data_5ESE
#
_model_server_result.job_id            V7zxFYyV5Fb-1Pv3op2qsg 
_model_server_result.datetime_utc      '2024-11-26 17:32:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ese 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    5ESE 
#
_exptl.entry_id    5ESE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.24 
_cell.angle_gamma         90 
_cell.entry_id            5ESE 
_cell.length_a            78.35 
_cell.length_b            67.28 
_cell.length_c            81.02 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ESE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 470 A CYS 470 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N5 TPF . A TPF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     5ESE 
_atom_sites.fract_transf_matrix[1][1]    0.012763 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002076 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014863 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012505 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 601 HEM HEM . 
C 3 TPF A 1 602 1 TPF TPF . 
D 4 HOH A 1 701 22 HOH HOH . 
D 4 HOH A 2 702 81 HOH HOH . 
D 4 HOH A 3 703 41 HOH HOH . 
D 4 HOH A 4 704 14 HOH HOH . 
D 4 HOH A 5 705 63 HOH HOH . 
D 4 HOH A 6 706 42 HOH HOH . 
D 4 HOH A 7 707 50 HOH HOH . 
D 4 HOH A 8 708 31 HOH HOH . 
D 4 HOH A 9 709 27 HOH HOH . 
D 4 HOH A 10 710 40 HOH HOH . 
D 4 HOH A 11 711 96 HOH HOH . 
D 4 HOH A 12 712 99 HOH HOH . 
D 4 HOH A 13 713 18 HOH HOH . 
D 4 HOH A 14 714 89 HOH HOH . 
D 4 HOH A 15 715 10 HOH HOH . 
D 4 HOH A 16 716 1 HOH HOH . 
D 4 HOH A 17 717 35 HOH HOH . 
D 4 HOH A 18 718 43 HOH HOH . 
D 4 HOH A 19 719 25 HOH HOH . 
D 4 HOH A 20 720 73 HOH HOH . 
D 4 HOH A 21 721 100 HOH HOH . 
D 4 HOH A 22 722 13 HOH HOH . 
D 4 HOH A 23 723 78 HOH HOH . 
D 4 HOH A 24 724 70 HOH HOH . 
D 4 HOH A 25 725 7 HOH HOH . 
D 4 HOH A 26 726 36 HOH HOH . 
D 4 HOH A 27 727 16 HOH HOH . 
D 4 HOH A 28 728 8 HOH HOH . 
D 4 HOH A 29 729 21 HOH HOH . 
D 4 HOH A 30 730 59 HOH HOH . 
D 4 HOH A 31 731 69 HOH HOH . 
D 4 HOH A 32 732 85 HOH HOH . 
D 4 HOH A 33 733 38 HOH HOH . 
D 4 HOH A 34 734 33 HOH HOH . 
D 4 HOH A 35 735 66 HOH HOH . 
D 4 HOH A 36 736 97 HOH HOH . 
D 4 HOH A 37 737 2 HOH HOH . 
D 4 HOH A 38 738 17 HOH HOH . 
D 4 HOH A 39 739 9 HOH HOH . 
D 4 HOH A 40 740 29 HOH HOH . 
D 4 HOH A 41 741 15 HOH HOH . 
D 4 HOH A 42 742 54 HOH HOH . 
D 4 HOH A 43 743 28 HOH HOH . 
D 4 HOH A 44 744 23 HOH HOH . 
D 4 HOH A 45 745 79 HOH HOH . 
D 4 HOH A 46 746 61 HOH HOH . 
D 4 HOH A 47 747 20 HOH HOH . 
D 4 HOH A 48 748 26 HOH HOH . 
D 4 HOH A 49 749 60 HOH HOH . 
D 4 HOH A 50 750 46 HOH HOH . 
D 4 HOH A 51 751 80 HOH HOH . 
D 4 HOH A 52 752 37 HOH HOH . 
D 4 HOH A 53 753 12 HOH HOH . 
D 4 HOH A 54 754 4 HOH HOH . 
D 4 HOH A 55 755 6 HOH HOH . 
D 4 HOH A 56 756 34 HOH HOH . 
D 4 HOH A 57 757 65 HOH HOH . 
D 4 HOH A 58 758 45 HOH HOH . 
D 4 HOH A 59 759 5 HOH HOH . 
D 4 HOH A 60 760 74 HOH HOH . 
D 4 HOH A 61 761 30 HOH HOH . 
D 4 HOH A 62 762 51 HOH HOH . 
D 4 HOH A 63 763 24 HOH HOH . 
D 4 HOH A 64 764 11 HOH HOH . 
D 4 HOH A 65 765 53 HOH HOH . 
D 4 HOH A 66 766 44 HOH HOH . 
D 4 HOH A 67 767 62 HOH HOH . 
D 4 HOH A 68 768 3 HOH HOH . 
D 4 HOH A 69 769 72 HOH HOH . 
D 4 HOH A 70 770 67 HOH HOH . 
D 4 HOH A 71 771 39 HOH HOH . 
D 4 HOH A 72 772 49 HOH HOH . 
D 4 HOH A 73 773 56 HOH HOH . 
D 4 HOH A 74 774 98 HOH HOH . 
D 4 HOH A 75 775 82 HOH HOH . 
D 4 HOH A 76 776 71 HOH HOH . 
D 4 HOH A 77 777 55 HOH HOH . 
D 4 HOH A 78 778 19 HOH HOH . 
D 4 HOH A 79 779 52 HOH HOH . 
D 4 HOH A 80 780 76 HOH HOH . 
D 4 HOH A 81 781 86 HOH HOH . 
D 4 HOH A 82 782 84 HOH HOH . 
D 4 HOH A 83 783 48 HOH HOH . 
D 4 HOH A 84 784 94 HOH HOH . 
D 4 HOH A 85 785 64 HOH HOH . 
D 4 HOH A 86 786 75 HOH HOH . 
D 4 HOH A 87 787 77 HOH HOH . 
D 4 HOH A 88 788 93 HOH HOH . 
D 4 HOH A 89 789 91 HOH HOH . 
D 4 HOH A 90 790 68 HOH HOH . 
D 4 HOH A 91 791 90 HOH HOH . 
D 4 HOH A 92 792 95 HOH HOH . 
D 4 HOH A 93 793 32 HOH HOH . 
D 4 HOH A 94 794 83 HOH HOH . 
D 4 HOH A 95 795 58 HOH HOH . 
D 4 HOH A 96 796 87 HOH HOH . 
D 4 HOH A 97 797 57 HOH HOH . 
D 4 HOH A 98 798 92 HOH HOH . 
D 4 HOH A 99 799 88 HOH HOH . 
D 4 HOH A 100 800 47 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 27.254 9.274 18.398 1 37.69 ? CHA HEM 601 A 1 
HETATM 2 C CHB HEM . . . B 2 26.659 12.305 22.167 1 36.35 ? CHB HEM 601 A 1 
HETATM 3 C CHC HEM . . . B 2 29.076 15.739 19.759 1 42.08 ? CHC HEM 601 A 1 
HETATM 4 C CHD HEM . . . B 2 29.713 12.731 16.012 1 38.31 ? CHD HEM 601 A 1 
HETATM 5 C C1A HEM . . . B 2 26.877 9.793 19.617 1 43.94 ? C1A HEM 601 A 1 
HETATM 6 C C2A HEM . . . B 2 26.121 9.101 20.643 1 41.38 ? C2A HEM 601 A 1 
HETATM 7 C C3A HEM . . . B 2 25.958 9.934 21.674 1 38.03 ? C3A HEM 601 A 1 
HETATM 8 C C4A HEM . . . B 2 26.606 11.19 21.353 1 41.9 ? C4A HEM 601 A 1 
HETATM 9 C CMA HEM . . . B 2 25.206 9.611 22.984 1 38.5 ? CMA HEM 601 A 1 
HETATM 10 C CAA HEM . . . B 2 25.586 7.655 20.566 1 36.26 ? CAA HEM 601 A 1 
HETATM 11 C CBA HEM . . . B 2 24.356 7.606 19.667 1 39.64 ? CBA HEM 601 A 1 
HETATM 12 C CGA HEM . . . B 2 23.757 6.224 19.717 1 45.45 ? CGA HEM 601 A 1 
HETATM 13 O O1A HEM . . . B 2 22.71 6 19.054 1 44.88 ? O1A HEM 601 A 1 
HETATM 14 O O2A HEM . . . B 2 24.325 5.348 20.42 1 40.23 ? O2A HEM 601 A 1 
HETATM 15 C C1B HEM . . . B 2 27.291 13.492 21.867 1 34.28 ? C1B HEM 601 A 1 
HETATM 16 C C2B HEM . . . B 2 27.451 14.634 22.749 1 44.42 ? C2B HEM 601 A 1 
HETATM 17 C C3B HEM . . . B 2 28.124 15.587 22.075 1 38.76 ? C3B HEM 601 A 1 
HETATM 18 C C4B HEM . . . B 2 28.403 15.068 20.754 1 32.66 ? C4B HEM 601 A 1 
HETATM 19 C CMB HEM . . . B 2 26.917 14.674 24.199 1 38.31 ? CMB HEM 601 A 1 
HETATM 20 C CAB HEM . . . B 2 28.576 17.008 22.509 1 39.37 ? CAB HEM 601 A 1 
HETATM 21 C CBB HEM . . . B 2 28.359 17.55 23.713 1 44.65 ? CBB HEM 601 A 1 
HETATM 22 C C1C HEM . . . B 2 29.519 15.204 18.571 1 41.22 ? C1C HEM 601 A 1 
HETATM 23 C C2C HEM . . . B 2 30.456 15.833 17.666 1 40.59 ? C2C HEM 601 A 1 
HETATM 24 C C3C HEM . . . B 2 30.636 15.007 16.617 1 42.08 ? C3C HEM 601 A 1 
HETATM 25 C C4C HEM . . . B 2 29.819 13.826 16.843 1 40.78 ? C4C HEM 601 A 1 
HETATM 26 C CMC HEM . . . B 2 31.08 17.224 17.94 1 33.41 ? CMC HEM 601 A 1 
HETATM 27 C CAC HEM . . . B 2 31.537 15.183 15.367 1 44.14 ? CAC HEM 601 A 1 
HETATM 28 C CBC HEM . . . B 2 32.414 16.18 15.191 1 47.6 ? CBC HEM 601 A 1 
HETATM 29 C C1D HEM . . . B 2 29.141 11.513 16.331 1 37.48 ? C1D HEM 601 A 1 
HETATM 30 C C2D HEM . . . B 2 29.194 10.298 15.54 1 45.67 ? C2D HEM 601 A 1 
HETATM 31 C C3D HEM . . . B 2 28.508 9.337 16.187 1 43.65 ? C3D HEM 601 A 1 
HETATM 32 C C4D HEM . . . B 2 28.006 9.909 17.428 1 36.88 ? C4D HEM 601 A 1 
HETATM 33 C CMD HEM . . . B 2 29.905 10.136 14.174 1 32.22 ? CMD HEM 601 A 1 
HETATM 34 C CAD HEM . . . B 2 28.339 7.879 15.682 1 36.46 ? CAD HEM 601 A 1 
HETATM 35 C CBD HEM . . . B 2 26.879 7.433 15.618 1 39.76 ? CBD HEM 601 A 1 
HETATM 36 C CGD HEM . . . B 2 26.801 5.955 15.32 1 45.5 ? CGD HEM 601 A 1 
HETATM 37 O O1D HEM . . . B 2 27.87 5.302 15.185 1 43.23 ? O1D HEM 601 A 1 
HETATM 38 O O2D HEM . . . B 2 25.663 5.427 15.221 1 43.73 ? O2D HEM 601 A 1 
HETATM 39 N NA HEM . . . B 2 27.158 11.064 20.089 1 40.72 ? NA HEM 601 A 1 
HETATM 40 N NB HEM . . . B 2 27.885 13.795 20.66 1 39.58 ? NB HEM 601 A 1 
HETATM 41 N NC HEM . . . B 2 29.153 13.985 18.04 1 38.16 ? NC HEM 601 A 1 
HETATM 42 N ND HEM . . . B 2 28.41 11.233 17.471 1 38.93 ? ND HEM 601 A 1 
HETATM 43 FE FE HEM . . . B 2 28.238 12.511 19.111 1 29.3 ? FE HEM 601 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#