data_5ESH # _model_server_result.job_id R0VhhjvQ8UwFN7LCJzbwtQ _model_server_result.datetime_utc '2024-11-05 16:42:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5esh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 5ESH # _exptl.entry_id 5ESH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.34 _cell.angle_gamma 90 _cell.entry_id 5ESH _cell.length_a 77.56 _cell.length_b 66.85 _cell.length_c 80.88 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ESH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 470 A CYS 470 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N39 1YN . A 1YN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 222 n n CHA C4D HEM doub 223 n n CHA HHA HEM sing 224 n n CHB C4A HEM sing 225 n n CHB C1B HEM doub 226 n n CHB HHB HEM sing 227 n n CHC C4B HEM sing 228 n n CHC C1C HEM doub 229 n n CHC HHC HEM sing 230 n n CHD C4C HEM doub 231 n n CHD C1D HEM sing 232 n n CHD HHD HEM sing 233 n n C1A C2A HEM doub 234 n y C1A NA HEM sing 235 n y C2A C3A HEM sing 236 n y C2A CAA HEM sing 237 n n C3A C4A HEM doub 238 n y C3A CMA HEM sing 239 n n C4A NA HEM sing 240 n y CMA HMA HEM sing 241 n n CMA HMAA HEM sing 242 n n CMA HMAB HEM sing 243 n n CAA CBA HEM sing 244 n n CAA HAA HEM sing 245 n n CAA HAAA HEM sing 246 n n CBA CGA HEM sing 247 n n CBA HBA HEM sing 248 n n CBA HBAA HEM sing 249 n n CGA O1A HEM doub 250 n n CGA O2A HEM sing 251 n n C1B C2B HEM sing 252 n n C1B NB HEM sing 253 n n C2B C3B HEM doub 254 n n C2B CMB HEM sing 255 n n C3B C4B HEM sing 256 n n C3B CAB HEM sing 257 n n C4B NB HEM doub 258 n n CMB HMB HEM sing 259 n n CMB HMBA HEM sing 260 n n CMB HMBB HEM sing 261 n n CAB CBB HEM doub 262 n n CAB HAB HEM sing 263 n n CBB HBB HEM sing 264 n n CBB HBBA HEM sing 265 n n C1C C2C HEM sing 266 n y C1C NC HEM sing 267 n y C2C C3C HEM doub 268 n y C2C CMC HEM sing 269 n n C3C C4C HEM sing 270 n y C3C CAC HEM sing 271 n n C4C NC HEM sing 272 n y CMC HMC HEM sing 273 n n CMC HMCA HEM sing 274 n n CMC HMCB HEM sing 275 n n CAC CBC HEM doub 276 n n CAC HAC HEM sing 277 n n CBC HBC HEM sing 278 n n CBC HBCA HEM sing 279 n n C1D C2D HEM sing 280 n n C1D ND HEM doub 281 n n C2D C3D HEM doub 282 n n C2D CMD HEM sing 283 n n C3D C4D HEM sing 284 n n C3D CAD HEM sing 285 n n C4D ND HEM sing 286 n n CMD HMD HEM sing 287 n n CMD HMDA HEM sing 288 n n CMD HMDB HEM sing 289 n n CAD CBD HEM sing 290 n n CAD HAD HEM sing 291 n n CAD HADA HEM sing 292 n n CBD CGD HEM sing 293 n n CBD HBD HEM sing 294 n n CBD HBDA HEM sing 295 n n CGD O1D HEM doub 296 n n CGD O2D HEM sing 297 n n O2A H2A HEM sing 298 n n O2D H2D HEM sing 299 n n FE NA HEM sing 300 n n FE NB HEM sing 301 n n FE NC HEM sing 302 n n FE ND HEM sing 303 n n # _atom_sites.entry_id 5ESH _atom_sites.fract_transf_matrix[1][1] 0.012893 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00189 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014959 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012496 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 601 HEM HEM . C 3 1YN A 1 602 1 1YN 1YN . D 4 HOH A 1 701 141 HOH HOH . D 4 HOH A 2 702 38 HOH HOH . D 4 HOH A 3 703 53 HOH HOH . D 4 HOH A 4 704 81 HOH HOH . D 4 HOH A 5 705 116 HOH HOH . D 4 HOH A 6 706 52 HOH HOH . D 4 HOH A 7 707 72 HOH HOH . D 4 HOH A 8 708 17 HOH HOH . D 4 HOH A 9 709 90 HOH HOH . D 4 HOH A 10 710 83 HOH HOH . D 4 HOH A 11 711 102 HOH HOH . D 4 HOH A 12 712 66 HOH HOH . D 4 HOH A 13 713 125 HOH HOH . D 4 HOH A 14 714 135 HOH HOH . D 4 HOH A 15 715 129 HOH HOH . D 4 HOH A 16 716 68 HOH HOH . D 4 HOH A 17 717 107 HOH HOH . D 4 HOH A 18 718 8 HOH HOH . D 4 HOH A 19 719 78 HOH HOH . D 4 HOH A 20 720 89 HOH HOH . D 4 HOH A 21 721 60 HOH HOH . D 4 HOH A 22 722 93 HOH HOH . D 4 HOH A 23 723 49 HOH HOH . D 4 HOH A 24 724 124 HOH HOH . D 4 HOH A 25 725 98 HOH HOH . D 4 HOH A 26 726 36 HOH HOH . D 4 HOH A 27 727 45 HOH HOH . D 4 HOH A 28 728 11 HOH HOH . D 4 HOH A 29 729 92 HOH HOH . D 4 HOH A 30 730 2 HOH HOH . D 4 HOH A 31 731 139 HOH HOH . D 4 HOH A 32 732 23 HOH HOH . D 4 HOH A 33 733 16 HOH HOH . D 4 HOH A 34 734 35 HOH HOH . D 4 HOH A 35 735 56 HOH HOH . D 4 HOH A 36 736 3 HOH HOH . D 4 HOH A 37 737 67 HOH HOH . D 4 HOH A 38 738 87 HOH HOH . D 4 HOH A 39 739 25 HOH HOH . D 4 HOH A 40 740 42 HOH HOH . D 4 HOH A 41 741 95 HOH HOH . D 4 HOH A 42 742 65 HOH HOH . D 4 HOH A 43 743 1 HOH HOH . D 4 HOH A 44 744 106 HOH HOH . D 4 HOH A 45 745 18 HOH HOH . D 4 HOH A 46 746 91 HOH HOH . D 4 HOH A 47 747 37 HOH HOH . D 4 HOH A 48 748 120 HOH HOH . D 4 HOH A 49 749 21 HOH HOH . D 4 HOH A 50 750 70 HOH HOH . D 4 HOH A 51 751 73 HOH HOH . D 4 HOH A 52 752 63 HOH HOH . D 4 HOH A 53 753 132 HOH HOH . D 4 HOH A 54 754 112 HOH HOH . D 4 HOH A 55 755 44 HOH HOH . D 4 HOH A 56 756 101 HOH HOH . D 4 HOH A 57 757 127 HOH HOH . D 4 HOH A 58 758 31 HOH HOH . D 4 HOH A 59 759 121 HOH HOH . D 4 HOH A 60 760 122 HOH HOH . D 4 HOH A 61 761 32 HOH HOH . D 4 HOH A 62 762 27 HOH HOH . D 4 HOH A 63 763 6 HOH HOH . D 4 HOH A 64 764 69 HOH HOH . D 4 HOH A 65 765 19 HOH HOH . D 4 HOH A 66 766 118 HOH HOH . D 4 HOH A 67 767 26 HOH HOH . D 4 HOH A 68 768 57 HOH HOH . D 4 HOH A 69 769 84 HOH HOH . D 4 HOH A 70 770 59 HOH HOH . D 4 HOH A 71 771 47 HOH HOH . D 4 HOH A 72 772 20 HOH HOH . D 4 HOH A 73 773 148 HOH HOH . D 4 HOH A 74 774 51 HOH HOH . D 4 HOH A 75 775 117 HOH HOH . D 4 HOH A 76 776 130 HOH HOH . D 4 HOH A 77 777 12 HOH HOH . D 4 HOH A 78 778 9 HOH HOH . D 4 HOH A 79 779 39 HOH HOH . D 4 HOH A 80 780 86 HOH HOH . D 4 HOH A 81 781 15 HOH HOH . D 4 HOH A 82 782 136 HOH HOH . D 4 HOH A 83 783 103 HOH HOH . D 4 HOH A 84 784 149 HOH HOH . D 4 HOH A 85 785 96 HOH HOH . D 4 HOH A 86 786 14 HOH HOH . D 4 HOH A 87 787 111 HOH HOH . D 4 HOH A 88 788 28 HOH HOH . D 4 HOH A 89 789 137 HOH HOH . D 4 HOH A 90 790 79 HOH HOH . D 4 HOH A 91 791 55 HOH HOH . D 4 HOH A 92 792 7 HOH HOH . D 4 HOH A 93 793 24 HOH HOH . D 4 HOH A 94 794 5 HOH HOH . D 4 HOH A 95 795 88 HOH HOH . D 4 HOH A 96 796 61 HOH HOH . D 4 HOH A 97 797 146 HOH HOH . D 4 HOH A 98 798 76 HOH HOH . D 4 HOH A 99 799 34 HOH HOH . D 4 HOH A 100 800 77 HOH HOH . D 4 HOH A 101 801 13 HOH HOH . D 4 HOH A 102 802 43 HOH HOH . D 4 HOH A 103 803 41 HOH HOH . D 4 HOH A 104 804 30 HOH HOH . D 4 HOH A 105 805 109 HOH HOH . D 4 HOH A 106 806 108 HOH HOH . D 4 HOH A 107 807 48 HOH HOH . D 4 HOH A 108 808 80 HOH HOH . D 4 HOH A 109 809 119 HOH HOH . D 4 HOH A 110 810 147 HOH HOH . D 4 HOH A 111 811 123 HOH HOH . D 4 HOH A 112 812 85 HOH HOH . D 4 HOH A 113 813 97 HOH HOH . D 4 HOH A 114 814 10 HOH HOH . D 4 HOH A 115 815 128 HOH HOH . D 4 HOH A 116 816 133 HOH HOH . D 4 HOH A 117 817 71 HOH HOH . D 4 HOH A 118 818 140 HOH HOH . D 4 HOH A 119 819 105 HOH HOH . D 4 HOH A 120 820 29 HOH HOH . D 4 HOH A 121 821 126 HOH HOH . D 4 HOH A 122 822 82 HOH HOH . D 4 HOH A 123 823 143 HOH HOH . D 4 HOH A 124 824 142 HOH HOH . D 4 HOH A 125 825 50 HOH HOH . D 4 HOH A 126 826 74 HOH HOH . D 4 HOH A 127 827 46 HOH HOH . D 4 HOH A 128 828 33 HOH HOH . D 4 HOH A 129 829 54 HOH HOH . D 4 HOH A 130 830 75 HOH HOH . D 4 HOH A 131 831 64 HOH HOH . D 4 HOH A 132 832 99 HOH HOH . D 4 HOH A 133 833 22 HOH HOH . D 4 HOH A 134 834 40 HOH HOH . D 4 HOH A 135 835 94 HOH HOH . D 4 HOH A 136 836 100 HOH HOH . D 4 HOH A 137 837 4 HOH HOH . D 4 HOH A 138 838 115 HOH HOH . D 4 HOH A 139 839 138 HOH HOH . D 4 HOH A 140 840 62 HOH HOH . D 4 HOH A 141 841 131 HOH HOH . D 4 HOH A 142 842 145 HOH HOH . D 4 HOH A 143 843 113 HOH HOH . D 4 HOH A 144 844 58 HOH HOH . D 4 HOH A 145 845 114 HOH HOH . D 4 HOH A 146 846 110 HOH HOH . D 4 HOH A 147 847 134 HOH HOH . D 4 HOH A 148 848 104 HOH HOH . D 4 HOH A 149 849 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 104.487 8.553 18.563 1 24.55 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 103.805 11.569 22.293 1 25.14 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 106.338 14.989 20.013 1 30.51 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 106.842 12.076 16.156 1 25.54 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 104.097 9.091 19.746 1 29.99 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 103.319 8.38 20.734 1 27.97 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 103.134 9.201 21.774 1 26.92 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 103.777 10.464 21.467 1 27.72 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 102.331 8.851 23.072 1 25.9 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 102.814 6.922 20.61 1 27.18 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 101.432 6.89 19.954 1 29.6 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 100.797 5.527 20.1 1 28.84 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 99.648 5.323 19.614 1 30.38 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 101.42 4.638 20.733 1 30.6 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 104.47 12.732 22.019 1 24.73 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 104.619 13.847 22.929 1 29.46 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 105.316 14.792 22.275 1 24.65 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 105.629 14.296 20.96 1 23.63 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 104.041 13.835 24.37 1 28.04 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 105.81 16.189 22.7 1 29.45 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 105.635 16.665 23.927 1 36.15 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 106.714 14.498 18.787 1 30.62 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 107.581 15.156 17.856 1 25.98 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 107.697 14.347 16.784 1 27.86 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 106.948 13.151 17.025 1 29.5 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 108.177 16.568 18.117 1 25.24 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 108.517 14.536 15.478 1 33.05 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 109.567 15.371 15.443 1 37.46 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 106.321 10.843 16.457 1 24.9 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 106.462 9.659 15.631 1 28.31 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 105.732 8.555 16.393 1 26.32 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 105.216 9.195 17.59 1 28.11 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 107.196 9.577 14.254 1 23.13 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 105.572 7.071 15.983 1 28.02 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 104.156 6.776 15.515 1 27.69 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 104.034 5.277 15.411 1 32.67 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 105.087 4.577 15.503 1 31.31 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 102.889 4.783 15.247 1 32.69 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 104.372 10.385 20.213 1 27.29 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 105.091 13.051 20.818 1 27.14 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 106.362 13.266 18.275 1 30.55 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 105.586 10.533 17.597 1 25.2 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 105.43 11.837 19.235 1 27.92 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #