data_5EU6 # _model_server_result.job_id vJ5GHCRxQB--kHsYy2L7Pg _model_server_result.datetime_utc '2024-11-01 15:31:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eu6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":301}' # _entry.id 5EU6 # _exptl.entry_id 5EU6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 85.01 _cell.angle_beta 81.64 _cell.angle_gamma 72.63 _cell.entry_id 5EU6 _cell.length_a 45.52 _cell.length_b 54.41 _cell.length_c 112.12 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EU6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N ? 6 Q N N ? 6 U N N ? 6 V N N ? 6 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf4 D SG CYS 24 D CYS 24 1_555 D SG CYS 91 D CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? disulf ? disulf5 D SG CYS 138 D CYS 138 1_555 D SG CYS 188 D CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf6 D SG CYS 163 D CYS 163 1_555 E SG CYS 171 E CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf7 E SG CYS 23 E CYS 24 1_555 E SG CYS 92 E CYS 93 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.968 ? disulf ? disulf8 E SG CYS 23 E CYS 24 1_555 E SG CYS 92 E CYS 93 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.094 ? disulf ? disulf9 E SG CYS 145 E CYS 146 1_555 E SG CYS 210 E CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5EU6 _atom_sites.fract_transf_matrix[1][1] 0.021968 _atom_sites.fract_transf_matrix[1][2] -0.006872 _atom_sites.fract_transf_matrix[1][3] -0.002914 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019257 _atom_sites.fract_transf_matrix[2][3] -0.00089 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009024 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 EDO A 1 301 303 EDO EDO . G 6 EDO A 1 302 304 EDO EDO . H 6 EDO A 1 303 305 EDO EDO . I 6 EDO A 1 304 306 EDO EDO . J 6 EDO A 1 305 308 EDO EDO . K 6 EDO A 1 306 309 EDO EDO . L 7 GOL A 1 307 318 GOL GOL . M 8 SO4 A 1 308 323 SO4 SO4 . N 8 SO4 A 1 309 324 SO4 SO4 . O 8 SO4 A 1 310 326 SO4 SO4 . P 8 SO4 A 1 311 327 SO4 SO4 . Q 6 EDO B 1 301 301 EDO EDO . R 8 SO4 B 1 302 322 SO4 SO4 . S 8 SO4 B 1 303 325 SO4 SO4 . T 8 SO4 B 1 304 328 SO4 SO4 . U 6 EDO D 1 301 307 EDO EDO . V 6 EDO D 1 302 310 EDO EDO . W 7 GOL D 1 303 316 GOL GOL . X 6 EDO E 1 301 302 EDO EDO . Y 7 GOL E 1 302 317 GOL GOL . Z 8 SO4 E 1 303 321 SO4 SO4 . AA 9 HOH A 1 401 502 HOH HOH . AA 9 HOH A 2 402 623 HOH HOH . AA 9 HOH A 3 403 615 HOH HOH . AA 9 HOH A 4 404 630 HOH HOH . AA 9 HOH A 5 405 481 HOH HOH . AA 9 HOH A 6 406 589 HOH HOH . AA 9 HOH A 7 407 528 HOH HOH . AA 9 HOH A 8 408 620 HOH HOH . AA 9 HOH A 9 409 429 HOH HOH . AA 9 HOH A 10 410 490 HOH HOH . AA 9 HOH A 11 411 483 HOH HOH . AA 9 HOH A 12 412 545 HOH HOH . AA 9 HOH A 13 413 433 HOH HOH . AA 9 HOH A 14 414 586 HOH HOH . AA 9 HOH A 15 415 474 HOH HOH . AA 9 HOH A 16 416 621 HOH HOH . AA 9 HOH A 17 417 459 HOH HOH . AA 9 HOH A 18 418 570 HOH HOH . AA 9 HOH A 19 419 593 HOH HOH . AA 9 HOH A 20 420 473 HOH HOH . AA 9 HOH A 21 421 551 HOH HOH . AA 9 HOH A 22 422 420 HOH HOH . AA 9 HOH A 23 423 571 HOH HOH . AA 9 HOH A 24 424 498 HOH HOH . AA 9 HOH A 25 425 436 HOH HOH . AA 9 HOH A 26 426 463 HOH HOH . AA 9 HOH A 27 427 512 HOH HOH . AA 9 HOH A 28 428 472 HOH HOH . AA 9 HOH A 29 429 491 HOH HOH . AA 9 HOH A 30 430 435 HOH HOH . AA 9 HOH A 31 431 496 HOH HOH . AA 9 HOH A 32 432 514 HOH HOH . AA 9 HOH A 33 433 535 HOH HOH . AA 9 HOH A 34 434 562 HOH HOH . AA 9 HOH A 35 435 516 HOH HOH . AA 9 HOH A 36 436 412 HOH HOH . AA 9 HOH A 37 437 503 HOH HOH . AA 9 HOH A 38 438 407 HOH HOH . AA 9 HOH A 39 439 414 HOH HOH . AA 9 HOH A 40 440 415 HOH HOH . AA 9 HOH A 41 441 422 HOH HOH . AA 9 HOH A 42 442 529 HOH HOH . AA 9 HOH A 43 443 460 HOH HOH . AA 9 HOH A 44 444 479 HOH HOH . AA 9 HOH A 45 445 438 HOH HOH . AA 9 HOH A 46 446 548 HOH HOH . AA 9 HOH A 47 447 612 HOH HOH . AA 9 HOH A 48 448 504 HOH HOH . AA 9 HOH A 49 449 499 HOH HOH . AA 9 HOH A 50 450 494 HOH HOH . AA 9 HOH A 51 451 561 HOH HOH . AA 9 HOH A 52 452 437 HOH HOH . AA 9 HOH A 53 453 458 HOH HOH . AA 9 HOH A 54 454 599 HOH HOH . AA 9 HOH A 55 455 495 HOH HOH . AA 9 HOH A 56 456 624 HOH HOH . AA 9 HOH A 57 457 539 HOH HOH . AA 9 HOH A 58 458 403 HOH HOH . AA 9 HOH A 59 459 631 HOH HOH . AA 9 HOH A 60 460 452 HOH HOH . AA 9 HOH A 61 461 566 HOH HOH . AA 9 HOH A 62 462 598 HOH HOH . AA 9 HOH A 63 463 606 HOH HOH . AA 9 HOH A 64 464 558 HOH HOH . AA 9 HOH A 65 465 506 HOH HOH . AA 9 HOH A 66 466 464 HOH HOH . AA 9 HOH A 67 467 592 HOH HOH . AA 9 HOH A 68 468 492 HOH HOH . AA 9 HOH A 69 469 597 HOH HOH . AA 9 HOH A 70 470 549 HOH HOH . AA 9 HOH A 71 471 470 HOH HOH . AA 9 HOH A 72 472 454 HOH HOH . AA 9 HOH A 73 473 517 HOH HOH . AA 9 HOH A 74 474 530 HOH HOH . AA 9 HOH A 75 475 500 HOH HOH . AA 9 HOH A 76 476 601 HOH HOH . AA 9 HOH A 77 477 632 HOH HOH . AA 9 HOH A 78 478 583 HOH HOH . AA 9 HOH A 79 479 627 HOH HOH . AA 9 HOH A 80 480 546 HOH HOH . AA 9 HOH A 81 481 541 HOH HOH . AA 9 HOH A 82 482 619 HOH HOH . AA 9 HOH A 83 483 456 HOH HOH . AA 9 HOH A 84 484 439 HOH HOH . AA 9 HOH A 85 485 608 HOH HOH . AA 9 HOH A 86 486 607 HOH HOH . AA 9 HOH A 87 487 579 HOH HOH . AA 9 HOH A 88 488 542 HOH HOH . AA 9 HOH A 89 489 515 HOH HOH . AA 9 HOH A 90 490 465 HOH HOH . AA 9 HOH A 91 491 526 HOH HOH . AA 9 HOH A 92 492 469 HOH HOH . AA 9 HOH A 93 493 587 HOH HOH . AA 9 HOH A 94 494 538 HOH HOH . AA 9 HOH A 95 495 462 HOH HOH . AA 9 HOH A 96 496 603 HOH HOH . AA 9 HOH A 97 497 482 HOH HOH . AA 9 HOH A 98 498 580 HOH HOH . BA 9 HOH B 1 401 416 HOH HOH . BA 9 HOH B 2 402 616 HOH HOH . BA 9 HOH B 3 403 628 HOH HOH . BA 9 HOH B 4 404 477 HOH HOH . BA 9 HOH B 5 405 547 HOH HOH . BA 9 HOH B 6 406 525 HOH HOH . BA 9 HOH B 7 407 552 HOH HOH . BA 9 HOH B 8 408 540 HOH HOH . BA 9 HOH B 9 409 431 HOH HOH . BA 9 HOH B 10 410 590 HOH HOH . BA 9 HOH B 11 411 594 HOH HOH . BA 9 HOH B 12 412 629 HOH HOH . BA 9 HOH B 13 413 560 HOH HOH . BA 9 HOH B 14 414 519 HOH HOH . BA 9 HOH B 15 415 626 HOH HOH . BA 9 HOH B 16 416 478 HOH HOH . BA 9 HOH B 17 417 595 HOH HOH . BA 9 HOH B 18 418 554 HOH HOH . BA 9 HOH B 19 419 425 HOH HOH . BA 9 HOH B 20 420 489 HOH HOH . BA 9 HOH B 21 421 524 HOH HOH . BA 9 HOH B 22 422 466 HOH HOH . BA 9 HOH B 23 423 582 HOH HOH . BA 9 HOH B 24 424 605 HOH HOH . BA 9 HOH B 25 425 402 HOH HOH . BA 9 HOH B 26 426 544 HOH HOH . BA 9 HOH B 27 427 523 HOH HOH . CA 9 HOH C 1 101 505 HOH HOH . CA 9 HOH C 2 102 509 HOH HOH . CA 9 HOH C 3 103 446 HOH HOH . CA 9 HOH C 4 104 611 HOH HOH . DA 9 HOH D 1 401 440 HOH HOH . DA 9 HOH D 2 402 622 HOH HOH . DA 9 HOH D 3 403 453 HOH HOH . DA 9 HOH D 4 404 493 HOH HOH . DA 9 HOH D 5 405 448 HOH HOH . DA 9 HOH D 6 406 588 HOH HOH . DA 9 HOH D 7 407 564 HOH HOH . DA 9 HOH D 8 408 610 HOH HOH . DA 9 HOH D 9 409 635 HOH HOH . DA 9 HOH D 10 410 419 HOH HOH . DA 9 HOH D 11 411 569 HOH HOH . DA 9 HOH D 12 412 455 HOH HOH . DA 9 HOH D 13 413 450 HOH HOH . DA 9 HOH D 14 414 518 HOH HOH . DA 9 HOH D 15 415 604 HOH HOH . DA 9 HOH D 16 416 574 HOH HOH . DA 9 HOH D 17 417 508 HOH HOH . DA 9 HOH D 18 418 532 HOH HOH . DA 9 HOH D 19 419 409 HOH HOH . DA 9 HOH D 20 420 485 HOH HOH . DA 9 HOH D 21 421 521 HOH HOH . DA 9 HOH D 22 422 617 HOH HOH . DA 9 HOH D 23 423 404 HOH HOH . DA 9 HOH D 24 424 581 HOH HOH . DA 9 HOH D 25 425 536 HOH HOH . DA 9 HOH D 26 426 618 HOH HOH . DA 9 HOH D 27 427 484 HOH HOH . DA 9 HOH D 28 428 401 HOH HOH . DA 9 HOH D 29 429 423 HOH HOH . DA 9 HOH D 30 430 413 HOH HOH . DA 9 HOH D 31 431 432 HOH HOH . DA 9 HOH D 32 432 430 HOH HOH . DA 9 HOH D 33 433 427 HOH HOH . DA 9 HOH D 34 434 531 HOH HOH . DA 9 HOH D 35 435 584 HOH HOH . DA 9 HOH D 36 436 411 HOH HOH . DA 9 HOH D 37 437 543 HOH HOH . DA 9 HOH D 38 438 550 HOH HOH . DA 9 HOH D 39 439 513 HOH HOH . DA 9 HOH D 40 440 428 HOH HOH . DA 9 HOH D 41 441 434 HOH HOH . DA 9 HOH D 42 442 555 HOH HOH . DA 9 HOH D 43 443 488 HOH HOH . DA 9 HOH D 44 444 486 HOH HOH . DA 9 HOH D 45 445 442 HOH HOH . DA 9 HOH D 46 446 585 HOH HOH . DA 9 HOH D 47 447 625 HOH HOH . DA 9 HOH D 48 448 565 HOH HOH . DA 9 HOH D 49 449 577 HOH HOH . DA 9 HOH D 50 450 578 HOH HOH . DA 9 HOH D 51 451 480 HOH HOH . DA 9 HOH D 52 452 467 HOH HOH . EA 9 HOH E 1 401 522 HOH HOH . EA 9 HOH E 2 402 418 HOH HOH . EA 9 HOH E 3 403 568 HOH HOH . EA 9 HOH E 4 404 497 HOH HOH . EA 9 HOH E 5 405 406 HOH HOH . EA 9 HOH E 6 406 424 HOH HOH . EA 9 HOH E 7 407 408 HOH HOH . EA 9 HOH E 8 408 426 HOH HOH . EA 9 HOH E 9 409 567 HOH HOH . EA 9 HOH E 10 410 405 HOH HOH . EA 9 HOH E 11 411 449 HOH HOH . EA 9 HOH E 12 412 576 HOH HOH . EA 9 HOH E 13 413 553 HOH HOH . EA 9 HOH E 14 414 511 HOH HOH . EA 9 HOH E 15 415 476 HOH HOH . EA 9 HOH E 16 416 602 HOH HOH . EA 9 HOH E 17 417 447 HOH HOH . EA 9 HOH E 18 418 559 HOH HOH . EA 9 HOH E 19 419 443 HOH HOH . EA 9 HOH E 20 420 410 HOH HOH . EA 9 HOH E 21 421 563 HOH HOH . EA 9 HOH E 22 422 421 HOH HOH . EA 9 HOH E 23 423 609 HOH HOH . EA 9 HOH E 24 424 634 HOH HOH . EA 9 HOH E 25 425 441 HOH HOH . EA 9 HOH E 26 426 575 HOH HOH . EA 9 HOH E 27 427 444 HOH HOH . EA 9 HOH E 28 428 591 HOH HOH . EA 9 HOH E 29 429 534 HOH HOH . EA 9 HOH E 30 430 417 HOH HOH . EA 9 HOH E 31 431 533 HOH HOH . EA 9 HOH E 32 432 613 HOH HOH . EA 9 HOH E 33 433 573 HOH HOH . EA 9 HOH E 34 434 614 HOH HOH . EA 9 HOH E 35 435 457 HOH HOH . EA 9 HOH E 36 436 461 HOH HOH . EA 9 HOH E 37 437 507 HOH HOH . EA 9 HOH E 38 438 572 HOH HOH . EA 9 HOH E 39 439 596 HOH HOH . EA 9 HOH E 40 440 471 HOH HOH . EA 9 HOH E 41 441 557 HOH HOH . EA 9 HOH E 42 442 537 HOH HOH . EA 9 HOH E 43 443 556 HOH HOH . EA 9 HOH E 44 444 475 HOH HOH . EA 9 HOH E 45 445 451 HOH HOH . EA 9 HOH E 46 446 520 HOH HOH . EA 9 HOH E 47 447 600 HOH HOH . EA 9 HOH E 48 448 527 HOH HOH . EA 9 HOH E 49 449 487 HOH HOH . EA 9 HOH E 50 450 468 HOH HOH . EA 9 HOH E 51 451 445 HOH HOH . EA 9 HOH E 52 452 510 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . X 6 15.519 53.381 -18.301 1 48.11 ? C1 EDO 301 E 1 HETATM 2 O O1 EDO . . . X 6 14.143 53.777 -18.341 1 60.18 ? O1 EDO 301 E 1 HETATM 3 C C2 EDO . . . X 6 16.104 53.553 -16.913 1 51.07 ? C2 EDO 301 E 1 HETATM 4 O O2 EDO . . . X 6 17.547 53.708 -16.88 1 58.14 ? O2 EDO 301 E 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #