data_5ETW # _model_server_result.job_id 1Hg9MHsNYAybXP0pIlyDzg _model_server_result.datetime_utc '2024-10-20 03:43:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5etw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 5ETW # _exptl.entry_id 5ETW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ETW _cell.length_a 85.674 _cell.length_b 91.432 _cell.length_c 128.373 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ETW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 346 A HIS 346 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc2 C FE HEM . A HEM 501 1_555 D NAO XNL . A XNL 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc3 B NE2 HIS 346 B HIS 346 1_555 E FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc4 E FE HEM . B HEM 501 1_555 F NAO XNL . B XNL 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 5ETW _atom_sites.fract_transf_matrix[1][1] 0.011672 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010937 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00779 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 404 HEM HEM . D 3 XNL A 1 502 501 XNL DRG . E 2 HEM B 1 501 404 HEM HEM . F 3 XNL B 1 502 501 XNL DRG . G 4 HOH A 1 601 88 HOH HOH . G 4 HOH A 2 602 47 HOH HOH . G 4 HOH A 3 603 43 HOH HOH . G 4 HOH A 4 604 28 HOH HOH . G 4 HOH A 5 605 92 HOH HOH . G 4 HOH A 6 606 3 HOH HOH . G 4 HOH A 7 607 87 HOH HOH . G 4 HOH A 8 608 66 HOH HOH . G 4 HOH A 9 609 70 HOH HOH . G 4 HOH A 10 610 61 HOH HOH . G 4 HOH A 11 611 49 HOH HOH . G 4 HOH A 12 612 96 HOH HOH . G 4 HOH A 13 613 18 HOH HOH . G 4 HOH A 14 614 104 HOH HOH . G 4 HOH A 15 615 94 HOH HOH . G 4 HOH A 16 616 59 HOH HOH . G 4 HOH A 17 617 80 HOH HOH . G 4 HOH A 18 618 11 HOH HOH . G 4 HOH A 19 619 51 HOH HOH . G 4 HOH A 20 620 37 HOH HOH . G 4 HOH A 21 621 74 HOH HOH . G 4 HOH A 22 622 10 HOH HOH . G 4 HOH A 23 623 102 HOH HOH . G 4 HOH A 24 624 12 HOH HOH . G 4 HOH A 25 625 46 HOH HOH . G 4 HOH A 26 626 64 HOH HOH . G 4 HOH A 27 627 23 HOH HOH . G 4 HOH A 28 628 75 HOH HOH . G 4 HOH A 29 629 69 HOH HOH . G 4 HOH A 30 630 83 HOH HOH . G 4 HOH A 31 631 63 HOH HOH . G 4 HOH A 32 632 54 HOH HOH . G 4 HOH A 33 633 36 HOH HOH . G 4 HOH A 34 634 81 HOH HOH . G 4 HOH A 35 635 16 HOH HOH . G 4 HOH A 36 636 41 HOH HOH . G 4 HOH A 37 637 2 HOH HOH . G 4 HOH A 38 638 45 HOH HOH . G 4 HOH A 39 639 5 HOH HOH . G 4 HOH A 40 640 98 HOH HOH . G 4 HOH A 41 641 62 HOH HOH . G 4 HOH A 42 642 55 HOH HOH . G 4 HOH A 43 643 25 HOH HOH . G 4 HOH A 44 644 105 HOH HOH . G 4 HOH A 45 645 52 HOH HOH . G 4 HOH A 46 646 58 HOH HOH . G 4 HOH A 47 647 13 HOH HOH . G 4 HOH A 48 648 106 HOH HOH . G 4 HOH A 49 649 103 HOH HOH . H 4 HOH B 1 601 95 HOH HOH . H 4 HOH B 2 602 26 HOH HOH . H 4 HOH B 3 603 56 HOH HOH . H 4 HOH B 4 604 38 HOH HOH . H 4 HOH B 5 605 14 HOH HOH . H 4 HOH B 6 606 6 HOH HOH . H 4 HOH B 7 607 35 HOH HOH . H 4 HOH B 8 608 60 HOH HOH . H 4 HOH B 9 609 8 HOH HOH . H 4 HOH B 10 610 67 HOH HOH . H 4 HOH B 11 611 77 HOH HOH . H 4 HOH B 12 612 53 HOH HOH . H 4 HOH B 13 613 78 HOH HOH . H 4 HOH B 14 614 30 HOH HOH . H 4 HOH B 15 615 86 HOH HOH . H 4 HOH B 16 616 9 HOH HOH . H 4 HOH B 17 617 40 HOH HOH . H 4 HOH B 18 618 48 HOH HOH . H 4 HOH B 19 619 50 HOH HOH . H 4 HOH B 20 620 17 HOH HOH . H 4 HOH B 21 621 44 HOH HOH . H 4 HOH B 22 622 34 HOH HOH . H 4 HOH B 23 623 90 HOH HOH . H 4 HOH B 24 624 99 HOH HOH . H 4 HOH B 25 625 91 HOH HOH . H 4 HOH B 26 626 71 HOH HOH . H 4 HOH B 27 627 29 HOH HOH . H 4 HOH B 28 628 19 HOH HOH . H 4 HOH B 29 629 79 HOH HOH . H 4 HOH B 30 630 33 HOH HOH . H 4 HOH B 31 631 20 HOH HOH . H 4 HOH B 32 632 32 HOH HOH . H 4 HOH B 33 633 85 HOH HOH . H 4 HOH B 34 634 65 HOH HOH . H 4 HOH B 35 635 42 HOH HOH . H 4 HOH B 36 636 72 HOH HOH . H 4 HOH B 37 637 15 HOH HOH . H 4 HOH B 38 638 84 HOH HOH . H 4 HOH B 39 639 89 HOH HOH . H 4 HOH B 40 640 39 HOH HOH . H 4 HOH B 41 641 97 HOH HOH . H 4 HOH B 42 642 31 HOH HOH . H 4 HOH B 43 643 82 HOH HOH . H 4 HOH B 44 644 93 HOH HOH . H 4 HOH B 45 645 7 HOH HOH . H 4 HOH B 46 646 73 HOH HOH . H 4 HOH B 47 647 22 HOH HOH . H 4 HOH B 48 648 24 HOH HOH . H 4 HOH B 49 649 1 HOH HOH . H 4 HOH B 50 650 27 HOH HOH . H 4 HOH B 51 651 76 HOH HOH . H 4 HOH B 52 652 57 HOH HOH . H 4 HOH B 53 653 68 HOH HOH . H 4 HOH B 54 654 101 HOH HOH . H 4 HOH B 55 655 100 HOH HOH . H 4 HOH B 56 656 4 HOH HOH . H 4 HOH B 57 657 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 2 16.588 -29.077 -31.692 1 54.47 ? CHA HEM 501 B 1 HETATM 2 C CHB HEM . . . E 2 14.12 -31.455 -35.107 1 56.13 ? CHB HEM 501 B 1 HETATM 3 C CHC HEM . . . E 2 13.174 -35.02 -31.951 1 62.41 ? CHC HEM 501 B 1 HETATM 4 C CHD HEM . . . E 2 15.698 -32.671 -28.525 1 55.05 ? CHD HEM 501 B 1 HETATM 5 C C1A HEM . . . E 2 16.04 -29.425 -32.901 1 55.37 ? C1A HEM 501 B 1 HETATM 6 C C2A HEM . . . E 2 16.198 -28.694 -34.144 1 67.09 ? C2A HEM 501 B 1 HETATM 7 C C3A HEM . . . E 2 15.519 -29.358 -35.094 1 60.69 ? C3A HEM 501 B 1 HETATM 8 C C4A HEM . . . E 2 14.906 -30.518 -34.472 1 54.47 ? C4A HEM 501 B 1 HETATM 9 C CMA HEM . . . E 2 15.392 -28.98 -36.59 1 60.87 ? CMA HEM 501 B 1 HETATM 10 C CAA HEM . . . E 2 17.034 -27.395 -34.306 1 77.07 ? CAA HEM 501 B 1 HETATM 11 C CBA HEM . . . E 2 16.181 -26.193 -34.721 1 86.2 ? CBA HEM 501 B 1 HETATM 12 C CGA HEM . . . E 2 15.243 -25.784 -33.615 1 87.55 ? CGA HEM 501 B 1 HETATM 13 O O1A HEM . . . E 2 15.361 -26.33 -32.49 1 97.35 ? O1A HEM 501 B 1 HETATM 14 O O2A HEM . . . E 2 14.378 -24.903 -33.858 1 80.69 ? O2A HEM 501 B 1 HETATM 15 C C1B HEM . . . E 2 13.653 -32.631 -34.557 1 54.47 ? C1B HEM 501 B 1 HETATM 16 C C2B HEM . . . E 2 12.888 -33.653 -35.249 1 59.71 ? C2B HEM 501 B 1 HETATM 17 C C3B HEM . . . E 2 12.63 -34.638 -34.368 1 62.13 ? C3B HEM 501 B 1 HETATM 18 C C4B HEM . . . E 2 13.221 -34.266 -33.102 1 62.86 ? C4B HEM 501 B 1 HETATM 19 C CMB HEM . . . E 2 12.482 -33.559 -36.74 1 66.17 ? CMB HEM 501 B 1 HETATM 20 C CAB HEM . . . E 2 11.856 -35.968 -34.549 1 65.18 ? CAB HEM 501 B 1 HETATM 21 C CBB HEM . . . E 2 11.251 -36.341 -35.682 1 79.95 ? CBB HEM 501 B 1 HETATM 22 C C1C HEM . . . E 2 13.694 -34.659 -30.726 1 67.71 ? C1C HEM 501 B 1 HETATM 23 C C2C HEM . . . E 2 13.419 -35.295 -29.457 1 73.32 ? C2C HEM 501 B 1 HETATM 24 C C3C HEM . . . E 2 14.096 -34.66 -28.499 1 58.3 ? C3C HEM 501 B 1 HETATM 25 C C4C HEM . . . E 2 14.848 -33.583 -29.125 1 67.46 ? C4C HEM 501 B 1 HETATM 26 C CMC HEM . . . E 2 12.485 -36.504 -29.246 1 81.44 ? CMC HEM 501 B 1 HETATM 27 C CAC HEM . . . E 2 14.04 -35.072 -27.011 1 65.13 ? CAC HEM 501 B 1 HETATM 28 C CBC HEM . . . E 2 14.597 -34.358 -26.029 1 77.9 ? CBC HEM 501 B 1 HETATM 29 C C1D HEM . . . E 2 16.173 -31.502 -29.086 1 57.65 ? C1D HEM 501 B 1 HETATM 30 C C2D HEM . . . E 2 16.988 -30.504 -28.426 1 62.63 ? C2D HEM 501 B 1 HETATM 31 C C3D HEM . . . E 2 17.231 -29.521 -29.296 1 56.39 ? C3D HEM 501 B 1 HETATM 32 C C4D HEM . . . E 2 16.578 -29.845 -30.547 1 54.47 ? C4D HEM 501 B 1 HETATM 33 C CMD HEM . . . E 2 17.493 -30.574 -26.971 1 69.72 ? CMD HEM 501 B 1 HETATM 34 C CAD HEM . . . E 2 18.064 -28.254 -29.029 1 54.47 ? CAD HEM 501 B 1 HETATM 35 C CBD HEM . . . E 2 19.404 -28.413 -29.736 1 59.64 ? CBD HEM 501 B 1 HETATM 36 C CGD HEM . . . E 2 20.34 -29.219 -28.871 1 65.07 ? CGD HEM 501 B 1 HETATM 37 O O1D HEM . . . E 2 21.131 -30.014 -29.441 1 64.41 ? O1D HEM 501 B 1 HETATM 38 O O2D HEM . . . E 2 20.295 -29.076 -27.621 1 55.64 ? O2D HEM 501 B 1 HETATM 39 N NA HEM . . . E 2 15.247 -30.527 -33.132 1 54.47 ? NA HEM 501 B 1 HETATM 40 N NB HEM . . . E 2 13.837 -33.04 -33.25 1 58.57 ? NB HEM 501 B 1 HETATM 41 N NC HEM . . . E 2 14.571 -33.623 -30.482 1 62 ? NC HEM 501 B 1 HETATM 42 N ND HEM . . . E 2 15.941 -31.061 -30.378 1 55.84 ? ND HEM 501 B 1 HETATM 43 FE FE HEM . . . E 2 14.897 -32.074 -31.758 1 67.8 ? FE HEM 501 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #