data_5EU3 # _model_server_result.job_id VQKUi5Kw3Innu5_frS1-oA _model_server_result.datetime_utc '2024-12-03 01:18:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eu3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 5EU3 # _exptl.entry_id 5EU3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.79 _cell.angle_gamma 90 _cell.entry_id 5EU3 _cell.length_a 52.81 _cell.length_b 80.37 _cell.length_c 56.06 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EU3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 5EU3 _atom_sites.fract_transf_matrix[1][1] 0.018936 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007956 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012442 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO A 1 301 301 EDO EDO . E 5 GOL A 1 302 311 GOL GOL . F 5 GOL B 1 101 312 GOL GOL . G 6 HOH A 1 401 470 HOH HOH . G 6 HOH A 2 402 487 HOH HOH . G 6 HOH A 3 403 448 HOH HOH . G 6 HOH A 4 404 516 HOH HOH . G 6 HOH A 5 405 416 HOH HOH . G 6 HOH A 6 406 507 HOH HOH . G 6 HOH A 7 407 526 HOH HOH . G 6 HOH A 8 408 403 HOH HOH . G 6 HOH A 9 409 411 HOH HOH . G 6 HOH A 10 410 434 HOH HOH . G 6 HOH A 11 411 480 HOH HOH . G 6 HOH A 12 412 514 HOH HOH . G 6 HOH A 13 413 467 HOH HOH . G 6 HOH A 14 414 525 HOH HOH . G 6 HOH A 15 415 451 HOH HOH . G 6 HOH A 16 416 440 HOH HOH . G 6 HOH A 17 417 447 HOH HOH . G 6 HOH A 18 418 484 HOH HOH . G 6 HOH A 19 419 493 HOH HOH . G 6 HOH A 20 420 439 HOH HOH . G 6 HOH A 21 421 477 HOH HOH . G 6 HOH A 22 422 418 HOH HOH . G 6 HOH A 23 423 430 HOH HOH . G 6 HOH A 24 424 404 HOH HOH . G 6 HOH A 25 425 511 HOH HOH . G 6 HOH A 26 426 522 HOH HOH . G 6 HOH A 27 427 459 HOH HOH . G 6 HOH A 28 428 412 HOH HOH . G 6 HOH A 29 429 410 HOH HOH . G 6 HOH A 30 430 408 HOH HOH . G 6 HOH A 31 431 479 HOH HOH . G 6 HOH A 32 432 445 HOH HOH . G 6 HOH A 33 433 456 HOH HOH . G 6 HOH A 34 434 402 HOH HOH . G 6 HOH A 35 435 502 HOH HOH . G 6 HOH A 36 436 425 HOH HOH . G 6 HOH A 37 437 500 HOH HOH . G 6 HOH A 38 438 452 HOH HOH . G 6 HOH A 39 439 460 HOH HOH . G 6 HOH A 40 440 521 HOH HOH . G 6 HOH A 41 441 463 HOH HOH . G 6 HOH A 42 442 501 HOH HOH . G 6 HOH A 43 443 406 HOH HOH . G 6 HOH A 44 444 424 HOH HOH . G 6 HOH A 45 445 494 HOH HOH . G 6 HOH A 46 446 510 HOH HOH . G 6 HOH A 47 447 482 HOH HOH . G 6 HOH A 48 448 442 HOH HOH . G 6 HOH A 49 449 441 HOH HOH . G 6 HOH A 50 450 446 HOH HOH . G 6 HOH A 51 451 472 HOH HOH . G 6 HOH A 52 452 414 HOH HOH . G 6 HOH A 53 453 413 HOH HOH . G 6 HOH A 54 454 423 HOH HOH . G 6 HOH A 55 455 465 HOH HOH . G 6 HOH A 56 456 443 HOH HOH . G 6 HOH A 57 457 513 HOH HOH . G 6 HOH A 58 458 517 HOH HOH . G 6 HOH A 59 459 462 HOH HOH . G 6 HOH A 60 460 419 HOH HOH . G 6 HOH A 61 461 427 HOH HOH . G 6 HOH A 62 462 478 HOH HOH . G 6 HOH A 63 463 505 HOH HOH . G 6 HOH A 64 464 409 HOH HOH . G 6 HOH A 65 465 457 HOH HOH . G 6 HOH A 66 466 458 HOH HOH . G 6 HOH A 67 467 474 HOH HOH . G 6 HOH A 68 468 490 HOH HOH . G 6 HOH A 69 469 498 HOH HOH . G 6 HOH A 70 470 415 HOH HOH . G 6 HOH A 71 471 475 HOH HOH . G 6 HOH A 72 472 483 HOH HOH . G 6 HOH A 73 473 432 HOH HOH . G 6 HOH A 74 474 469 HOH HOH . G 6 HOH A 75 475 407 HOH HOH . G 6 HOH A 76 476 449 HOH HOH . G 6 HOH A 77 477 476 HOH HOH . G 6 HOH A 78 478 471 HOH HOH . G 6 HOH A 79 479 420 HOH HOH . G 6 HOH A 80 480 435 HOH HOH . G 6 HOH A 81 481 508 HOH HOH . G 6 HOH A 82 482 518 HOH HOH . G 6 HOH A 83 483 433 HOH HOH . G 6 HOH A 84 484 504 HOH HOH . G 6 HOH A 85 485 523 HOH HOH . G 6 HOH A 86 486 489 HOH HOH . G 6 HOH A 87 487 431 HOH HOH . G 6 HOH A 88 488 488 HOH HOH . G 6 HOH A 89 489 473 HOH HOH . G 6 HOH A 90 490 497 HOH HOH . G 6 HOH A 91 491 499 HOH HOH . G 6 HOH A 92 492 426 HOH HOH . H 6 HOH B 1 201 454 HOH HOH . H 6 HOH B 2 202 422 HOH HOH . H 6 HOH B 3 203 485 HOH HOH . H 6 HOH B 4 204 495 HOH HOH . H 6 HOH B 5 205 512 HOH HOH . H 6 HOH B 6 206 455 HOH HOH . H 6 HOH B 7 207 421 HOH HOH . H 6 HOH B 8 208 461 HOH HOH . H 6 HOH B 9 209 491 HOH HOH . H 6 HOH B 10 210 436 HOH HOH . H 6 HOH B 11 211 506 HOH HOH . H 6 HOH B 12 212 438 HOH HOH . H 6 HOH B 13 213 468 HOH HOH . H 6 HOH B 14 214 453 HOH HOH . H 6 HOH B 15 215 509 HOH HOH . H 6 HOH B 16 216 486 HOH HOH . H 6 HOH B 17 217 481 HOH HOH . H 6 HOH B 18 218 401 HOH HOH . H 6 HOH B 19 219 417 HOH HOH . H 6 HOH B 20 220 437 HOH HOH . H 6 HOH B 21 221 450 HOH HOH . H 6 HOH B 22 222 464 HOH HOH . H 6 HOH B 23 223 524 HOH HOH . H 6 HOH B 24 224 492 HOH HOH . H 6 HOH B 25 225 519 HOH HOH . H 6 HOH B 26 226 503 HOH HOH . H 6 HOH B 27 227 466 HOH HOH . H 6 HOH B 28 228 444 HOH HOH . H 6 HOH B 29 229 515 HOH HOH . H 6 HOH B 30 230 429 HOH HOH . H 6 HOH B 31 231 496 HOH HOH . H 6 HOH B 32 232 520 HOH HOH . I 6 HOH C 1 101 428 HOH HOH . I 6 HOH C 2 102 405 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 7.395 16.493 59.345 1 44.05 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . E 5 8.413 15.449 59.374 1 46.49 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . E 5 5.957 15.941 59.158 1 42.49 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . E 5 5.435 15.465 60.406 1 50.73 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . E 5 4.883 16.892 58.598 1 40.62 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . E 5 3.946 17.357 59.583 1 34.29 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #