing 57 n n C07 H16 5S4 sing 58 n n C07 H17 5S4 sing 59 n n O29 H18 5S4 sing 60 n n OP3 H33 5S4 sing 61 n n # _atom_sites.entry_id 5ES8 _atom_sites.fract_transf_matrix[1][1] 0.013063 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000404 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009896 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007211 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5S4 A 1 801 772 5S4 OOO . D 2 5S4 B 1 801 772 5S4 OOO . E 3 HOH A 1 901 4 HOH HOH . E 3 HOH A 2 902 3 HOH HOH . E 3 HOH A 3 903 11 HOH HOH . E 3 HOH A 4 904 14 HOH HOH . E 3 HOH A 5 905 18 HOH HOH . E 3 HOH A 6 906 6 HOH HOH . E 3 HOH A 7 907 17 HOH HOH . E 3 HOH A 8 908 8 HOH HOH . F 3 HOH B 1 901 5 HOH HOH . F 3 HOH B 2 902 7 HOH HOH . F 3 HOH B 3 903 12 HOH HOH . F 3 HOH B 4 904 1 HOH HOH . F 3 HOH B 5 905 19 HOH HOH . F 3 HOH B 6 906 2 HOH HOH . F 3 HOH B 7 907 13 HOH HOH . F 3 HOH B 8 908 16 HOH HOH . F 3 HOH B 9 909 9 HOH HOH . F 3 HOH B 10 910 10 HOH HOH . F 3 HOH B 11 911 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 5S4 . . . C 2 -117.327 111.872 27.746 1 73.81 ? C10 5S4 801 A 1 HETATM 2 O O27 5S4 . . . C 2 -118.08 111.53 26.854 1 88.47 ? O27 5S4 801 A 1 HETATM 3 C C08 5S4 . . . C 2 -116.432 113.058 27.507 1 92.98 ? C08 5S4 801 A 1 HETATM 4 O O09 5S4 . . . C 2 -116.822 113.736 26.34 1 80.52 ? O09 5S4 801 A 1 HETATM 5 C C05 5S4 . . . C 2 -115.003 112.589 27.231 1 88.68 ? C05 5S4 801 A 1 HETATM 6 C C04 5S4 . . . C 2 -115.118 111.749 25.968 1 94.1 ? C04 5S4 801 A 1 HETATM 7 C C06 5S4 . . . C 2 -114.102 113.802 26.893 1 80.75 ? C06 5S4 801 A 1 HETATM 8 C C07 5S4 . . . C 2 -114.407 111.839 28.414 1 78.1 ? C07 5S4 801 A 1 HETATM 9 P P02 5S4 . . . C 2 -113.072 110.501 25.317 1 75.7 ? P02 5S4 801 A 1 HETATM 10 O O03 5S4 . . . C 2 -113.873 111.854 25.306 1 83.14 ? O03 5S4 801 A 1 HETATM 11 O O01 5S4 . . . C 2 -113.236 109.793 26.641 1 81.24 ? O01 5S4 801 A 1 HETATM 12 O O29 5S4 . . . C 2 -113.586 109.625 24.214 1 96.67 -1 O29 5S4 801 A 1 HETATM 13 N N11 5S4 . . . C 2 -117.283 111.171 29.031 1 72.82 ? N11 5S4 801 A 1 HETATM 14 C C12 5S4 . . . C 2 -118.086 110.034 29.409 1 72.61 ? C12 5S4 801 A 1 HETATM 15 C C13 5S4 . . . C 2 -119.551 110.233 29.002 1 73.83 ? C13 5S4 801 A 1 HETATM 16 C C14 5S4 . . . C 2 -120.699 109.596 29.842 1 71.84 ? C14 5S4 801 A 1 HETATM 17 O O26 5S4 . . . C 2 -121.845 109.9 29.567 1 84.83 ? O26 5S4 801 A 1 HETATM 18 N N18 5S4 . . . C 2 -121.772 108.541 34.083 1 89.88 ? N18 5S4 801 A 1 HETATM 19 C C17 5S4 . . . C 2 -121.969 109.131 32.773 1 73.38 ? C17 5S4 801 A 1 HETATM 20 C C16 5S4 . . . C 2 -121.549 108.127 31.687 1 71.07 ? C16 5S4 801 A 1 HETATM 21 N N15 5S4 . . . C 2 -120.421 108.679 30.92 1 69.73 ? N15 5S4 801 A 1 HETATM 22 N N24 5S4 . . . C 2 -124.977 108.6 34.338 1 95.06 ? N24 5S4 801 A 1 HETATM 23 C C20 5S4 . . . C 2 -123.993 109.529 34.725 1 92.16 ? C20 5S4 801 A 1 HETATM 24 C C19 5S4 . . . C 2 -122.766 108.722 35.091 1 91.27 ? C19 5S4 801 A 1 HETATM 25 O O25 5S4 . . . C 2 -122.656 108.231 36.187 1 119.8 ? O25 5S4 801 A 1 HETATM 26 C C21 5S4 . . . C 2 -124.545 110.314 35.891 1 85.81 ? C21 5S4 801 A 1 HETATM 27 C C22 5S4 . . . C 2 -125.627 111.202 35.343 1 76.55 ? C22 5S4 801 A 1 HETATM 28 C C23 5S4 . . . C 2 -123.488 111.191 36.58 1 81.52 ? C23 5S4 801 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #