data_5ETY # _model_server_result.job_id HZ-uhAYRkVXrG7JBOtSS7Q _model_server_result.datetime_utc '2025-01-02 20:54:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ety # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1402}' # _entry.id 5ETY # _exptl.entry_id 5ETY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 433.503 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[[1-(6,7-dimethoxyquinazolin-4-yl)piperidin-4-yl]methyl]-1,4-dihydroquinazolin-2-one _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ETY _cell.length_a 158.846 _cell.length_b 74.68 _cell.length_c 84.603 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ETY _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,M 1 1 B,G,H,N 2 1 C,I,J,O 3 1 D,K,L,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 167 A CYS 1234 1_555 E ZN ZN . A ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc2 A ND1 HIS 170 A HIS 1237 1_555 E ZN ZN . A ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc3 A SG CYS 175 A CYS 1242 1_555 E ZN ZN . A ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc4 A SG CYS 178 A CYS 1245 1_555 E ZN ZN . A ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? metalc ? metalc5 B SG CYS 167 B CYS 1234 1_555 G ZN ZN . B ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc6 B ND1 HIS 170 B HIS 1237 1_555 G ZN ZN . B ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc7 B SG CYS 175 B CYS 1242 1_555 G ZN ZN . B ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc8 C SG CYS 167 C CYS 1234 1_555 I ZN ZN . C ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc9 C ND1 HIS 170 C HIS 1237 1_555 I ZN ZN . C ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc10 C SG CYS 175 C CYS 1242 1_555 I ZN ZN . C ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc11 C SG CYS 178 C CYS 1245 1_555 I ZN ZN . C ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc12 D SG CYS 167 D CYS 1234 1_555 K ZN ZN . D ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc13 D ND1 HIS 170 D HIS 1237 1_555 K ZN ZN . D ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc14 D SG CYS 175 D CYS 1242 1_555 K ZN ZN . D ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc15 D SG CYS 178 D CYS 1245 1_555 K ZN ZN . D ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? # _chem_comp.formula 'C24 H27 N5 O3' _chem_comp.formula_weight 433.503 _chem_comp.id K56 _chem_comp.mon_nstd_flag . _chem_comp.name 3-[[1-(6,7-dimethoxyquinazolin-4-yl)piperidin-4-yl]methyl]-1,4-dihydroquinazolin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 O2 K56 sing 173 n n O2 C10 K56 sing 174 n n C10 C5 K56 doub 175 n y C10 C6 K56 sing 176 n y C5 C3 K56 sing 177 n y O1 C6 K56 sing 178 n n O1 C13 K56 sing 179 n n C6 C4 K56 doub 180 n y C3 N3 K56 doub 181 n y C3 C1 K56 sing 182 n y N3 C9 K56 sing 183 n y C4 C1 K56 sing 184 n y C1 C2 K56 doub 185 n y C9 N2 K56 doub 186 n y C2 N2 K56 sing 187 n y C2 N1 K56 sing 188 n n N1 C8 K56 sing 189 n n N1 C7 K56 sing 190 n n C8 C12 K56 sing 191 n n C7 C11 K56 sing 192 n n C12 C14 K56 sing 193 n n C11 C14 K56 sing 194 n n C21 C23 K56 doub 195 n y C21 C19 K56 sing 196 n y C14 C16 K56 sing 197 n n C17 C19 K56 sing 198 n n C17 N4 K56 sing 199 n n C23 C24 K56 sing 200 n y C16 N4 K56 sing 201 n n C19 C20 K56 doub 202 n y N4 C18 K56 sing 203 n n C24 C22 K56 doub 204 n y C20 C22 K56 sing 205 n y C20 N5 K56 sing 206 n n C18 N5 K56 sing 207 n n C18 O3 K56 doub 208 n n N5 H1 K56 sing 209 n n C22 H2 K56 sing 210 n n C24 H3 K56 sing 211 n n C23 H4 K56 sing 212 n n C21 H5 K56 sing 213 n n C17 H6 K56 sing 214 n n C17 H7 K56 sing 215 n n C16 H8 K56 sing 216 n n C16 H9 K56 sing 217 n n C14 H10 K56 sing 218 n n C11 H11 K56 sing 219 n n C11 H12 K56 sing 220 n n C7 H13 K56 sing 221 n n C7 H14 K56 sing 222 n n C12 H15 K56 sing 223 n n C12 H16 K56 sing 224 n n C8 H17 K56 sing 225 n n C8 H18 K56 sing 226 n n C9 H19 K56 sing 227 n n C5 H20 K56 sing 228 n n C15 H21 K56 sing 229 n n C15 H22 K56 sing 230 n n C15 H23 K56 sing 231 n n C4 H24 K56 sing 232 n n C13 H25 K56 sing 233 n n C13 H26 K56 sing 234 n n C13 H27 K56 sing 235 n n # _atom_sites.entry_id 5ETY _atom_sites.fract_transf_matrix[1][1] 0.006295 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01339 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01182 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ZN A 1 1401 1 ZN ZN . F 3 K56 A 1 1402 1001 K56 K56 . G 2 ZN B 1 1401 1 ZN ZN . H 3 K56 B 1 1402 1001 K56 K56 . I 2 ZN C 1 1401 1 ZN ZN . J 3 K56 C 1 1402 1001 K56 K56 . K 2 ZN D 1 1401 1 ZN ZN . L 3 K56 D 1 1402 1001 K56 K56 . M 4 HOH A 1 1501 66 HOH HOH . M 4 HOH A 2 1502 28 HOH HOH . M 4 HOH A 3 1503 71 HOH HOH . M 4 HOH A 4 1504 48 HOH HOH . M 4 HOH A 5 1505 51 HOH HOH . M 4 HOH A 6 1506 73 HOH HOH . M 4 HOH A 7 1507 25 HOH HOH . M 4 HOH A 8 1508 6 HOH HOH . M 4 HOH A 9 1509 44 HOH HOH . M 4 HOH A 10 1510 59 HOH HOH . M 4 HOH A 11 1511 37 HOH HOH . M 4 HOH A 12 1512 15 HOH HOH . M 4 HOH A 13 1513 53 HOH HOH . M 4 HOH A 14 1514 7 HOH HOH . M 4 HOH A 15 1515 43 HOH HOH . M 4 HOH A 16 1516 46 HOH HOH . M 4 HOH A 17 1517 17 HOH HOH . M 4 HOH A 18 1518 16 HOH HOH . M 4 HOH A 19 1519 61 HOH HOH . M 4 HOH A 20 1520 24 HOH HOH . N 4 HOH B 1 1501 68 HOH HOH . N 4 HOH B 2 1502 10 HOH HOH . N 4 HOH B 3 1503 41 HOH HOH . N 4 HOH B 4 1504 11 HOH HOH . N 4 HOH B 5 1505 50 HOH HOH . N 4 HOH B 6 1506 29 HOH HOH . N 4 HOH B 7 1507 38 HOH HOH . N 4 HOH B 8 1508 57 HOH HOH . N 4 HOH B 9 1509 52 HOH HOH . N 4 HOH B 10 1510 67 HOH HOH . N 4 HOH B 11 1511 70 HOH HOH . N 4 HOH B 12 1512 35 HOH HOH . N 4 HOH B 13 1513 30 HOH HOH . N 4 HOH B 14 1514 72 HOH HOH . N 4 HOH B 15 1515 26 HOH HOH . N 4 HOH B 16 1516 14 HOH HOH . N 4 HOH B 17 1517 69 HOH HOH . N 4 HOH B 18 1518 18 HOH HOH . N 4 HOH B 19 1519 27 HOH HOH . N 4 HOH B 20 1520 19 HOH HOH . O 4 HOH C 1 1501 40 HOH HOH . O 4 HOH C 2 1502 8 HOH HOH . O 4 HOH C 3 1503 49 HOH HOH . O 4 HOH C 4 1504 12 HOH HOH . O 4 HOH C 5 1505 2 HOH HOH . O 4 HOH C 6 1506 55 HOH HOH . O 4 HOH C 7 1507 36 HOH HOH . O 4 HOH C 8 1508 23 HOH HOH . O 4 HOH C 9 1509 33 HOH HOH . O 4 HOH C 10 1510 1 HOH HOH . O 4 HOH C 11 1511 56 HOH HOH . O 4 HOH C 12 1512 20 HOH HOH . O 4 HOH C 13 1513 21 HOH HOH . O 4 HOH C 14 1514 62 HOH HOH . O 4 HOH C 15 1515 22 HOH HOH . P 4 HOH D 1 1501 5 HOH HOH . P 4 HOH D 2 1502 65 HOH HOH . P 4 HOH D 3 1503 34 HOH HOH . P 4 HOH D 4 1504 54 HOH HOH . P 4 HOH D 5 1505 4 HOH HOH . P 4 HOH D 6 1506 39 HOH HOH . P 4 HOH D 7 1507 42 HOH HOH . P 4 HOH D 8 1508 60 HOH HOH . P 4 HOH D 9 1509 9 HOH HOH . P 4 HOH D 10 1510 58 HOH HOH . P 4 HOH D 11 1511 64 HOH HOH . P 4 HOH D 12 1512 3 HOH HOH . P 4 HOH D 13 1513 45 HOH HOH . P 4 HOH D 14 1514 31 HOH HOH . P 4 HOH D 15 1515 32 HOH HOH . P 4 HOH D 16 1516 74 HOH HOH . P 4 HOH D 17 1517 13 HOH HOH . P 4 HOH D 18 1518 47 HOH HOH . P 4 HOH D 19 1519 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 K56 . . . H 3 -87.019 23.51 -21.642 1 40.64 ? O3 K56 1402 B 1 HETATM 2 C C18 K56 . . . H 3 -86.645 24.432 -20.913 1 40.4 ? C18 K56 1402 B 1 HETATM 3 N N5 K56 . . . H 3 -85.507 25.028 -21.284 1 41.23 ? N5 K56 1402 B 1 HETATM 4 C C20 K56 . . . H 3 -84.954 26.078 -20.58 1 43.38 ? C20 K56 1402 B 1 HETATM 5 C C22 K56 . . . H 3 -83.779 26.648 -21.029 1 44.83 ? C22 K56 1402 B 1 HETATM 6 C C24 K56 . . . H 3 -83.22 27.704 -20.307 1 47.09 ? C24 K56 1402 B 1 HETATM 7 C C23 K56 . . . H 3 -83.827 28.156 -19.143 1 47.59 ? C23 K56 1402 B 1 HETATM 8 C C21 K56 . . . H 3 -85.012 27.57 -18.716 1 46.78 ? C21 K56 1402 B 1 HETATM 9 C C19 K56 . . . H 3 -85.591 26.531 -19.426 1 43.87 ? C19 K56 1402 B 1 HETATM 10 C C17 K56 . . . H 3 -86.869 25.912 -18.955 1 42.01 ? C17 K56 1402 B 1 HETATM 11 N N4 K56 . . . H 3 -87.313 24.838 -19.799 1 39.68 ? N4 K56 1402 B 1 HETATM 12 C C16 K56 . . . H 3 -88.502 24.11 -19.373 1 37.7 ? C16 K56 1402 B 1 HETATM 13 C C14 K56 . . . H 3 -88.007 22.764 -18.739 1 34.77 ? C14 K56 1402 B 1 HETATM 14 C C11 K56 . . . H 3 -89.06 21.73 -18.342 1 33.84 ? C11 K56 1402 B 1 HETATM 15 C C7 K56 . . . H 3 -88.514 20.446 -17.654 1 32.65 ? C7 K56 1402 B 1 HETATM 16 C C12 K56 . . . H 3 -87.155 22.935 -17.479 1 34.95 ? C12 K56 1402 B 1 HETATM 17 C C8 K56 . . . H 3 -86.428 21.644 -17.097 1 33.19 ? C8 K56 1402 B 1 HETATM 18 N N1 K56 . . . H 3 -87.417 20.669 -16.689 1 32.62 ? N1 K56 1402 B 1 HETATM 19 C C2 K56 . . . H 3 -87.17 19.842 -15.621 1 32.26 ? C2 K56 1402 B 1 HETATM 20 N N2 K56 . . . H 3 -87.327 18.507 -15.818 1 31.39 ? N2 K56 1402 B 1 HETATM 21 C C9 K56 . . . H 3 -87.084 17.683 -14.797 1 31.47 ? C9 K56 1402 B 1 HETATM 22 N N3 K56 . . . H 3 -86.696 18.01 -13.572 1 32.39 ? N3 K56 1402 B 1 HETATM 23 C C3 K56 . . . H 3 -86.523 19.32 -13.347 1 33.06 ? C3 K56 1402 B 1 HETATM 24 C C1 K56 . . . H 3 -86.745 20.303 -14.335 1 33.09 ? C1 K56 1402 B 1 HETATM 25 C C5 K56 . . . H 3 -86.119 19.709 -12.067 1 34.25 ? C5 K56 1402 B 1 HETATM 26 C C10 K56 . . . H 3 -85.911 21.049 -11.71 1 35.43 ? C10 K56 1402 B 1 HETATM 27 O O2 K56 . . . H 3 -85.513 21.509 -10.467 1 37.48 ? O2 K56 1402 B 1 HETATM 28 C C15 K56 . . . H 3 -84.919 20.65 -9.516 1 37.95 ? C15 K56 1402 B 1 HETATM 29 C C6 K56 . . . H 3 -86.137 22.047 -12.666 1 35.06 ? C6 K56 1402 B 1 HETATM 30 C C4 K56 . . . H 3 -86.527 21.647 -13.95 1 34.13 ? C4 K56 1402 B 1 HETATM 31 O O1 K56 . . . H 3 -85.926 23.342 -12.253 1 36.28 ? O1 K56 1402 B 1 HETATM 32 C C13 K56 . . . H 3 -86.578 24.447 -12.829 1 37.03 ? C13 K56 1402 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 438 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #