data_5EU4 # _model_server_result.job_id 2EXMcFPAnLVDoQ5NDE2PkA _model_server_result.datetime_utc '2024-12-01 04:09:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eu4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":302}' # _entry.id 5EU4 # _exptl.entry_id 5EU4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.81 _cell.angle_gamma 63.84 _cell.entry_id 5EU4 _cell.length_a 56.08 _cell.length_b 57.63 _cell.length_c 79.93 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EU4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 software_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L,M,N,O,P,U,V,W 1 1 D,E,F,Q,R,S,T,X,Y,Z 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 L N N ? 5 M N N ? 5 P N N ? 5 Q N N ? 5 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf4 D SG CYS 101 D CYS 101 1_555 D SG CYS 164 D CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? disulf ? disulf5 D SG CYS 203 D CYS 203 1_555 D SG CYS 259 D CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? disulf ? disulf6 E SG CYS 26 E CYS 25 1_555 E SG CYS 81 E CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5EU4 _atom_sites.fract_transf_matrix[1][1] 0.017832 _atom_sites.fract_transf_matrix[1][2] -0.008759 _atom_sites.fract_transf_matrix[1][3] -0.000073 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019332 _atom_sites.fract_transf_matrix[2][3] 0.000031 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012511 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 GOL A 1 301 301 GOL GOL . H 5 EDO A 1 302 313 EDO EDO . I 6 SO4 A 1 303 321 SO4 SO4 . J 6 SO4 A 1 304 325 SO4 SO4 . K 6 SO4 A 1 305 327 SO4 SO4 . L 5 EDO B 1 101 311 EDO EDO . M 5 EDO B 1 102 315 EDO EDO . N 6 SO4 B 1 103 323 SO4 SO4 . O 6 SO4 B 1 104 326 SO4 SO4 . P 5 EDO C 1 101 316 EDO EDO . Q 5 EDO D 1 301 312 EDO EDO . R 6 SO4 D 1 302 324 SO4 SO4 . S 5 EDO E 1 101 314 EDO EDO . T 6 SO4 E 1 102 322 SO4 SO4 . U 7 HOH A 1 401 449 HOH HOH . U 7 HOH A 2 402 626 HOH HOH . U 7 HOH A 3 403 634 HOH HOH . U 7 HOH A 4 404 423 HOH HOH . U 7 HOH A 5 405 447 HOH HOH . U 7 HOH A 6 406 424 HOH HOH . U 7 HOH A 7 407 446 HOH HOH . U 7 HOH A 8 408 547 HOH HOH . U 7 HOH A 9 409 435 HOH HOH . U 7 HOH A 10 410 438 HOH HOH . U 7 HOH A 11 411 488 HOH HOH . U 7 HOH A 12 412 534 HOH HOH . U 7 HOH A 13 413 612 HOH HOH . U 7 HOH A 14 414 577 HOH HOH . U 7 HOH A 15 415 489 HOH HOH . U 7 HOH A 16 416 493 HOH HOH . U 7 HOH A 17 417 445 HOH HOH . U 7 HOH A 18 418 506 HOH HOH . U 7 HOH A 19 419 627 HOH HOH . U 7 HOH A 20 420 556 HOH HOH . U 7 HOH A 21 421 569 HOH HOH . U 7 HOH A 22 422 536 HOH HOH . U 7 HOH A 23 423 605 HOH HOH . U 7 HOH A 24 424 420 HOH HOH . U 7 HOH A 25 425 440 HOH HOH . U 7 HOH A 26 426 583 HOH HOH . U 7 HOH A 27 427 478 HOH HOH . U 7 HOH A 28 428 463 HOH HOH . U 7 HOH A 29 429 484 HOH HOH . U 7 HOH A 30 430 519 HOH HOH . U 7 HOH A 31 431 552 HOH HOH . U 7 HOH A 32 432 609 HOH HOH . U 7 HOH A 33 433 537 HOH HOH . U 7 HOH A 34 434 492 HOH HOH . U 7 HOH A 35 435 541 HOH HOH . U 7 HOH A 36 436 454 HOH HOH . U 7 HOH A 37 437 491 HOH HOH . U 7 HOH A 38 438 419 HOH HOH . U 7 HOH A 39 439 426 HOH HOH . U 7 HOH A 40 440 412 HOH HOH . U 7 HOH A 41 441 421 HOH HOH . U 7 HOH A 42 442 401 HOH HOH . U 7 HOH A 43 443 464 HOH HOH . U 7 HOH A 44 444 523 HOH HOH . U 7 HOH A 45 445 482 HOH HOH . U 7 HOH A 46 446 591 HOH HOH . U 7 HOH A 47 447 409 HOH HOH . U 7 HOH A 48 448 594 HOH HOH . U 7 HOH A 49 449 620 HOH HOH . U 7 HOH A 50 450 522 HOH HOH . U 7 HOH A 51 451 602 HOH HOH . U 7 HOH A 52 452 561 HOH HOH . U 7 HOH A 53 453 545 HOH HOH . U 7 HOH A 54 454 509 HOH HOH . U 7 HOH A 55 455 407 HOH HOH . U 7 HOH A 56 456 528 HOH HOH . U 7 HOH A 57 457 576 HOH HOH . U 7 HOH A 58 458 601 HOH HOH . U 7 HOH A 59 459 531 HOH HOH . U 7 HOH A 60 460 623 HOH HOH . U 7 HOH A 61 461 495 HOH HOH . U 7 HOH A 62 462 450 HOH HOH . U 7 HOH A 63 463 515 HOH HOH . U 7 HOH A 64 464 557 HOH HOH . U 7 HOH A 65 465 555 HOH HOH . U 7 HOH A 66 466 413 HOH HOH . U 7 HOH A 67 467 425 HOH HOH . U 7 HOH A 68 468 403 HOH HOH . U 7 HOH A 69 469 480 HOH HOH . U 7 HOH A 70 470 516 HOH HOH . U 7 HOH A 71 471 504 HOH HOH . U 7 HOH A 72 472 431 HOH HOH . U 7 HOH A 73 473 611 HOH HOH . U 7 HOH A 74 474 468 HOH HOH . U 7 HOH A 75 475 549 HOH HOH . U 7 HOH A 76 476 500 HOH HOH . U 7 HOH A 77 477 474 HOH HOH . U 7 HOH A 78 478 510 HOH HOH . U 7 HOH A 79 479 584 HOH HOH . U 7 HOH A 80 480 458 HOH HOH . U 7 HOH A 81 481 550 HOH HOH . U 7 HOH A 82 482 467 HOH HOH . U 7 HOH A 83 483 590 HOH HOH . U 7 HOH A 84 484 473 HOH HOH . U 7 HOH A 85 485 617 HOH HOH . U 7 HOH A 86 486 606 HOH HOH . U 7 HOH A 87 487 630 HOH HOH . V 7 HOH B 1 201 636 HOH HOH . V 7 HOH B 2 202 580 HOH HOH . V 7 HOH B 3 203 613 HOH HOH . V 7 HOH B 4 204 441 HOH HOH . V 7 HOH B 5 205 471 HOH HOH . V 7 HOH B 6 206 622 HOH HOH . V 7 HOH B 7 207 437 HOH HOH . V 7 HOH B 8 208 466 HOH HOH . V 7 HOH B 9 209 629 HOH HOH . V 7 HOH B 10 210 582 HOH HOH . V 7 HOH B 11 211 548 HOH HOH . V 7 HOH B 12 212 486 HOH HOH . V 7 HOH B 13 213 621 HOH HOH . V 7 HOH B 14 214 490 HOH HOH . V 7 HOH B 15 215 587 HOH HOH . V 7 HOH B 16 216 595 HOH HOH . V 7 HOH B 17 217 402 HOH HOH . V 7 HOH B 18 218 579 HOH HOH . V 7 HOH B 19 219 578 HOH HOH . V 7 HOH B 20 220 589 HOH HOH . V 7 HOH B 21 221 479 HOH HOH . V 7 HOH B 22 222 610 HOH HOH . V 7 HOH B 23 223 518 HOH HOH . W 7 HOH C 1 201 459 HOH HOH . X 7 HOH D 1 401 560 HOH HOH . X 7 HOH D 2 402 570 HOH HOH . X 7 HOH D 3 403 542 HOH HOH . X 7 HOH D 4 404 451 HOH HOH . X 7 HOH D 5 405 514 HOH HOH . X 7 HOH D 6 406 503 HOH HOH . X 7 HOH D 7 407 439 HOH HOH . X 7 HOH D 8 408 525 HOH HOH . X 7 HOH D 9 409 453 HOH HOH . X 7 HOH D 10 410 461 HOH HOH . X 7 HOH D 11 411 540 HOH HOH . X 7 HOH D 12 412 604 HOH HOH . X 7 HOH D 13 413 455 HOH HOH . X 7 HOH D 14 414 417 HOH HOH . X 7 HOH D 15 415 632 HOH HOH . X 7 HOH D 16 416 427 HOH HOH . X 7 HOH D 17 417 543 HOH HOH . X 7 HOH D 18 418 442 HOH HOH . X 7 HOH D 19 419 496 HOH HOH . X 7 HOH D 20 420 406 HOH HOH . X 7 HOH D 21 421 476 HOH HOH . X 7 HOH D 22 422 574 HOH HOH . X 7 HOH D 23 423 575 HOH HOH . X 7 HOH D 24 424 415 HOH HOH . X 7 HOH D 25 425 532 HOH HOH . X 7 HOH D 26 426 571 HOH HOH . X 7 HOH D 27 427 422 HOH HOH . X 7 HOH D 28 428 443 HOH HOH . X 7 HOH D 29 429 501 HOH HOH . X 7 HOH D 30 430 462 HOH HOH . X 7 HOH D 31 431 599 HOH HOH . X 7 HOH D 32 432 581 HOH HOH . X 7 HOH D 33 433 598 HOH HOH . X 7 HOH D 34 434 494 HOH HOH . X 7 HOH D 35 435 603 HOH HOH . X 7 HOH D 36 436 418 HOH HOH . X 7 HOH D 37 437 502 HOH HOH . X 7 HOH D 38 438 524 HOH HOH . X 7 HOH D 39 439 410 HOH HOH . X 7 HOH D 40 440 517 HOH HOH . X 7 HOH D 41 441 633 HOH HOH . X 7 HOH D 42 442 520 HOH HOH . X 7 HOH D 43 443 444 HOH HOH . X 7 HOH D 44 444 635 HOH HOH . X 7 HOH D 45 445 481 HOH HOH . X 7 HOH D 46 446 452 HOH HOH . X 7 HOH D 47 447 551 HOH HOH . X 7 HOH D 48 448 538 HOH HOH . X 7 HOH D 49 449 408 HOH HOH . X 7 HOH D 50 450 483 HOH HOH . X 7 HOH D 51 451 527 HOH HOH . X 7 HOH D 52 452 456 HOH HOH . X 7 HOH D 53 453 529 HOH HOH . X 7 HOH D 54 454 558 HOH HOH . X 7 HOH D 55 455 596 HOH HOH . X 7 HOH D 56 456 414 HOH HOH . X 7 HOH D 57 457 470 HOH HOH . X 7 HOH D 58 458 477 HOH HOH . X 7 HOH D 59 459 512 HOH HOH . X 7 HOH D 60 460 625 HOH HOH . X 7 HOH D 61 461 472 HOH HOH . X 7 HOH D 62 462 608 HOH HOH . X 7 HOH D 63 463 411 HOH HOH . X 7 HOH D 64 464 535 HOH HOH . X 7 HOH D 65 465 485 HOH HOH . X 7 HOH D 66 466 588 HOH HOH . X 7 HOH D 67 467 507 HOH HOH . X 7 HOH D 68 468 559 HOH HOH . X 7 HOH D 69 469 521 HOH HOH . X 7 HOH D 70 470 553 HOH HOH . X 7 HOH D 71 471 487 HOH HOH . X 7 HOH D 72 472 430 HOH HOH . X 7 HOH D 73 473 530 HOH HOH . X 7 HOH D 74 474 498 HOH HOH . X 7 HOH D 75 475 497 HOH HOH . X 7 HOH D 76 476 554 HOH HOH . X 7 HOH D 77 477 432 HOH HOH . X 7 HOH D 78 478 593 HOH HOH . X 7 HOH D 79 479 508 HOH HOH . X 7 HOH D 80 480 614 HOH HOH . X 7 HOH D 81 481 416 HOH HOH . X 7 HOH D 82 482 607 HOH HOH . X 7 HOH D 83 483 460 HOH HOH . X 7 HOH D 84 484 457 HOH HOH . X 7 HOH D 85 485 592 HOH HOH . X 7 HOH D 86 486 567 HOH HOH . X 7 HOH D 87 487 618 HOH HOH . X 7 HOH D 88 488 475 HOH HOH . X 7 HOH D 89 489 565 HOH HOH . X 7 HOH D 90 490 564 HOH HOH . X 7 HOH D 91 491 568 HOH HOH . Y 7 HOH E 1 201 428 HOH HOH . Y 7 HOH E 2 202 533 HOH HOH . Y 7 HOH E 3 203 616 HOH HOH . Y 7 HOH E 4 204 539 HOH HOH . Y 7 HOH E 5 205 433 HOH HOH . Y 7 HOH E 6 206 597 HOH HOH . Y 7 HOH E 7 207 585 HOH HOH . Y 7 HOH E 8 208 511 HOH HOH . Y 7 HOH E 9 209 562 HOH HOH . Y 7 HOH E 10 210 429 HOH HOH . Y 7 HOH E 11 211 405 HOH HOH . Y 7 HOH E 12 212 572 HOH HOH . Y 7 HOH E 13 213 628 HOH HOH . Y 7 HOH E 14 214 573 HOH HOH . Y 7 HOH E 15 215 499 HOH HOH . Y 7 HOH E 16 216 563 HOH HOH . Y 7 HOH E 17 217 434 HOH HOH . Y 7 HOH E 18 218 404 HOH HOH . Y 7 HOH E 19 219 586 HOH HOH . Y 7 HOH E 20 220 600 HOH HOH . Y 7 HOH E 21 221 513 HOH HOH . Y 7 HOH E 22 222 619 HOH HOH . Y 7 HOH E 23 223 615 HOH HOH . Y 7 HOH E 24 224 526 HOH HOH . Y 7 HOH E 25 225 566 HOH HOH . Y 7 HOH E 26 226 546 HOH HOH . Y 7 HOH E 27 227 631 HOH HOH . Y 7 HOH E 28 228 637 HOH HOH . Y 7 HOH E 29 229 469 HOH HOH . Y 7 HOH E 30 230 624 HOH HOH . Y 7 HOH E 31 231 436 HOH HOH . Z 7 HOH F 1 101 505 HOH HOH . Z 7 HOH F 2 102 544 HOH HOH . Z 7 HOH F 3 103 448 HOH HOH . Z 7 HOH F 4 104 465 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 5 49.096 61.137 -13.406 1 56.22 ? C1 EDO 302 A 1 HETATM 2 O O1 EDO . . . H 5 48.155 60.634 -12.449 1 49.88 ? O1 EDO 302 A 1 HETATM 3 C C2 EDO . . . H 5 49.921 59.99 -13.954 1 57.31 ? C2 EDO 302 A 1 HETATM 4 O O2 EDO . . . H 5 50.541 59.338 -12.851 1 59.72 ? O2 EDO 302 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 4 #