data_5ESL # _model_server_result.job_id CnWDH70Pb1_wDYu-pvkBOQ _model_server_result.datetime_utc '2024-11-26 15:37:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5esl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 5ESL # _exptl.entry_id 5ESL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 705.633 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(2R)-butan-2-yl]-4-{4-[4-(4-{[(2R,4S)-2-(2,4-dichlorophenyl)-2-(1H-1,2,4-triazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy}phenyl)piperazin-1-yl]phenyl}-2,4-dihydro-3H-1,2,4-triazol-3-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.42 _cell.angle_gamma 90 _cell.entry_id 5ESL _cell.length_a 77.09 _cell.length_b 65.39 _cell.length_c 80.78 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ESL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 470 A CYS 470 1_555 C FE HEM . A HEM 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc2 B N39 1YN . A 1YN 701 1_555 C FE HEM . A HEM 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? # _chem_comp.formula 'C35 H38 Cl2 N8 O4' _chem_comp.formula_weight 705.633 _chem_comp.id 1YN _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(2R)-butan-2-yl]-4-{4-[4-(4-{[(2R,4S)-2-(2,4-dichlorophenyl)-2-(1H-1,2,4-triazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy}phenyl)piperazin-1-yl]phenyl}-2,4-dihydro-3H-1,2,4-triazol-3-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Itraconazole # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL8 C45 1YN sing 1 n n C45 C44 1YN doub 2 n y C45 C46 1YN sing 3 n y C44 C43 1YN sing 4 n y C46 C47 1YN doub 5 n y C43 CL9 1YN sing 6 n n C43 C42 1YN doub 7 n y C47 C42 1YN sing 8 n y C42 C34 1YN sing 9 n n O33 C32 1YN sing 10 n n O33 C34 1YN sing 11 n n C32 C31 1YN sing 12 n n C34 O35 1YN sing 13 n n C34 C36 1YN sing 14 n n C31 O35 1YN sing 15 n n C31 C30 1YN sing 16 n n C36 N37 1YN sing 17 n n O29 C30 1YN sing 18 n n O29 C26 1YN sing 19 n n N37 N41 1YN sing 20 n y N37 C38 1YN sing 21 n y N41 C40 1YN doub 22 n y C25 C26 1YN doub 23 n y C25 C24 1YN sing 24 n y C26 C27 1YN sing 25 n y C40 N39 1YN sing 26 n y C01 C02 1YN sing 27 n n C38 N39 1YN doub 28 n y C24 C23 1YN doub 29 n y C27 C28 1YN doub 30 n y C23 C28 1YN sing 31 n y C23 N20 1YN sing 32 n n C02 C03 1YN sing 33 n n N20 C19 1YN sing 34 n n N20 C21 1YN sing 35 n n C18 C19 1YN sing 36 n n C18 N17 1YN sing 37 n n C12 C13 1YN doub 38 n y C12 C11 1YN sing 39 n y C13 C14 1YN sing 40 n y C22 C21 1YN sing 41 n n C22 N17 1YN sing 42 n n N10 C09 1YN doub 43 n n N10 N05 1YN sing 44 n n C09 N08 1YN sing 45 n n C03 N05 1YN sing 46 n n C03 C04 1YN sing 47 n n N05 C06 1YN sing 48 n n C11 N08 1YN sing 49 n n C11 C16 1YN doub 50 n y O07 C06 1YN doub 51 n n C14 N17 1YN sing 52 n n C14 C15 1YN doub 53 n y N08 C06 1YN sing 54 n n C16 C15 1YN sing 55 n y C12 H1 1YN sing 56 n n C01 H2 1YN sing 57 n n C01 H3 1YN sing 58 n n C01 H4 1YN sing 59 n n C02 H5 1YN sing 60 n n C02 H6 1YN sing 61 n n C03 H7 1YN sing 62 n n C04 H8 1YN sing 63 n n C04 H9 1YN sing 64 n n C04 H10 1YN sing 65 n n C09 H11 1YN sing 66 n n C13 H12 1YN sing 67 n n C15 H13 1YN sing 68 n n C16 H14 1YN sing 69 n n C18 H15 1YN sing 70 n n C18 H16 1YN sing 71 n n C19 H17 1YN sing 72 n n C19 H18 1YN sing 73 n n C21 H19 1YN sing 74 n n C21 H20 1YN sing 75 n n C22 H21 1YN sing 76 n n C22 H22 1YN sing 77 n n C24 H23 1YN sing 78 n n C25 H24 1YN sing 79 n n C27 H25 1YN sing 80 n n C28 H26 1YN sing 81 n n C30 H27 1YN sing 82 n n C30 H28 1YN sing 83 n n C31 H29 1YN sing 84 n n C32 H30 1YN sing 85 n n C32 H31 1YN sing 86 n n C36 H32 1YN sing 87 n n C36 H33 1YN sing 88 n n C38 H34 1YN sing 89 n n C40 H35 1YN sing 90 n n C44 H36 1YN sing 91 n n C46 H37 1YN sing 92 n n C47 H38 1YN sing 93 n n # _atom_sites.entry_id 5ESL _atom_sites.fract_transf_matrix[1][1] 0.012972 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00192 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015293 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012514 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1YN A 1 701 701 1YN 1YN . C 3 HEM A 1 702 601 HEM HEM . D 4 HOH A 1 801 1 HOH HOH . D 4 HOH A 2 802 55 HOH HOH . D 4 HOH A 3 803 58 HOH HOH . D 4 HOH A 4 804 89 HOH HOH . D 4 HOH A 5 805 87 HOH HOH . D 4 HOH A 6 806 2 HOH HOH . D 4 HOH A 7 807 4 HOH HOH . D 4 HOH A 8 808 20 HOH HOH . D 4 HOH A 9 809 101 HOH HOH . D 4 HOH A 10 810 3 HOH HOH . D 4 HOH A 11 811 46 HOH HOH . D 4 HOH A 12 812 69 HOH HOH . D 4 HOH A 13 813 39 HOH HOH . D 4 HOH A 14 814 30 HOH HOH . D 4 HOH A 15 815 70 HOH HOH . D 4 HOH A 16 816 34 HOH HOH . D 4 HOH A 17 817 14 HOH HOH . D 4 HOH A 18 818 74 HOH HOH . D 4 HOH A 19 819 18 HOH HOH . D 4 HOH A 20 820 6 HOH HOH . D 4 HOH A 21 821 24 HOH HOH . D 4 HOH A 22 822 27 HOH HOH . D 4 HOH A 23 823 52 HOH HOH . D 4 HOH A 24 824 38 HOH HOH . D 4 HOH A 25 825 25 HOH HOH . D 4 HOH A 26 826 8 HOH HOH . D 4 HOH A 27 827 35 HOH HOH . D 4 HOH A 28 828 40 HOH HOH . D 4 HOH A 29 829 7 HOH HOH . D 4 HOH A 30 830 71 HOH HOH . D 4 HOH A 31 831 23 HOH HOH . D 4 HOH A 32 832 54 HOH HOH . D 4 HOH A 33 833 51 HOH HOH . D 4 HOH A 34 834 41 HOH HOH . D 4 HOH A 35 835 19 HOH HOH . D 4 HOH A 36 836 29 HOH HOH . D 4 HOH A 37 837 93 HOH HOH . D 4 HOH A 38 838 50 HOH HOH . D 4 HOH A 39 839 65 HOH HOH . D 4 HOH A 40 840 28 HOH HOH . D 4 HOH A 41 841 11 HOH HOH . D 4 HOH A 42 842 81 HOH HOH . D 4 HOH A 43 843 9 HOH HOH . D 4 HOH A 44 844 12 HOH HOH . D 4 HOH A 45 845 47 HOH HOH . D 4 HOH A 46 846 13 HOH HOH . D 4 HOH A 47 847 10 HOH HOH . D 4 HOH A 48 848 36 HOH HOH . D 4 HOH A 49 849 17 HOH HOH . D 4 HOH A 50 850 73 HOH HOH . D 4 HOH A 51 851 42 HOH HOH . D 4 HOH A 52 852 60 HOH HOH . D 4 HOH A 53 853 64 HOH HOH . D 4 HOH A 54 854 44 HOH HOH . D 4 HOH A 55 855 79 HOH HOH . D 4 HOH A 56 856 75 HOH HOH . D 4 HOH A 57 857 62 HOH HOH . D 4 HOH A 58 858 32 HOH HOH . D 4 HOH A 59 859 63 HOH HOH . D 4 HOH A 60 860 45 HOH HOH . D 4 HOH A 61 861 83 HOH HOH . D 4 HOH A 62 862 78 HOH HOH . D 4 HOH A 63 863 88 HOH HOH . D 4 HOH A 64 864 26 HOH HOH . D 4 HOH A 65 865 16 HOH HOH . D 4 HOH A 66 866 53 HOH HOH . D 4 HOH A 67 867 76 HOH HOH . D 4 HOH A 68 868 37 HOH HOH . D 4 HOH A 69 869 96 HOH HOH . D 4 HOH A 70 870 82 HOH HOH . D 4 HOH A 71 871 57 HOH HOH . D 4 HOH A 72 872 92 HOH HOH . D 4 HOH A 73 873 21 HOH HOH . D 4 HOH A 74 874 90 HOH HOH . D 4 HOH A 75 875 66 HOH HOH . D 4 HOH A 76 876 59 HOH HOH . D 4 HOH A 77 877 94 HOH HOH . D 4 HOH A 78 878 48 HOH HOH . D 4 HOH A 79 879 5 HOH HOH . D 4 HOH A 80 880 43 HOH HOH . D 4 HOH A 81 881 49 HOH HOH . D 4 HOH A 82 882 22 HOH HOH . D 4 HOH A 83 883 33 HOH HOH . D 4 HOH A 84 884 67 HOH HOH . D 4 HOH A 85 885 84 HOH HOH . D 4 HOH A 86 886 31 HOH HOH . D 4 HOH A 87 887 86 HOH HOH . D 4 HOH A 88 888 85 HOH HOH . D 4 HOH A 89 889 102 HOH HOH . D 4 HOH A 90 890 91 HOH HOH . D 4 HOH A 91 891 56 HOH HOH . D 4 HOH A 92 892 15 HOH HOH . D 4 HOH A 93 893 98 HOH HOH . D 4 HOH A 94 894 99 HOH HOH . D 4 HOH A 95 895 95 HOH HOH . D 4 HOH A 96 896 61 HOH HOH . D 4 HOH A 97 897 100 HOH HOH . D 4 HOH A 98 898 80 HOH HOH . D 4 HOH A 99 899 77 HOH HOH . D 4 HOH A 100 900 72 HOH HOH . D 4 HOH A 101 901 68 HOH HOH . D 4 HOH A 102 902 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 1YN . . . B 2 86.107 13.08 20.594 1 48.67 ? C12 1YN 701 A 1 HETATM 2 C C11 1YN . . . B 2 85.226 12.034 20.816 1 46.7 ? C11 1YN 701 A 1 HETATM 3 C C01 1YN . . . B 2 79.716 13.279 18.902 1 57.5 ? C01 1YN 701 A 1 HETATM 4 C C02 1YN . . . B 2 79.517 13.59 20.371 1 57.15 ? C02 1YN 701 A 1 HETATM 5 C C03 1YN . . . B 2 80.786 14.194 20.989 1 58.89 ? C03 1YN 701 A 1 HETATM 6 C C04 1YN . . . B 2 80.576 14.557 22.453 1 56.36 ? C04 1YN 701 A 1 HETATM 7 N N05 1YN . . . B 2 81.884 13.205 20.889 1 58.65 ? N05 1YN 701 A 1 HETATM 8 C C06 1YN . . . B 2 83.197 13.513 20.752 1 57.64 ? C06 1YN 701 A 1 HETATM 9 O O07 1YN . . . B 2 83.708 14.607 20.588 1 63.47 ? O07 1YN 701 A 1 HETATM 10 N N08 1YN . . . B 2 83.801 12.265 20.837 1 57.29 ? N08 1YN 701 A 1 HETATM 11 C C09 1YN . . . B 2 82.837 11.292 20.98 1 58.23 ? C09 1YN 701 A 1 HETATM 12 N N10 1YN . . . B 2 81.619 11.865 21.014 1 57.18 ? N10 1YN 701 A 1 HETATM 13 C C13 1YN . . . B 2 87.472 12.854 20.594 1 46.1 ? C13 1YN 701 A 1 HETATM 14 C C14 1YN . . . B 2 87.977 11.577 20.817 1 47.42 ? C14 1YN 701 A 1 HETATM 15 C C15 1YN . . . B 2 87.086 10.544 21.085 1 50.42 ? C15 1YN 701 A 1 HETATM 16 C C16 1YN . . . B 2 85.722 10.769 21.073 1 49.1 ? C16 1YN 701 A 1 HETATM 17 N N17 1YN . . . B 2 89.316 11.308 20.621 1 43.24 ? N17 1YN 701 A 1 HETATM 18 C C18 1YN . . . B 2 90.358 12.328 20.737 1 39.69 ? C18 1YN 701 A 1 HETATM 19 C C19 1YN . . . B 2 91.462 12.042 19.725 1 41.37 ? C19 1YN 701 A 1 HETATM 20 N N20 1YN . . . B 2 91.955 10.663 19.837 1 46.98 ? N20 1YN 701 A 1 HETATM 21 C C21 1YN . . . B 2 90.909 9.636 19.881 1 44.67 ? C21 1YN 701 A 1 HETATM 22 C C22 1YN . . . B 2 89.856 9.983 20.917 1 45.48 ? C22 1YN 701 A 1 HETATM 23 C C23 1YN . . . B 2 93.112 10.321 19.149 1 41.45 ? C23 1YN 701 A 1 HETATM 24 C C24 1YN . . . B 2 93.747 11.244 18.332 1 39.79 ? C24 1YN 701 A 1 HETATM 25 C C25 1YN . . . B 2 94.914 10.916 17.668 1 37.26 ? C25 1YN 701 A 1 HETATM 26 C C26 1YN . . . B 2 95.457 9.657 17.813 1 33.75 ? C26 1YN 701 A 1 HETATM 27 C C27 1YN . . . B 2 94.842 8.727 18.628 1 36.81 ? C27 1YN 701 A 1 HETATM 28 C C28 1YN . . . B 2 93.672 9.057 19.288 1 39.63 ? C28 1YN 701 A 1 HETATM 29 O O29 1YN . . . B 2 96.58 9.397 17.07 1 41.61 ? O29 1YN 701 A 1 HETATM 30 C C30 1YN . . . B 2 97.188 8.105 17.176 1 42.33 ? C30 1YN 701 A 1 HETATM 31 C C31 1YN . . . B 2 98.234 7.986 16.107 1 34.57 ? C31 1YN 701 A 1 HETATM 32 C C32 1YN . . . B 2 97.818 8.641 14.822 1 39.69 ? C32 1YN 701 A 1 HETATM 33 O O33 1YN . . . B 2 98.196 9.983 14.997 1 37.78 ? O33 1YN 701 A 1 HETATM 34 C C34 1YN . . . B 2 99.387 9.98 15.766 1 36.55 ? C34 1YN 701 A 1 HETATM 35 O O35 1YN . . . B 2 99.416 8.734 16.466 1 33.69 ? O35 1YN 701 A 1 HETATM 36 C C36 1YN . . . B 2 99.266 11.111 16.826 1 35.65 ? C36 1YN 701 A 1 HETATM 37 N N37 1YN . . . B 2 100.583 11.423 17.348 1 35.54 ? N37 1YN 701 A 1 HETATM 38 C C38 1YN . . . B 2 101.403 10.673 18.067 1 30.19 ? C38 1YN 701 A 1 HETATM 39 N N39 1YN . . . B 2 102.547 11.277 18.259 1 32.17 ? N39 1YN 701 A 1 HETATM 40 C C40 1YN . . . B 2 102.367 12.445 17.618 1 30.19 ? C40 1YN 701 A 1 HETATM 41 N N41 1YN . . . B 2 101.194 12.601 17.051 1 34.36 ? N41 1YN 701 A 1 HETATM 42 C C42 1YN . . . B 2 100.498 10.102 14.743 1 34.78 ? C42 1YN 701 A 1 HETATM 43 C C43 1YN . . . B 2 100.601 11.194 13.875 1 35.95 ? C43 1YN 701 A 1 HETATM 44 C C44 1YN . . . B 2 101.616 11.283 12.939 1 35.99 ? C44 1YN 701 A 1 HETATM 45 C C45 1YN . . . B 2 102.521 10.25 12.846 1 35.21 ? C45 1YN 701 A 1 HETATM 46 C C46 1YN . . . B 2 102.451 9.154 13.674 1 33.17 ? C46 1YN 701 A 1 HETATM 47 C C47 1YN . . . B 2 101.447 9.093 14.623 1 33.16 ? C47 1YN 701 A 1 HETATM 48 CL CL8 1YN . . . B 2 103.775 10.337 11.646 1 34.45 ? CL8 1YN 701 A 1 HETATM 49 CL CL9 1YN . . . B 2 99.422 12.472 13.873 1 37.05 ? CL9 1YN 701 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 49 #