data_5ES8 # _model_server_result.job_id VLpa4YegTbAVFNj06sI6xQ _model_server_result.datetime_utc '2024-10-12 11:14:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5es8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":801}' # _entry.id 5ES8 # _exptl.entry_id 5ES8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 440.429 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(3~{R})-4-[[3-[2-[[(2~{S})-2-azanyl-3-methyl-butanoyl]amino]ethylamino]-3-oxidanylidene-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] dihydrogen phosphate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.77 _cell.angle_gamma 90 _cell.entry_id 5ES8 _cell.length_a 76.55 _cell.length_b 101.05 _cell.length_c 138.74 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ES8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 729 A SER 729 1_555 C P02 5S4 . A 5S4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.571 ? covale ? covale2 B OG SER 729 B SER 729 1_555 D P02 5S4 . B 5S4 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.582 ? # _chem_comp.formula 'C16 H33 N4 O8 P' _chem_comp.formula_weight 440.429 _chem_comp.id 5S4 _chem_comp.mon_nstd_flag . _chem_comp.name '[(3~{R})-4-[[3-[2-[[(2~{S})-2-azanyl-3-methyl-butanoyl]amino]ethylamino]-3-oxidanylidene-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] dihydrogen phosphate' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O29 P02 5S4 sing 1 n n P02 O03 5S4 sing 2 n n P02 O01 5S4 doub 3 n n O03 C04 5S4 sing 4 n n C04 C05 5S4 sing 5 n n O09 C08 5S4 sing 6 n n C06 C05 5S4 sing 7 n n O27 C10 5S4 doub 8 n n C05 C08 5S4 sing 9 n n C05 C07 5S4 sing 10 n n C08 C10 5S4 sing 11 n n C10 N11 5S4 sing 12 n n N11 C12 5S4 sing 13 n n C13 C12 5S4 sing 14 n n C13 C14 5S4 sing 15 n n O26 C14 5S4 doub 16 n n C14 N15 5S4 sing 17 n n N15 C16 5S4 sing 18 n n C16 C17 5S4 sing 19 n n C17 N18 5S4 sing 20 n n N18 C19 5S4 sing 21 n n N24 C20 5S4 sing 22 n n C20 C19 5S4 sing 23 n n C20 C21 5S4 sing 24 n n C19 O25 5S4 doub 25 n n C22 C21 5S4 sing 26 n n C21 C23 5S4 sing 27 n n C13 H1 5S4 sing 28 n n C13 H2 5S4 sing 29 n n C17 H3 5S4 sing 30 n n C17 H4 5S4 sing 31 n n C20 H5 5S4 sing 32 n n C21 H6 5S4 sing 33 n n C22 H7 5S4 sing 34 n n C22 H8 5S4 sing 35 n n C22 H9 5S4 sing 36 n n C04 H11 5S4 sing 37 n n C08 H19 5S4 sing 38 n n O09 H20 5S4 sing 39 n n N11 H21 5S4 sing 40 n n C12 H22 5S4 sing 41 n n C12 H23 5S4 sing 42 n n N15 H24 5S4 sing 43 n n C16 H25 5S4 sing 44 n n C16 H26 5S4 sing 45 n n N18 H27 5S4 sing 46 n n C23 H28 5S4 sing 47 n n C23 H29 5S4 sing 48 n n C23 H30 5S4 sing 49 n n N24 H31 5S4 sing 50 n n N24 H32 5S4 sing 51 n n P02 OP3 5S4 sing 52 n n C04 H10 5S4 sing 53 n n C06 H12 5S4 sing 54 n n C06 H13 5S4 sing 55 n n C06 H14 5S4 sing 56 n n C07 H15 5S4 sing 57 n n C07 H16 5S4 sing 58 n n C07 H17 5S4 sing 59 n n O29 H18 5S4 sing 60 n n OP3 H33 5S4 sing 61 n n # _atom_sites.entry_id 5ES8 _atom_sites.fract_transf_matrix[1][1] 0.013063 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000404 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009896 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007211 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5S4 A 1 801 772 5S4 OOO . D 2 5S4 B 1 801 772 5S4 OOO . E 3 HOH A 1 901 4 HOH HOH . E 3 HOH A 2 902 3 HOH HOH . E 3 HOH A 3 903 11 HOH HOH . E 3 HOH A 4 904 14 HOH HOH . E 3 HOH A 5 905 18 HOH HOH . E 3 HOH A 6 906 6 HOH HOH . E 3 HOH A 7 907 17 HOH HOH . E 3 HOH A 8 908 8 HOH HOH . F 3 HOH B 1 901 5 HOH HOH . F 3 HOH B 2 902 7 HOH HOH . F 3 HOH B 3 903 12 HOH HOH . F 3 HOH B 4 904 1 HOH HOH . F 3 HOH B 5 905 19 HOH HOH . F 3 HOH B 6 906 2 HOH HOH . F 3 HOH B 7 907 13 HOH HOH . F 3 HOH B 8 908 16 HOH HOH . F 3 HOH B 9 909 9 HOH HOH . F 3 HOH B 10 910 10 HOH HOH . F 3 HOH B 11 911 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 5S4 . . . D 2 -132.223 54.091 53.513 1 77.77 ? C10 5S4 801 B 1 HETATM 2 O O27 5S4 . . . D 2 -133.328 54.596 53.415 1 82.15 ? O27 5S4 801 B 1 HETATM 3 C C08 5S4 . . . D 2 -132.066 52.814 54.306 1 99.46 ? C08 5S4 801 B 1 HETATM 4 O O09 5S4 . . . D 2 -133.318 52.272 54.645 1 99.95 ? O09 5S4 801 B 1 HETATM 5 C C05 5S4 . . . D 2 -131.348 53.078 55.636 1 87.81 ? C05 5S4 801 B 1 HETATM 6 C C04 5S4 . . . D 2 -132.061 54.254 56.268 1 90.5 ? C04 5S4 801 B 1 HETATM 7 C C06 5S4 . . . D 2 -131.515 51.861 56.584 1 85.19 ? C06 5S4 801 B 1 HETATM 8 C C07 5S4 . . . D 2 -129.878 53.412 55.459 1 89.31 ? C07 5S4 801 B 1 HETATM 9 P P02 5S4 . . . D 2 -132.35 55.352 58.499 1 68.26 ? P02 5S4 801 B 1 HETATM 10 O O03 5S4 . . . D 2 -131.585 54.319 57.593 1 78.03 ? O03 5S4 801 B 1 HETATM 11 O O01 5S4 . . . D 2 -132.008 56.76 58.08 1 89.61 ? O01 5S4 801 B 1 HETATM 12 O O29 5S4 . . . D 2 -133.832 55.131 58.339 1 65.21 -1 O29 5S4 801 B 1 HETATM 13 N N11 5S4 . . . D 2 -131.057 54.699 52.869 1 70.75 ? N11 5S4 801 B 1 HETATM 14 C C12 5S4 . . . D 2 -131.04 55.902 52.064 1 70.73 ? C12 5S4 801 B 1 HETATM 15 C C13 5S4 . . . D 2 -132.204 55.962 51.056 1 69.37 ? C13 5S4 801 B 1 HETATM 16 C C14 5S4 . . . D 2 -131.929 56.34 49.566 1 67.67 ? C14 5S4 801 B 1 HETATM 17 O O26 5S4 . . . D 2 -132.562 55.781 48.686 1 93.98 ? O26 5S4 801 B 1 HETATM 18 N N18 5S4 . . . D 2 -128.858 57.175 46.34 1 77.99 ? N18 5S4 801 B 1 HETATM 19 C C17 5S4 . . . D 2 -129.95 56.562 47.067 1 77.9 ? C17 5S4 801 B 1 HETATM 20 C C16 5S4 . . . D 2 -130.668 57.686 47.834 1 70.5 ? C16 5S4 801 B 1 HETATM 21 N N15 5S4 . . . D 2 -130.935 57.332 49.238 1 65.49 ? N15 5S4 801 B 1 HETATM 22 N N24 5S4 . . . D 2 -130.538 56.515 43.614 1 91.66 ? N24 5S4 801 B 1 HETATM 23 C C20 5S4 . . . D 2 -129.513 55.844 44.315 1 90.56 ? C20 5S4 801 B 1 HETATM 24 C C19 5S4 . . . D 2 -128.601 56.864 44.977 1 84.43 ? C19 5S4 801 B 1 HETATM 25 O O25 5S4 . . . D 2 -127.695 57.403 44.383 1 126.51 ? O25 5S4 801 B 1 HETATM 26 C C21 5S4 . . . D 2 -128.775 54.955 43.343 1 77.61 ? C21 5S4 801 B 1 HETATM 27 C C22 5S4 . . . D 2 -127.498 54.425 43.943 1 72.13 ? C22 5S4 801 B 1 HETATM 28 C C23 5S4 . . . D 2 -129.722 53.796 42.984 1 83.02 ? C23 5S4 801 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #