data_5ESX # _model_server_result.job_id VNtouUphEicP0MPzPWNvsg _model_server_result.datetime_utc '2024-11-28 16:42:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5esx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 5ESX # _exptl.entry_id 5ESX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ESX _cell.length_a 67.461 _cell.length_b 67.538 _cell.length_c 94.879 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ESX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 5ESX _atom_sites.fract_transf_matrix[1][1] 0.014823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014806 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01054 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5GP A 1 600 600 5GP 5GP . D 2 5GP B 1 601 601 5GP 5GP . E 3 HOH A 1 701 12 HOH HOH . E 3 HOH A 2 702 5 HOH HOH . E 3 HOH A 3 703 23 HOH HOH . E 3 HOH A 4 704 6 HOH HOH . E 3 HOH A 5 705 15 HOH HOH . E 3 HOH A 6 706 26 HOH HOH . E 3 HOH A 7 707 20 HOH HOH . E 3 HOH A 8 708 17 HOH HOH . E 3 HOH A 9 709 21 HOH HOH . E 3 HOH A 10 710 13 HOH HOH . E 3 HOH A 11 711 7 HOH HOH . E 3 HOH A 12 712 8 HOH HOH . E 3 HOH A 13 713 28 HOH HOH . F 3 HOH B 1 701 25 HOH HOH . F 3 HOH B 2 702 9 HOH HOH . F 3 HOH B 3 703 4 HOH HOH . F 3 HOH B 4 704 2 HOH HOH . F 3 HOH B 5 705 11 HOH HOH . F 3 HOH B 6 706 27 HOH HOH . F 3 HOH B 7 707 10 HOH HOH . F 3 HOH B 8 708 19 HOH HOH . F 3 HOH B 9 709 18 HOH HOH . F 3 HOH B 10 710 14 HOH HOH . F 3 HOH B 11 711 22 HOH HOH . F 3 HOH B 12 712 16 HOH HOH . F 3 HOH B 13 713 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . D 2 9.154 10.222 10.709 1 73.22 ? P 5GP 601 B 1 HETATM 2 O O1P 5GP . . . D 2 8.618 10.447 9.298 1 77.6 ? O1P 5GP 601 B 1 HETATM 3 O O2P 5GP . . . D 2 10.276 11.132 11.137 1 74.98 ? O2P 5GP 601 B 1 HETATM 4 O O3P 5GP . . . D 2 8.108 10.082 11.771 1 70.61 ? O3P 5GP 601 B 1 HETATM 5 O O5' 5GP . . . D 2 9.858 8.777 10.651 1 75.66 ? O5' 5GP 601 B 1 HETATM 6 C C5' 5GP . . . D 2 9.186 7.65 10.093 1 77.24 ? C5' 5GP 601 B 1 HETATM 7 C C4' 5GP . . . D 2 10.246 6.595 9.867 1 73.72 ? C4' 5GP 601 B 1 HETATM 8 O O4' 5GP . . . D 2 10.617 6.088 11.155 1 77.26 ? O4' 5GP 601 B 1 HETATM 9 C C3' 5GP . . . D 2 9.719 5.434 9.035 1 72.36 ? C3' 5GP 601 B 1 HETATM 10 O O3' 5GP . . . D 2 10.1 5.502 7.648 1 61.14 ? O3' 5GP 601 B 1 HETATM 11 C C2' 5GP . . . D 2 10.311 4.225 9.737 1 74.44 ? C2' 5GP 601 B 1 HETATM 12 O O2' 5GP . . . D 2 11.517 3.818 9.079 1 80.68 ? O2' 5GP 601 B 1 HETATM 13 C C1' 5GP . . . D 2 10.582 4.66 11.182 1 73.64 ? C1' 5GP 601 B 1 HETATM 14 N N9 5GP . . . D 2 9.463 4.172 12.035 1 73.56 ? N9 5GP 601 B 1 HETATM 15 C C8 5GP . . . D 2 8.497 4.902 12.638 1 72.7 ? C8 5GP 601 B 1 HETATM 16 N N7 5GP . . . D 2 7.622 4.099 13.311 1 70.93 ? N7 5GP 601 B 1 HETATM 17 C C5 5GP . . . D 2 8.011 2.809 13.144 1 73.5 ? C5 5GP 601 B 1 HETATM 18 C C6 5GP . . . D 2 7.568 1.431 13.565 1 72.18 ? C6 5GP 601 B 1 HETATM 19 O O6 5GP . . . D 2 6.564 1.196 14.283 1 68.25 ? O6 5GP 601 B 1 HETATM 20 N N1 5GP . . . D 2 8.304 0.389 13.148 1 72.53 ? N1 5GP 601 B 1 HETATM 21 C C2 5GP . . . D 2 9.402 0.524 12.376 1 68.58 ? C2 5GP 601 B 1 HETATM 22 N N2 5GP . . . D 2 10.087 -0.572 11.987 1 68.42 ? N2 5GP 601 B 1 HETATM 23 N N3 5GP . . . D 2 9.853 1.727 11.957 1 71.13 ? N3 5GP 601 B 1 HETATM 24 C C4 5GP . . . D 2 9.226 2.88 12.301 1 74.23 ? C4 5GP 601 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 24 #