data_5ET8 # _model_server_result.job_id rqTQojRpksXfrIT6HfpXmg _model_server_result.datetime_utc '2024-11-04 18:53:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5et8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5ET8 # _exptl.entry_id 5ET8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 6-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ET8 _cell.length_a 72.105 _cell.length_b 72.105 _cell.length_c 232.002 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ET8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id F6P _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms FRUCTOSE-6-PHOSPHATE;6-O-phosphono-beta-D-fructose;6-O-phosphono-D-fructose;6-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 F6P sing 83 n n O1 HO1 F6P sing 84 n n C1 C2 F6P sing 85 n n C1 H11 F6P sing 86 n n C1 H12 F6P sing 87 n n C2 O2 F6P sing 88 n n C2 C3 F6P sing 89 n n C2 O5 F6P sing 90 n n O2 HO2 F6P sing 91 n n C3 O3 F6P sing 92 n n C3 C4 F6P sing 93 n n C3 H3 F6P sing 94 n n O3 HO3 F6P sing 95 n n C4 O4 F6P sing 96 n n C4 C5 F6P sing 97 n n C4 H4 F6P sing 98 n n O4 HO4 F6P sing 99 n n C5 O5 F6P sing 100 n n C5 C6 F6P sing 101 n n C5 H5 F6P sing 102 n n C6 O6 F6P sing 103 n n C6 H61 F6P sing 104 n n C6 H62 F6P sing 105 n n O6 P F6P sing 106 n n P O1P F6P doub 107 n n P O2P F6P sing 108 n n P O3P F6P sing 109 n n O2P HOP2 F6P sing 110 n n O3P HOP3 F6P sing 111 n n # _pdbx_chem_comp_identifier.comp_id F6P _pdbx_chem_comp_identifier.identifier b-D-Fruf6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 5ET8 _atom_sites.fract_transf_matrix[1][1] 0.013869 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013869 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00431 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 F6P A 1 401 1 F6P F6P . C 3 HOH A 1 501 89 HOH HOH . C 3 HOH A 2 502 131 HOH HOH . C 3 HOH A 3 503 70 HOH HOH . C 3 HOH A 4 504 85 HOH HOH . C 3 HOH A 5 505 121 HOH HOH . C 3 HOH A 6 506 79 HOH HOH . C 3 HOH A 7 507 67 HOH HOH . C 3 HOH A 8 508 23 HOH HOH . C 3 HOH A 9 509 129 HOH HOH . C 3 HOH A 10 510 2 HOH HOH . C 3 HOH A 11 511 42 HOH HOH . C 3 HOH A 12 512 30 HOH HOH . C 3 HOH A 13 513 22 HOH HOH . C 3 HOH A 14 514 124 HOH HOH . C 3 HOH A 15 515 61 HOH HOH . C 3 HOH A 16 516 69 HOH HOH . C 3 HOH A 17 517 36 HOH HOH . C 3 HOH A 18 518 11 HOH HOH . C 3 HOH A 19 519 84 HOH HOH . C 3 HOH A 20 520 6 HOH HOH . C 3 HOH A 21 521 96 HOH HOH . C 3 HOH A 22 522 40 HOH HOH . C 3 HOH A 23 523 7 HOH HOH . C 3 HOH A 24 524 46 HOH HOH . C 3 HOH A 25 525 72 HOH HOH . C 3 HOH A 26 526 49 HOH HOH . C 3 HOH A 27 527 37 HOH HOH . C 3 HOH A 28 528 107 HOH HOH . C 3 HOH A 29 529 5 HOH HOH . C 3 HOH A 30 530 19 HOH HOH . C 3 HOH A 31 531 4 HOH HOH . C 3 HOH A 32 532 33 HOH HOH . C 3 HOH A 33 533 63 HOH HOH . C 3 HOH A 34 534 53 HOH HOH . C 3 HOH A 35 535 27 HOH HOH . C 3 HOH A 36 536 82 HOH HOH . C 3 HOH A 37 537 94 HOH HOH . C 3 HOH A 38 538 3 HOH HOH . C 3 HOH A 39 539 130 HOH HOH . C 3 HOH A 40 540 52 HOH HOH . C 3 HOH A 41 541 64 HOH HOH . C 3 HOH A 42 542 14 HOH HOH . C 3 HOH A 43 543 31 HOH HOH . C 3 HOH A 44 544 57 HOH HOH . C 3 HOH A 45 545 41 HOH HOH . C 3 HOH A 46 546 44 HOH HOH . C 3 HOH A 47 547 17 HOH HOH . C 3 HOH A 48 548 39 HOH HOH . C 3 HOH A 49 549 12 HOH HOH . C 3 HOH A 50 550 78 HOH HOH . C 3 HOH A 51 551 128 HOH HOH . C 3 HOH A 52 552 1 HOH HOH . C 3 HOH A 53 553 32 HOH HOH . C 3 HOH A 54 554 104 HOH HOH . C 3 HOH A 55 555 51 HOH HOH . C 3 HOH A 56 556 102 HOH HOH . C 3 HOH A 57 557 13 HOH HOH . C 3 HOH A 58 558 24 HOH HOH . C 3 HOH A 59 559 66 HOH HOH . C 3 HOH A 60 560 111 HOH HOH . C 3 HOH A 61 561 9 HOH HOH . C 3 HOH A 62 562 10 HOH HOH . C 3 HOH A 63 563 123 HOH HOH . C 3 HOH A 64 564 50 HOH HOH . C 3 HOH A 65 565 20 HOH HOH . C 3 HOH A 66 566 106 HOH HOH . C 3 HOH A 67 567 8 HOH HOH . C 3 HOH A 68 568 26 HOH HOH . C 3 HOH A 69 569 116 HOH HOH . C 3 HOH A 70 570 25 HOH HOH . C 3 HOH A 71 571 43 HOH HOH . C 3 HOH A 72 572 105 HOH HOH . C 3 HOH A 73 573 21 HOH HOH . C 3 HOH A 74 574 71 HOH HOH . C 3 HOH A 75 575 108 HOH HOH . C 3 HOH A 76 576 125 HOH HOH . C 3 HOH A 77 577 34 HOH HOH . C 3 HOH A 78 578 47 HOH HOH . C 3 HOH A 79 579 48 HOH HOH . C 3 HOH A 80 580 56 HOH HOH . C 3 HOH A 81 581 15 HOH HOH . C 3 HOH A 82 582 92 HOH HOH . C 3 HOH A 83 583 38 HOH HOH . C 3 HOH A 84 584 101 HOH HOH . C 3 HOH A 85 585 58 HOH HOH . C 3 HOH A 86 586 91 HOH HOH . C 3 HOH A 87 587 16 HOH HOH . C 3 HOH A 88 588 65 HOH HOH . C 3 HOH A 89 589 86 HOH HOH . C 3 HOH A 90 590 35 HOH HOH . C 3 HOH A 91 591 76 HOH HOH . C 3 HOH A 92 592 126 HOH HOH . C 3 HOH A 93 593 90 HOH HOH . C 3 HOH A 94 594 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 F6P . . . B 2 -18.407 -17.907 14.181 0.8 51.96 ? O1 F6P 401 A 1 HETATM 2 C C1 F6P . . . B 2 -17.883 -19.114 13.668 0.8 49.16 ? C1 F6P 401 A 1 HETATM 3 C C2 F6P . . . B 2 -18.275 -19.31 12.202 0.8 46.03 ? C2 F6P 401 A 1 HETATM 4 O O2 F6P . . . B 2 -17.049 -19.416 11.384 0.8 44.98 ? O2 F6P 401 A 1 HETATM 5 C C3 F6P . . . B 2 -19.154 -18.185 11.599 0.8 38.03 ? C3 F6P 401 A 1 HETATM 6 O O3 F6P . . . B 2 -18.339 -17.143 11.082 0.8 25.78 ? O3 F6P 401 A 1 HETATM 7 C C4 F6P . . . B 2 -19.961 -18.97 10.554 0.8 35.85 ? C4 F6P 401 A 1 HETATM 8 O O4 F6P . . . B 2 -21.202 -18.393 10.278 0.8 32.73 ? O4 F6P 401 A 1 HETATM 9 C C5 F6P . . . B 2 -20.198 -20.314 11.24 0.8 39.96 ? C5 F6P 401 A 1 HETATM 10 O O5 F6P . . . B 2 -19.097 -20.508 12.121 0.8 43.48 ? O5 F6P 401 A 1 HETATM 11 C C6 F6P . . . B 2 -20.283 -21.487 10.271 0.8 38.74 ? C6 F6P 401 A 1 HETATM 12 O O6 F6P . . . B 2 -20.283 -22.677 11.026 0.8 36.17 ? O6 F6P 401 A 1 HETATM 13 P P F6P . . . B 2 -20.629 -24.087 10.326 0.8 33.97 ? P F6P 401 A 1 HETATM 14 O O1P F6P . . . B 2 -21.488 -23.835 9.132 0.8 26.4 ? O1P F6P 401 A 1 HETATM 15 O O2P F6P . . . B 2 -21.252 -25.039 11.349 0.8 29.58 ? O2P F6P 401 A 1 HETATM 16 O O3P F6P . . . B 2 -19.243 -24.553 9.92 0.8 32.93 ? O3P F6P 401 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #