data_5ETV # _model_server_result.job_id HktDTNkWWdD0H3vn5ANx4w _model_server_result.datetime_utc '2024-11-22 13:47:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5etv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5ETV # _exptl.entry_id 5ETV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 380.22 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-azanyl-8-[2-(4-bromophenyl)-2-oxidanylidene-ethyl]sulfanyl-1,9-dihydropurin-6-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ETV _cell.length_a 84.25 _cell.length_b 84.25 _cell.length_c 52.411 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ETV _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 82 A GLU 79 1_555 A N CSO 83 A CSO 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C CSO 83 A CSO 80 1_555 A N LEU 84 A LEU 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OD2 ASP 98 A ASP 95 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc2 A OD1 ASP 98 A ASP 95 1_555 E MG MG . A MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc3 A OD2 ASP 100 A ASP 97 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc4 A OD1 ASP 100 A ASP 97 1_555 E MG MG . A MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc5 B O1G APC . A APC 201 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc6 B O1B APC . A APC 201 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc7 B O1B APC . A APC 201 1_555 E MG MG . A MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc8 B O1A APC . A APC 201 1_555 E MG MG . A MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc9 D MG MG . A MG 203 1_555 G O HOH . A HOH 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc10 D MG MG . A MG 203 1_555 G O HOH . A HOH 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc11 E MG MG . A MG 204 1_555 G O HOH . A HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc12 E MG MG . A MG 204 1_555 G O HOH . A HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? # _chem_comp.formula 'C13 H10 Br N5 O2 S' _chem_comp.formula_weight 380.22 _chem_comp.id 5RZ _chem_comp.mon_nstd_flag . _chem_comp.name 2-azanyl-8-[2-(4-bromophenyl)-2-oxidanylidene-ethyl]sulfanyl-1,9-dihydropurin-6-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N18 C10 5RZ sing 1 n n N14 C10 5RZ doub 2 n n N14 C8 5RZ sing 3 n n C10 N16 5RZ sing 4 n n C8 N15 5RZ sing 5 n y C8 C6 5RZ doub 6 n y N15 C11 5RZ sing 7 n y N16 C9 5RZ sing 8 n n C6 C9 5RZ sing 9 n n C6 N17 5RZ sing 10 n y C9 O20 5RZ doub 11 n n C11 N17 5RZ doub 12 n y C11 S21 5RZ sing 13 n n S21 C13 5RZ sing 14 n n C3 C1 5RZ doub 15 n y C3 C7 5RZ sing 16 n y C1 C5 5RZ sing 17 n y BR1 C7 5RZ sing 18 n n C7 C4 5RZ doub 19 n y C5 C2 5RZ doub 20 n y C5 C12 5RZ sing 21 n n C4 C2 5RZ sing 22 n y C12 C13 5RZ sing 23 n n C12 O19 5RZ doub 24 n n C1 H1 5RZ sing 25 n n C2 H2 5RZ sing 26 n n C3 H3 5RZ sing 27 n n C4 H4 5RZ sing 28 n n C13 H5 5RZ sing 29 n n C13 H6 5RZ sing 30 n n N15 H7 5RZ sing 31 n n N16 H8 5RZ sing 32 n n N18 H10 5RZ sing 33 n n N18 H11 5RZ sing 34 n n # _atom_sites.entry_id 5ETV _atom_sites.fract_transf_matrix[1][1] 0.011869 _atom_sites.fract_transf_matrix[1][2] 0.006853 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01908 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 APC A 1 201 1 APC APC . C 3 5RZ A 1 202 1 5RZ UNL . D 4 MG A 1 203 1 MG MG . E 4 MG A 1 204 2 MG MG . F 5 NO3 A 1 205 24 NO3 NO3 . G 6 HOH A 1 301 15 HOH HOH . G 6 HOH A 2 302 2 HOH HOH . G 6 HOH A 3 303 9 HOH HOH . G 6 HOH A 4 304 31 HOH HOH . G 6 HOH A 5 305 25 HOH HOH . G 6 HOH A 6 306 8 HOH HOH . G 6 HOH A 7 307 11 HOH HOH . G 6 HOH A 8 308 49 HOH HOH . G 6 HOH A 9 309 17 HOH HOH . G 6 HOH A 10 310 69 HOH HOH . G 6 HOH A 11 311 47 HOH HOH . G 6 HOH A 12 312 42 HOH HOH . G 6 HOH A 13 313 18 HOH HOH . G 6 HOH A 14 314 40 HOH HOH . G 6 HOH A 15 315 16 HOH HOH . G 6 HOH A 16 316 19 HOH HOH . G 6 HOH A 17 317 44 HOH HOH . G 6 HOH A 18 318 22 HOH HOH . G 6 HOH A 19 319 23 HOH HOH . G 6 HOH A 20 320 57 HOH HOH . G 6 HOH A 21 321 45 HOH HOH . G 6 HOH A 22 322 27 HOH HOH . G 6 HOH A 23 323 48 HOH HOH . G 6 HOH A 24 324 39 HOH HOH . G 6 HOH A 25 325 20 HOH HOH . G 6 HOH A 26 326 37 HOH HOH . G 6 HOH A 27 327 13 HOH HOH . G 6 HOH A 28 328 20 HOH HOH . G 6 HOH A 29 329 55 HOH HOH . G 6 HOH A 30 330 35 HOH HOH . G 6 HOH A 31 331 6 HOH HOH . G 6 HOH A 32 332 4 HOH HOH . G 6 HOH A 33 333 5 HOH HOH . G 6 HOH A 34 334 12 HOH HOH . G 6 HOH A 35 335 17 HOH HOH . G 6 HOH A 36 336 28 HOH HOH . G 6 HOH A 37 337 6 HOH HOH . G 6 HOH A 38 338 21 HOH HOH . G 6 HOH A 39 339 68 HOH HOH . G 6 HOH A 40 340 1 HOH HOH . G 6 HOH A 41 341 64 HOH HOH . G 6 HOH A 42 342 53 HOH HOH . G 6 HOH A 43 343 51 HOH HOH . G 6 HOH A 44 344 23 HOH HOH . G 6 HOH A 45 345 7 HOH HOH . G 6 HOH A 46 346 8 HOH HOH . G 6 HOH A 47 347 2 HOH HOH . G 6 HOH A 48 348 12 HOH HOH . G 6 HOH A 49 349 29 HOH HOH . G 6 HOH A 50 350 7 HOH HOH . G 6 HOH A 51 351 14 HOH HOH . G 6 HOH A 52 352 3 HOH HOH . G 6 HOH A 53 353 59 HOH HOH . G 6 HOH A 54 354 19 HOH HOH . G 6 HOH A 55 355 15 HOH HOH . G 6 HOH A 56 356 30 HOH HOH . G 6 HOH A 57 357 10 HOH HOH . G 6 HOH A 58 358 38 HOH HOH . G 6 HOH A 59 359 36 HOH HOH . G 6 HOH A 60 360 10 HOH HOH . G 6 HOH A 61 361 65 HOH HOH . G 6 HOH A 62 362 14 HOH HOH . G 6 HOH A 63 363 5 HOH HOH . G 6 HOH A 64 364 62 HOH HOH . G 6 HOH A 65 365 74 HOH HOH . G 6 HOH A 66 366 56 HOH HOH . G 6 HOH A 67 367 32 HOH HOH . G 6 HOH A 68 368 78 HOH HOH . G 6 HOH A 69 369 34 HOH HOH . G 6 HOH A 70 370 52 HOH HOH . G 6 HOH A 71 371 66 HOH HOH . G 6 HOH A 72 372 4 HOH HOH . G 6 HOH A 73 373 22 HOH HOH . G 6 HOH A 74 374 76 HOH HOH . G 6 HOH A 75 375 50 HOH HOH . G 6 HOH A 76 376 13 HOH HOH . G 6 HOH A 77 377 24 HOH HOH . G 6 HOH A 78 378 1 HOH HOH . G 6 HOH A 79 379 54 HOH HOH . G 6 HOH A 80 380 61 HOH HOH . G 6 HOH A 81 381 46 HOH HOH . G 6 HOH A 82 382 16 HOH HOH . G 6 HOH A 83 383 72 HOH HOH . G 6 HOH A 84 384 3 HOH HOH . G 6 HOH A 85 385 67 HOH HOH . G 6 HOH A 86 386 63 HOH HOH . G 6 HOH A 87 387 41 HOH HOH . G 6 HOH A 88 388 33 HOH HOH . G 6 HOH A 89 389 26 HOH HOH . G 6 HOH A 90 390 11 HOH HOH . G 6 HOH A 91 391 21 HOH HOH . G 6 HOH A 92 392 71 HOH HOH . G 6 HOH A 93 393 43 HOH HOH . G 6 HOH A 94 394 18 HOH HOH . G 6 HOH A 95 395 77 HOH HOH . G 6 HOH A 96 396 75 HOH HOH . G 6 HOH A 97 397 9 HOH HOH . G 6 HOH A 98 398 73 HOH HOH . G 6 HOH A 99 399 58 HOH HOH . G 6 HOH A 100 400 70 HOH HOH . G 6 HOH A 101 401 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 5RZ . . . C 3 -7.529 40.702 23.138 1 23.74 ? C1 5RZ 202 A 1 HETATM 2 C C2 5RZ . . . C 3 -7.134 38.944 21.577 1 21.47 ? C2 5RZ 202 A 1 HETATM 3 C C3 5RZ . . . C 3 -6.419 40.289 23.848 1 22.2 ? C3 5RZ 202 A 1 HETATM 4 C C4 5RZ . . . C 3 -6.031 38.528 22.298 1 20.96 ? C4 5RZ 202 A 1 HETATM 5 C C5 5RZ . . . C 3 -7.893 40.033 21.988 1 23.45 ? C5 5RZ 202 A 1 HETATM 6 C C6 5RZ . . . C 3 -13.357 39.502 20.335 1 11.49 ? C6 5RZ 202 A 1 HETATM 7 C C7 5RZ . . . C 3 -5.67 39.216 23.443 1 25.38 ? C7 5RZ 202 A 1 HETATM 8 C C8 5RZ . . . C 3 -12.81 38.422 20.978 1 11.39 ? C8 5RZ 202 A 1 HETATM 9 C C9 5RZ . . . C 3 -14.258 39.264 19.232 1 11.19 ? C9 5RZ 202 A 1 HETATM 10 C C10 5RZ . . . C 3 -13.795 36.901 19.729 1 11.17 ? C10 5RZ 202 A 1 HETATM 11 C C11 5RZ . . . C 3 -12.087 40.271 21.852 1 14.88 ? C11 5RZ 202 A 1 HETATM 12 C C12 5RZ . . . C 3 -9.088 40.446 21.215 1 23.29 ? C12 5RZ 202 A 1 HETATM 13 C C13 5RZ . . . C 3 -9.934 41.667 21.576 1 22.65 ? C13 5RZ 202 A 1 HETATM 14 N N14 5RZ . . . C 3 -12.998 37.122 20.734 1 11.73 ? N14 5RZ 202 A 1 HETATM 15 N N15 5RZ . . . C 3 -12.001 38.921 21.972 1 13.66 ? N15 5RZ 202 A 1 HETATM 16 N N16 5RZ . . . C 3 -14.399 37.916 19.004 1 11.22 ? N16 5RZ 202 A 1 HETATM 17 N N17 5RZ . . . C 3 -12.89 40.669 20.897 1 13.77 ? N17 5RZ 202 A 1 HETATM 18 N N18 5RZ . . . C 3 -14.124 35.633 19.301 1 12.46 ? N18 5RZ 202 A 1 HETATM 19 O O19 5RZ . . . C 3 -9.411 39.755 20.265 1 24.57 ? O19 5RZ 202 A 1 HETATM 20 O O20 5RZ . . . C 3 -14.834 40.102 18.567 1 12.05 ? O20 5RZ 202 A 1 HETATM 21 S S21 5RZ . . . C 3 -11.194 41.37 22.878 1 18.63 ? S21 5RZ 202 A 1 HETATM 22 BR BR1 5RZ . . . C 3 -4.166 38.739 24.508 1 28.6 ? BR1 5RZ 202 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #