data_5ESF
#
_model_server_result.job_id            3CGd1FqtPM9LJ49onl-ePw 
_model_server_result.datetime_utc      '2024-11-05 21:09:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5esf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    5ESF 
#
_exptl.entry_id    5ESF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.39 
_cell.angle_gamma         90 
_cell.entry_id            5ESF 
_cell.length_a            78.49 
_cell.length_b            66.93 
_cell.length_c            81.06 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ESF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 470 A CYS 470 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N5 TPF . A TPF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     5ESF 
_atom_sites.fract_transf_matrix[1][1]    0.01274 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002107 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014941 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012504 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 601 HEM HEM . 
C 3 TPF A 1 602 1 TPF TPF . 
D 4 HOH A 1 701 14 HOH HOH . 
D 4 HOH A 2 702 13 HOH HOH . 
D 4 HOH A 3 703 33 HOH HOH . 
D 4 HOH A 4 704 48 HOH HOH . 
D 4 HOH A 5 705 78 HOH HOH . 
D 4 HOH A 6 706 50 HOH HOH . 
D 4 HOH A 7 707 43 HOH HOH . 
D 4 HOH A 8 708 106 HOH HOH . 
D 4 HOH A 9 709 64 HOH HOH . 
D 4 HOH A 10 710 29 HOH HOH . 
D 4 HOH A 11 711 54 HOH HOH . 
D 4 HOH A 12 712 90 HOH HOH . 
D 4 HOH A 13 713 47 HOH HOH . 
D 4 HOH A 14 714 27 HOH HOH . 
D 4 HOH A 15 715 17 HOH HOH . 
D 4 HOH A 16 716 16 HOH HOH . 
D 4 HOH A 17 717 5 HOH HOH . 
D 4 HOH A 18 718 76 HOH HOH . 
D 4 HOH A 19 719 7 HOH HOH . 
D 4 HOH A 20 720 57 HOH HOH . 
D 4 HOH A 21 721 12 HOH HOH . 
D 4 HOH A 22 722 19 HOH HOH . 
D 4 HOH A 23 723 10 HOH HOH . 
D 4 HOH A 24 724 9 HOH HOH . 
D 4 HOH A 25 725 81 HOH HOH . 
D 4 HOH A 26 726 75 HOH HOH . 
D 4 HOH A 27 727 66 HOH HOH . 
D 4 HOH A 28 728 40 HOH HOH . 
D 4 HOH A 29 729 42 HOH HOH . 
D 4 HOH A 30 730 38 HOH HOH . 
D 4 HOH A 31 731 91 HOH HOH . 
D 4 HOH A 32 732 24 HOH HOH . 
D 4 HOH A 33 733 69 HOH HOH . 
D 4 HOH A 34 734 51 HOH HOH . 
D 4 HOH A 35 735 62 HOH HOH . 
D 4 HOH A 36 736 55 HOH HOH . 
D 4 HOH A 37 737 1 HOH HOH . 
D 4 HOH A 38 738 31 HOH HOH . 
D 4 HOH A 39 739 3 HOH HOH . 
D 4 HOH A 40 740 71 HOH HOH . 
D 4 HOH A 41 741 52 HOH HOH . 
D 4 HOH A 42 742 4 HOH HOH . 
D 4 HOH A 43 743 21 HOH HOH . 
D 4 HOH A 44 744 18 HOH HOH . 
D 4 HOH A 45 745 2 HOH HOH . 
D 4 HOH A 46 746 58 HOH HOH . 
D 4 HOH A 47 747 68 HOH HOH . 
D 4 HOH A 48 748 23 HOH HOH . 
D 4 HOH A 49 749 15 HOH HOH . 
D 4 HOH A 50 750 70 HOH HOH . 
D 4 HOH A 51 751 53 HOH HOH . 
D 4 HOH A 52 752 49 HOH HOH . 
D 4 HOH A 53 753 67 HOH HOH . 
D 4 HOH A 54 754 20 HOH HOH . 
D 4 HOH A 55 755 34 HOH HOH . 
D 4 HOH A 56 756 85 HOH HOH . 
D 4 HOH A 57 757 25 HOH HOH . 
D 4 HOH A 58 758 8 HOH HOH . 
D 4 HOH A 59 759 22 HOH HOH . 
D 4 HOH A 60 760 6 HOH HOH . 
D 4 HOH A 61 761 77 HOH HOH . 
D 4 HOH A 62 762 107 HOH HOH . 
D 4 HOH A 63 763 11 HOH HOH . 
D 4 HOH A 64 764 30 HOH HOH . 
D 4 HOH A 65 765 61 HOH HOH . 
D 4 HOH A 66 766 104 HOH HOH . 
D 4 HOH A 67 767 60 HOH HOH . 
D 4 HOH A 68 768 79 HOH HOH . 
D 4 HOH A 69 769 26 HOH HOH . 
D 4 HOH A 70 770 95 HOH HOH . 
D 4 HOH A 71 771 46 HOH HOH . 
D 4 HOH A 72 772 37 HOH HOH . 
D 4 HOH A 73 773 28 HOH HOH . 
D 4 HOH A 74 774 87 HOH HOH . 
D 4 HOH A 75 775 88 HOH HOH . 
D 4 HOH A 76 776 59 HOH HOH . 
D 4 HOH A 77 777 84 HOH HOH . 
D 4 HOH A 78 778 36 HOH HOH . 
D 4 HOH A 79 779 72 HOH HOH . 
D 4 HOH A 80 780 86 HOH HOH . 
D 4 HOH A 81 781 93 HOH HOH . 
D 4 HOH A 82 782 97 HOH HOH . 
D 4 HOH A 83 783 45 HOH HOH . 
D 4 HOH A 84 784 98 HOH HOH . 
D 4 HOH A 85 785 32 HOH HOH . 
D 4 HOH A 86 786 80 HOH HOH . 
D 4 HOH A 87 787 35 HOH HOH . 
D 4 HOH A 88 788 63 HOH HOH . 
D 4 HOH A 89 789 82 HOH HOH . 
D 4 HOH A 90 790 56 HOH HOH . 
D 4 HOH A 91 791 44 HOH HOH . 
D 4 HOH A 92 792 65 HOH HOH . 
D 4 HOH A 93 793 39 HOH HOH . 
D 4 HOH A 94 794 41 HOH HOH . 
D 4 HOH A 95 795 101 HOH HOH . 
D 4 HOH A 96 796 103 HOH HOH . 
D 4 HOH A 97 797 74 HOH HOH . 
D 4 HOH A 98 798 92 HOH HOH . 
D 4 HOH A 99 799 99 HOH HOH . 
D 4 HOH A 100 800 83 HOH HOH . 
D 4 HOH A 101 801 105 HOH HOH . 
D 4 HOH A 102 802 102 HOH HOH . 
D 4 HOH A 103 803 100 HOH HOH . 
D 4 HOH A 104 804 73 HOH HOH . 
D 4 HOH A 105 805 89 HOH HOH . 
D 4 HOH A 106 806 94 HOH HOH . 
D 4 HOH A 107 807 96 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 27.152 8.461 18.421 1 32.31 ? CHA HEM 601 A 1 
HETATM 2 C CHB HEM . . . B 2 26.548 11.604 22.1 1 30.44 ? CHB HEM 601 A 1 
HETATM 3 C CHC HEM . . . B 2 29.029 14.983 19.668 1 37.74 ? CHC HEM 601 A 1 
HETATM 4 C CHD HEM . . . B 2 29.641 11.89 15.985 1 35.32 ? CHD HEM 601 A 1 
HETATM 5 C C1A HEM . . . B 2 26.778 9.036 19.62 1 39.63 ? C1A HEM 601 A 1 
HETATM 6 C C2A HEM . . . B 2 25.995 8.387 20.651 1 32.55 ? C2A HEM 601 A 1 
HETATM 7 C C3A HEM . . . B 2 25.82 9.247 21.651 1 32.77 ? C3A HEM 601 A 1 
HETATM 8 C C4A HEM . . . B 2 26.493 10.479 21.308 1 33.49 ? C4A HEM 601 A 1 
HETATM 9 C CMA HEM . . . B 2 25.038 8.977 22.953 1 32.23 ? CMA HEM 601 A 1 
HETATM 10 C CAA HEM . . . B 2 25.439 6.954 20.585 1 32.23 ? CAA HEM 601 A 1 
HETATM 11 C CBA HEM . . . B 2 24.152 6.962 19.767 1 33.6 ? CBA HEM 601 A 1 
HETATM 12 C CGA HEM . . . B 2 23.564 5.571 19.783 1 40.12 ? CGA HEM 601 A 1 
HETATM 13 O O1A HEM . . . B 2 22.582 5.327 19.029 1 40.04 ? O1A HEM 601 A 1 
HETATM 14 O O2A HEM . . . B 2 24.085 4.709 20.548 1 35.84 ? O2A HEM 601 A 1 
HETATM 15 C C1B HEM . . . B 2 27.189 12.777 21.777 1 32 ? C1B HEM 601 A 1 
HETATM 16 C C2B HEM . . . B 2 27.331 13.935 22.638 1 34.87 ? C2B HEM 601 A 1 
HETATM 17 C C3B HEM . . . B 2 28.015 14.873 21.955 1 35.56 ? C3B HEM 601 A 1 
HETATM 18 C C4B HEM . . . B 2 28.333 14.323 20.656 1 31.06 ? C4B HEM 601 A 1 
HETATM 19 C CMB HEM . . . B 2 26.766 13.998 24.076 1 33.22 ? CMB HEM 601 A 1 
HETATM 20 C CAB HEM . . . B 2 28.47 16.299 22.357 1 36.35 ? CAB HEM 601 A 1 
HETATM 21 C CBB HEM . . . B 2 28.374 16.799 23.591 1 41.84 ? CBB HEM 601 A 1 
HETATM 22 C C1C HEM . . . B 2 29.46 14.419 18.489 1 36.62 ? C1C HEM 601 A 1 
HETATM 23 C C2C HEM . . . B 2 30.396 15.024 17.561 1 33.63 ? C2C HEM 601 A 1 
HETATM 24 C C3C HEM . . . B 2 30.561 14.165 16.535 1 38.33 ? C3C HEM 601 A 1 
HETATM 25 C C4C HEM . . . B 2 29.743 12.995 16.802 1 37.06 ? C4C HEM 601 A 1 
HETATM 26 C CMC HEM . . . B 2 31.03 16.42 17.779 1 28.06 ? CMC HEM 601 A 1 
HETATM 27 C CAC HEM . . . B 2 31.442 14.279 15.265 1 42.62 ? CAC HEM 601 A 1 
HETATM 28 C CBC HEM . . . B 2 32.305 15.27 15.027 1 49.8 ? CBC HEM 601 A 1 
HETATM 29 C C1D HEM . . . B 2 29.071 10.671 16.293 1 31.7 ? C1D HEM 601 A 1 
HETATM 30 C C2D HEM . . . B 2 29.155 9.484 15.469 1 39.37 ? C2D HEM 601 A 1 
HETATM 31 C C3D HEM . . . B 2 28.373 8.404 16.226 1 34.43 ? C3D HEM 601 A 1 
HETATM 32 C C4D HEM . . . B 2 27.9 9.053 17.432 1 32.74 ? C4D HEM 601 A 1 
HETATM 33 C CMD HEM . . . B 2 29.881 9.341 14.112 1 26.49 ? CMD HEM 601 A 1 
HETATM 34 C CAD HEM . . . B 2 28.166 6.938 15.79 1 29.77 ? CAD HEM 601 A 1 
HETATM 35 C CBD HEM . . . B 2 26.695 6.581 15.601 1 32.45 ? CBD HEM 601 A 1 
HETATM 36 C CGD HEM . . . B 2 26.602 5.093 15.366 1 37.13 ? CGD HEM 601 A 1 
HETATM 37 O O1D HEM . . . B 2 27.677 4.432 15.305 1 35.14 ? O1D HEM 601 A 1 
HETATM 38 O O2D HEM . . . B 2 25.462 4.565 15.251 1 36.97 ? O2D HEM 601 A 1 
HETATM 39 N NA HEM . . . B 2 27.073 10.317 20.059 1 33.28 ? NA HEM 601 A 1 
HETATM 40 N NB HEM . . . B 2 27.812 13.051 20.576 1 30.96 ? NB HEM 601 A 1 
HETATM 41 N NC HEM . . . B 2 29.087 13.182 18.001 1 34.9 ? NC HEM 601 A 1 
HETATM 42 N ND HEM . . . B 2 28.322 10.378 17.424 1 31.5 ? ND HEM 601 A 1 
HETATM 43 FE FE HEM . . . B 2 28.183 11.722 19.048 1 31.77 ? FE HEM 601 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#