data_5ETM # _model_server_result.job_id '_Rjr1vYLhNcdSmodxkLnrA' _model_server_result.datetime_utc '2024-11-22 22:23:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5etm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5ETM # _exptl.entry_id 5ETM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 291.304 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-azanyl-8-[(4-fluorophenyl)methylsulfanyl]-1,7-dihydropurin-6-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.49 _cell.angle_gamma 90 _cell.entry_id 5ETM _cell.length_a 35.763 _cell.length_b 57.631 _cell.length_c 38.407 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ETM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 30 A GLY 26 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc2 A O ILE 32 A ILE 28 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc3 A O SER 35 A SER 31 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc4 A O LEU 38 A LEU 34 1_555 F NA NA . A NA 205 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc5 A OD1 ASP 53 A ASP 49 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc6 A OD2 ASP 53 A ASP 49 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc7 A OE1 GLU 91 A GLU 87 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.075 ? metalc ? metalc8 A OE2 GLU 91 A GLU 87 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc9 A OD1 ASP 99 A ASP 95 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc10 A OD2 ASP 99 A ASP 95 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc11 A OD1 ASP 101 A ASP 97 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc12 A OD2 ASP 101 A ASP 97 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc13 A OE2 GLU 113 A GLU 109 1_555 G NA NA . A NA 206 2_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc14 C O1B APC . A APC 202 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc15 C O1A APC . A APC 202 1_555 D CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc16 C O2G APC . A APC 202 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc17 C O1B APC . A APC 202 1_555 E CA CA . A CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc18 D CA CA . A CA 203 1_555 J O HOH . A HOH 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc19 D CA CA . A CA 203 1_555 J O HOH . A HOH 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc20 E CA CA . A CA 204 1_555 J O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc21 E CA CA . A CA 204 1_555 J O HOH . A HOH 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc22 F NA NA . A NA 205 1_555 J O HOH . A HOH 308 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc23 F NA NA . A NA 205 1_555 J O HOH . A HOH 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc24 G NA NA . A NA 206 1_555 J O HOH . A HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc25 G NA NA . A NA 206 1_555 J O HOH . A HOH 353 2_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? # _chem_comp.formula 'C12 H10 F N5 O S' _chem_comp.formula_weight 291.304 _chem_comp.id 5RW _chem_comp.mon_nstd_flag . _chem_comp.name 2-azanyl-8-[(4-fluorophenyl)methylsulfanyl]-1,7-dihydropurin-6-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C5 5RW sing 1 n n C12 S20 5RW sing 2 n n C2 C4 5RW doub 3 n y C2 C5 5RW sing 4 n y C4 C6 5RW sing 5 n y C5 C1 5RW doub 6 n y C6 F19 5RW sing 7 n n C6 C3 5RW doub 8 n y C1 C3 5RW sing 9 n y O18 C10 5RW doub 10 n n S20 C9 5RW sing 11 n n N13 C9 5RW sing 12 n y N13 C7 5RW sing 13 n y C9 N15 5RW doub 14 n y C10 C7 5RW sing 15 n n C10 N16 5RW sing 16 n n C7 C8 5RW doub 17 n y N16 C11 5RW sing 18 n n N15 C8 5RW sing 19 n y C8 N14 5RW sing 20 n n C11 N14 5RW doub 21 n n C11 N17 5RW sing 22 n n C1 H1 5RW sing 23 n n C2 H2 5RW sing 24 n n C3 H3 5RW sing 25 n n C4 H4 5RW sing 26 n n C12 H5 5RW sing 27 n n C12 H6 5RW sing 28 n n N13 H7 5RW sing 29 n n N16 H9 5RW sing 30 n n N17 H10 5RW sing 31 n n N17 H11 5RW sing 32 n n # _atom_sites.entry_id 5ETM _atom_sites.fract_transf_matrix[1][1] 0.027962 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.013328 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017352 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028844 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5RW A 1 201 1 5RW UNL . C 3 APC A 1 202 1 APC APC . D 4 CA A 1 203 1 CA CA . E 4 CA A 1 204 2 CA CA . F 5 NA A 1 205 1 NA NA . G 5 NA A 1 206 2 NA NA . H 6 CL A 1 207 1 CL CL . I 6 CL A 1 208 2 CL CL . J 7 HOH A 1 301 30 HOH HOH . J 7 HOH A 2 302 55 HOH HOH . J 7 HOH A 3 303 32 HOH HOH . J 7 HOH A 4 304 23 HOH HOH . J 7 HOH A 5 305 10 HOH HOH . J 7 HOH A 6 306 38 HOH HOH . J 7 HOH A 7 307 44 HOH HOH . J 7 HOH A 8 308 4 HOH HOH . J 7 HOH A 9 309 26 HOH HOH . J 7 HOH A 10 310 53 HOH HOH . J 7 HOH A 11 311 54 HOH HOH . J 7 HOH A 12 312 63 HOH HOH . J 7 HOH A 13 313 69 HOH HOH . J 7 HOH A 14 314 66 HOH HOH . J 7 HOH A 15 315 6 HOH HOH . J 7 HOH A 16 316 31 HOH HOH . J 7 HOH A 17 317 36 HOH HOH . J 7 HOH A 18 318 48 HOH HOH . J 7 HOH A 19 319 67 HOH HOH . J 7 HOH A 20 320 76 HOH HOH . J 7 HOH A 21 321 58 HOH HOH . J 7 HOH A 22 322 50 HOH HOH . J 7 HOH A 23 323 72 HOH HOH . J 7 HOH A 24 324 81 HOH HOH . J 7 HOH A 25 325 46 HOH HOH . J 7 HOH A 26 326 82 HOH HOH . J 7 HOH A 27 327 45 HOH HOH . J 7 HOH A 28 328 33 HOH HOH . J 7 HOH A 29 329 41 HOH HOH . J 7 HOH A 30 330 65 HOH HOH . J 7 HOH A 31 331 8 HOH HOH . J 7 HOH A 32 332 3 HOH HOH . J 7 HOH A 33 333 34 HOH HOH . J 7 HOH A 34 334 20 HOH HOH . J 7 HOH A 35 335 77 HOH HOH . J 7 HOH A 36 336 18 HOH HOH . J 7 HOH A 37 337 28 HOH HOH . J 7 HOH A 38 338 2 HOH HOH . J 7 HOH A 39 339 24 HOH HOH . J 7 HOH A 40 340 11 HOH HOH . J 7 HOH A 41 341 13 HOH HOH . J 7 HOH A 42 342 60 HOH HOH . J 7 HOH A 43 343 80 HOH HOH . J 7 HOH A 44 344 59 HOH HOH . J 7 HOH A 45 345 16 HOH HOH . J 7 HOH A 46 346 70 HOH HOH . J 7 HOH A 47 347 7 HOH HOH . J 7 HOH A 48 348 56 HOH HOH . J 7 HOH A 49 349 39 HOH HOH . J 7 HOH A 50 350 27 HOH HOH . J 7 HOH A 51 351 87 HOH HOH . J 7 HOH A 52 352 40 HOH HOH . J 7 HOH A 53 353 75 HOH HOH . J 7 HOH A 54 354 61 HOH HOH . J 7 HOH A 55 355 12 HOH HOH . J 7 HOH A 56 356 9 HOH HOH . J 7 HOH A 57 357 5 HOH HOH . J 7 HOH A 58 358 43 HOH HOH . J 7 HOH A 59 359 47 HOH HOH . J 7 HOH A 60 360 15 HOH HOH . J 7 HOH A 61 361 68 HOH HOH . J 7 HOH A 62 362 78 HOH HOH . J 7 HOH A 63 363 19 HOH HOH . J 7 HOH A 64 364 88 HOH HOH . J 7 HOH A 65 365 52 HOH HOH . J 7 HOH A 66 366 71 HOH HOH . J 7 HOH A 67 367 21 HOH HOH . J 7 HOH A 68 368 17 HOH HOH . J 7 HOH A 69 369 29 HOH HOH . J 7 HOH A 70 370 25 HOH HOH . J 7 HOH A 71 371 51 HOH HOH . J 7 HOH A 72 372 57 HOH HOH . J 7 HOH A 73 373 83 HOH HOH . J 7 HOH A 74 374 14 HOH HOH . J 7 HOH A 75 375 84 HOH HOH . J 7 HOH A 76 376 64 HOH HOH . J 7 HOH A 77 377 22 HOH HOH . J 7 HOH A 78 378 86 HOH HOH . J 7 HOH A 79 379 89 HOH HOH . J 7 HOH A 80 380 90 HOH HOH . J 7 HOH A 81 381 62 HOH HOH . J 7 HOH A 82 382 37 HOH HOH . J 7 HOH A 83 383 1 HOH HOH . J 7 HOH A 84 384 85 HOH HOH . J 7 HOH A 85 385 73 HOH HOH . J 7 HOH A 86 386 79 HOH HOH . J 7 HOH A 87 387 74 HOH HOH . J 7 HOH A 88 388 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 5RW . . . B 2 -0.103 -2.349 0.842 1 19.41 ? C1 5RW 201 A 1 HETATM 2 C C2 5RW . . . B 2 1.195 -4.267 0.417 1 18.68 ? C2 5RW 201 A 1 HETATM 3 C C3 5RW . . . B 2 1.027 -1.57 0.984 1 22.68 ? C3 5RW 201 A 1 HETATM 4 C C4 5RW . . . B 2 2.332 -3.483 0.544 1 20.48 ? C4 5RW 201 A 1 HETATM 5 C C5 5RW . . . B 2 -0.059 -3.692 0.568 1 19.86 ? C5 5RW 201 A 1 HETATM 6 C C6 5RW . . . B 2 2.255 -2.15 0.832 1 22.31 ? C6 5RW 201 A 1 HETATM 7 C C7 5RW . . . B 2 -0.167 -8.343 2.353 1 9.53 ? C7 5RW 201 A 1 HETATM 8 C C8 5RW . . . B 2 0.392 -7.486 3.283 1 11.4 ? C8 5RW 201 A 1 HETATM 9 C C9 5RW . . . B 2 -1.268 -6.516 2.18 1 13.9 ? C9 5RW 201 A 1 HETATM 10 C C10 5RW . . . B 2 0.333 -9.662 2.196 1 9.07 ? C10 5RW 201 A 1 HETATM 11 C C11 5RW . . . B 2 1.91 -8.859 4.024 1 8.97 ? C11 5RW 201 A 1 HETATM 12 C C12 5RW . . . B 2 -1.326 -4.547 0.365 1 20.3 ? C12 5RW 201 A 1 HETATM 13 N N13 5RW . . . B 2 -1.219 -7.731 1.688 1 13.23 ? N13 5RW 201 A 1 HETATM 14 N N14 5RW . . . B 2 1.443 -7.666 4.162 1 8.78 ? N14 5RW 201 A 1 HETATM 15 N N15 5RW . . . B 2 -0.317 -6.326 3.155 1 13.71 ? N15 5RW 201 A 1 HETATM 16 N N16 5RW . . . B 2 1.433 -9.795 3.109 1 8.66 ? N16 5RW 201 A 1 HETATM 17 N N17 5RW . . . B 2 2.975 -9.266 4.799 1 8.65 ? N17 5RW 201 A 1 HETATM 18 O O18 5RW . . . B 2 -0.086 -10.539 1.397 1 9.16 ? O18 5RW 201 A 1 HETATM 19 F F19 5RW . . . B 2 3.355 -1.385 0.978 1 32.12 ? F19 5RW 201 A 1 HETATM 20 S S20 5RW . . . B 2 -2.395 -5.263 1.667 1 19.9 ? S20 5RW 201 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #