data_5EU5 # _model_server_result.job_id lk6CSYNORSGWQ8brWFUMJQ _model_server_result.datetime_utc '2024-12-01 00:50:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eu5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EA","auth_seq_id":103}' # _entry.id 5EU5 # _exptl.entry_id 5EU5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 18 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.22 _cell.angle_gamma 90 _cell.entry_id 5EU5 _cell.length_a 56.33 _cell.length_b 79.64 _cell.length_c 57.74 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EU5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 CA N N ? 4 DA N N ? 4 EA N N ? 4 FA N N ? 4 GA N N ? 4 HA N N ? 4 LA N N ? 4 MA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5EU5 _atom_sites.fract_transf_matrix[1][1] 0.017753 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008743 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012557 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019305 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO A 1 301 301 EDO EDO . E 4 EDO A 1 302 305 EDO EDO . F 4 EDO A 1 303 306 EDO EDO . G 4 EDO A 1 304 310 EDO EDO . H 4 EDO A 1 305 311 EDO EDO . I 4 EDO A 1 306 312 EDO EDO . J 4 EDO A 1 307 313 EDO EDO . K 4 EDO A 1 308 315 EDO EDO . L 4 EDO A 1 309 316 EDO EDO . M 4 EDO A 1 310 318 EDO EDO . N 5 GOL A 1 311 321 GOL GOL . O 5 GOL A 1 312 322 GOL GOL . P 5 GOL A 1 313 323 GOL GOL . Q 5 GOL A 1 314 324 GOL GOL . R 5 GOL A 1 315 325 GOL GOL . S 5 GOL A 1 316 326 GOL GOL . T 5 GOL A 1 317 327 GOL GOL . U 5 GOL A 1 318 328 GOL GOL . V 5 GOL A 1 319 329 GOL GOL . W 5 GOL A 1 320 330 GOL GOL . X 6 SO4 A 1 321 341 SO4 SO4 . Y 6 SO4 A 1 322 343 SO4 SO4 . Z 6 SO4 A 1 323 345 SO4 SO4 . AA 6 SO4 A 1 324 346 SO4 SO4 . BA 6 SO4 A 1 325 348 SO4 SO4 . CA 4 EDO B 1 101 303 EDO EDO . DA 4 EDO B 1 102 304 EDO EDO . EA 4 EDO B 1 103 307 EDO EDO . FA 4 EDO B 1 104 308 EDO EDO . GA 4 EDO B 1 105 309 EDO EDO . HA 4 EDO B 1 106 317 EDO EDO . IA 6 SO4 B 1 107 342 SO4 SO4 . JA 6 SO4 B 1 108 344 SO4 SO4 . KA 6 SO4 B 1 109 347 SO4 SO4 . LA 4 EDO C 1 101 302 EDO EDO . MA 4 EDO C 1 102 314 EDO EDO . NA 7 HOH A 1 401 606 HOH HOH . NA 7 HOH A 2 402 404 HOH HOH . NA 7 HOH A 3 403 603 HOH HOH . NA 7 HOH A 4 404 427 HOH HOH . NA 7 HOH A 5 405 513 HOH HOH . NA 7 HOH A 6 406 534 HOH HOH . NA 7 HOH A 7 407 480 HOH HOH . NA 7 HOH A 8 408 544 HOH HOH . NA 7 HOH A 9 409 450 HOH HOH . NA 7 HOH A 10 410 552 HOH HOH . NA 7 HOH A 11 411 503 HOH HOH . NA 7 HOH A 12 412 491 HOH HOH . NA 7 HOH A 13 413 482 HOH HOH . NA 7 HOH A 14 414 542 HOH HOH . NA 7 HOH A 15 415 521 HOH HOH . NA 7 HOH A 16 416 487 HOH HOH . NA 7 HOH A 17 417 569 HOH HOH . NA 7 HOH A 18 418 412 HOH HOH . NA 7 HOH A 19 419 511 HOH HOH . NA 7 HOH A 20 420 489 HOH HOH . NA 7 HOH A 21 421 492 HOH HOH . NA 7 HOH A 22 422 417 HOH HOH . NA 7 HOH A 23 423 426 HOH HOH . NA 7 HOH A 24 424 488 HOH HOH . NA 7 HOH A 25 425 554 HOH HOH . NA 7 HOH A 26 426 476 HOH HOH . NA 7 HOH A 27 427 538 HOH HOH . NA 7 HOH A 28 428 564 HOH HOH . NA 7 HOH A 29 429 497 HOH HOH . NA 7 HOH A 30 430 423 HOH HOH . NA 7 HOH A 31 431 460 HOH HOH . NA 7 HOH A 32 432 429 HOH HOH . NA 7 HOH A 33 433 452 HOH HOH . NA 7 HOH A 34 434 509 HOH HOH . NA 7 HOH A 35 435 481 HOH HOH . NA 7 HOH A 36 436 447 HOH HOH . NA 7 HOH A 37 437 478 HOH HOH . NA 7 HOH A 38 438 408 HOH HOH . NA 7 HOH A 39 439 403 HOH HOH . NA 7 HOH A 40 440 471 HOH HOH . NA 7 HOH A 41 441 589 HOH HOH . NA 7 HOH A 42 442 562 HOH HOH . NA 7 HOH A 43 443 469 HOH HOH . NA 7 HOH A 44 444 493 HOH HOH . NA 7 HOH A 45 445 430 HOH HOH . NA 7 HOH A 46 446 431 HOH HOH . NA 7 HOH A 47 447 409 HOH HOH . NA 7 HOH A 48 448 402 HOH HOH . NA 7 HOH A 49 449 406 HOH HOH . NA 7 HOH A 50 450 578 HOH HOH . NA 7 HOH A 51 451 413 HOH HOH . NA 7 HOH A 52 452 532 HOH HOH . NA 7 HOH A 53 453 474 HOH HOH . NA 7 HOH A 54 454 498 HOH HOH . NA 7 HOH A 55 455 479 HOH HOH . NA 7 HOH A 56 456 414 HOH HOH . NA 7 HOH A 57 457 550 HOH HOH . NA 7 HOH A 58 458 541 HOH HOH . NA 7 HOH A 59 459 461 HOH HOH . NA 7 HOH A 60 460 442 HOH HOH . NA 7 HOH A 61 461 518 HOH HOH . NA 7 HOH A 62 462 443 HOH HOH . NA 7 HOH A 63 463 539 HOH HOH . NA 7 HOH A 64 464 435 HOH HOH . NA 7 HOH A 65 465 463 HOH HOH . NA 7 HOH A 66 466 561 HOH HOH . NA 7 HOH A 67 467 472 HOH HOH . NA 7 HOH A 68 468 437 HOH HOH . NA 7 HOH A 69 469 560 HOH HOH . NA 7 HOH A 70 470 526 HOH HOH . NA 7 HOH A 71 471 420 HOH HOH . NA 7 HOH A 72 472 556 HOH HOH . NA 7 HOH A 73 473 440 HOH HOH . NA 7 HOH A 74 474 434 HOH HOH . NA 7 HOH A 75 475 602 HOH HOH . NA 7 HOH A 76 476 494 HOH HOH . NA 7 HOH A 77 477 549 HOH HOH . NA 7 HOH A 78 478 563 HOH HOH . NA 7 HOH A 79 479 451 HOH HOH . NA 7 HOH A 80 480 591 HOH HOH . NA 7 HOH A 81 481 416 HOH HOH . NA 7 HOH A 82 482 459 HOH HOH . NA 7 HOH A 83 483 535 HOH HOH . NA 7 HOH A 84 484 545 HOH HOH . NA 7 HOH A 85 485 600 HOH HOH . NA 7 HOH A 86 486 595 HOH HOH . NA 7 HOH A 87 487 401 HOH HOH . NA 7 HOH A 88 488 496 HOH HOH . NA 7 HOH A 89 489 473 HOH HOH . NA 7 HOH A 90 490 418 HOH HOH . NA 7 HOH A 91 491 575 HOH HOH . NA 7 HOH A 92 492 411 HOH HOH . NA 7 HOH A 93 493 547 HOH HOH . NA 7 HOH A 94 494 477 HOH HOH . NA 7 HOH A 95 495 462 HOH HOH . NA 7 HOH A 96 496 594 HOH HOH . NA 7 HOH A 97 497 523 HOH HOH . NA 7 HOH A 98 498 579 HOH HOH . NA 7 HOH A 99 499 543 HOH HOH . NA 7 HOH A 100 500 421 HOH HOH . NA 7 HOH A 101 501 444 HOH HOH . NA 7 HOH A 102 502 582 HOH HOH . NA 7 HOH A 103 503 565 HOH HOH . NA 7 HOH A 104 504 533 HOH HOH . NA 7 HOH A 105 505 495 HOH HOH . NA 7 HOH A 106 506 432 HOH HOH . NA 7 HOH A 107 507 425 HOH HOH . NA 7 HOH A 108 508 555 HOH HOH . NA 7 HOH A 109 509 467 HOH HOH . NA 7 HOH A 110 510 537 HOH HOH . NA 7 HOH A 111 511 567 HOH HOH . NA 7 HOH A 112 512 436 HOH HOH . NA 7 HOH A 113 513 528 HOH HOH . NA 7 HOH A 114 514 464 HOH HOH . NA 7 HOH A 115 515 407 HOH HOH . NA 7 HOH A 116 516 585 HOH HOH . NA 7 HOH A 117 517 448 HOH HOH . NA 7 HOH A 118 518 419 HOH HOH . NA 7 HOH A 119 519 604 HOH HOH . NA 7 HOH A 120 520 553 HOH HOH . NA 7 HOH A 121 521 458 HOH HOH . NA 7 HOH A 122 522 527 HOH HOH . NA 7 HOH A 123 523 438 HOH HOH . NA 7 HOH A 124 524 405 HOH HOH . NA 7 HOH A 125 525 456 HOH HOH . NA 7 HOH A 126 526 470 HOH HOH . NA 7 HOH A 127 527 446 HOH HOH . NA 7 HOH A 128 528 583 HOH HOH . NA 7 HOH A 129 529 517 HOH HOH . NA 7 HOH A 130 530 468 HOH HOH . NA 7 HOH A 131 531 410 HOH HOH . NA 7 HOH A 132 532 599 HOH HOH . NA 7 HOH A 133 533 500 HOH HOH . NA 7 HOH A 134 534 548 HOH HOH . NA 7 HOH A 135 535 551 HOH HOH . NA 7 HOH A 136 536 546 HOH HOH . NA 7 HOH A 137 537 540 HOH HOH . NA 7 HOH A 138 538 522 HOH HOH . NA 7 HOH A 139 539 524 HOH HOH . NA 7 HOH A 140 540 566 HOH HOH . NA 7 HOH A 141 541 574 HOH HOH . NA 7 HOH A 142 542 593 HOH HOH . NA 7 HOH A 143 543 590 HOH HOH . NA 7 HOH A 144 544 584 HOH HOH . NA 7 HOH A 145 545 466 HOH HOH . NA 7 HOH A 146 546 536 HOH HOH . NA 7 HOH A 147 547 576 HOH HOH . NA 7 HOH A 148 548 601 HOH HOH . NA 7 HOH A 149 549 571 HOH HOH . NA 7 HOH A 150 550 573 HOH HOH . NA 7 HOH A 151 551 520 HOH HOH . NA 7 HOH A 152 552 572 HOH HOH . NA 7 HOH A 153 553 568 HOH HOH . NA 7 HOH A 154 554 592 HOH HOH . NA 7 HOH A 155 555 587 HOH HOH . OA 7 HOH B 1 201 557 HOH HOH . OA 7 HOH B 2 202 581 HOH HOH . OA 7 HOH B 3 203 608 HOH HOH . OA 7 HOH B 4 204 506 HOH HOH . OA 7 HOH B 5 205 508 HOH HOH . OA 7 HOH B 6 206 529 HOH HOH . OA 7 HOH B 7 207 486 HOH HOH . OA 7 HOH B 8 208 577 HOH HOH . OA 7 HOH B 9 209 484 HOH HOH . OA 7 HOH B 10 210 580 HOH HOH . OA 7 HOH B 11 211 422 HOH HOH . OA 7 HOH B 12 212 465 HOH HOH . OA 7 HOH B 13 213 586 HOH HOH . OA 7 HOH B 14 214 433 HOH HOH . OA 7 HOH B 15 215 454 HOH HOH . OA 7 HOH B 16 216 490 HOH HOH . OA 7 HOH B 17 217 530 HOH HOH . OA 7 HOH B 18 218 510 HOH HOH . OA 7 HOH B 19 219 507 HOH HOH . OA 7 HOH B 20 220 439 HOH HOH . OA 7 HOH B 21 221 558 HOH HOH . OA 7 HOH B 22 222 475 HOH HOH . OA 7 HOH B 23 223 483 HOH HOH . OA 7 HOH B 24 224 501 HOH HOH . OA 7 HOH B 25 225 502 HOH HOH . OA 7 HOH B 26 226 441 HOH HOH . OA 7 HOH B 27 227 453 HOH HOH . OA 7 HOH B 28 228 455 HOH HOH . OA 7 HOH B 29 229 531 HOH HOH . OA 7 HOH B 30 230 449 HOH HOH . OA 7 HOH B 31 231 428 HOH HOH . OA 7 HOH B 32 232 525 HOH HOH . OA 7 HOH B 33 233 516 HOH HOH . OA 7 HOH B 34 234 445 HOH HOH . OA 7 HOH B 35 235 598 HOH HOH . OA 7 HOH B 36 236 504 HOH HOH . OA 7 HOH B 37 237 499 HOH HOH . OA 7 HOH B 38 238 559 HOH HOH . OA 7 HOH B 39 239 597 HOH HOH . OA 7 HOH B 40 240 605 HOH HOH . OA 7 HOH B 41 241 415 HOH HOH . OA 7 HOH B 42 242 424 HOH HOH . OA 7 HOH B 43 243 596 HOH HOH . OA 7 HOH B 44 244 588 HOH HOH . OA 7 HOH B 45 245 457 HOH HOH . OA 7 HOH B 46 246 515 HOH HOH . OA 7 HOH B 47 247 519 HOH HOH . OA 7 HOH B 48 248 570 HOH HOH . PA 7 HOH C 1 201 607 HOH HOH . PA 7 HOH C 2 202 514 HOH HOH . PA 7 HOH C 3 203 505 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . EA 4 77.357 11.042 25.075 1 18.23 ? C1 EDO 103 B 1 HETATM 2 O O1 EDO . . . EA 4 76.895 11.549 23.825 1 19.8 ? O1 EDO 103 B 1 HETATM 3 C C2 EDO . . . EA 4 78.858 11.227 25.063 1 19.9 ? C2 EDO 103 B 1 HETATM 4 O O2 EDO . . . EA 4 79.385 10.373 24.039 1 18.78 ? O2 EDO 103 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #