data_5EU8 # _model_server_result.job_id 6mZ1jvxXkChf_ZUw1TnM1w _model_server_result.datetime_utc '2024-11-16 05:42:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eu8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 5EU8 # _exptl.entry_id 5EU8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EU8 _cell.length_a 112.261 _cell.length_b 112.261 _cell.length_c 102.102 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EU8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 149 A CYS 144 1_555 B C20 PJE 5 B PJE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.732 ? covale ? covale2 B C 02J 1 B 02J 1 1_555 B N ALA 2 B ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 B C LEU 4 B LEU 4 1_555 B N PJE 5 B PJE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale4 B C PJE 5 B PJE 5 1_555 B O 010 6 B 010 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? metalc ? metalc1 A NE2 HIS 46 A HIS 41 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc2 A ND1 HIS 168 A HIS 163 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc3 A OD1 ASP 191 A ASP 186 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc4 C ZN ZN . A ZN 401 1_555 E O HOH . A HOH 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 113 n n C1 C2 EDO sing 114 n n C1 H11 EDO sing 115 n n C1 H12 EDO sing 116 n n O1 HO1 EDO sing 117 n n C2 O2 EDO sing 118 n n C2 H21 EDO sing 119 n n C2 H22 EDO sing 120 n n O2 HO2 EDO sing 121 n n # _atom_sites.entry_id 5EU8 _atom_sites.fract_transf_matrix[1][1] 0.008908 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008908 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009794 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 401 1 ZN ZN . D 4 EDO A 1 402 1 EDO EDO . E 5 HOH A 1 501 92 HOH HOH . E 5 HOH A 2 502 93 HOH HOH . E 5 HOH A 3 503 35 HOH HOH . E 5 HOH A 4 504 108 HOH HOH . E 5 HOH A 5 505 14 HOH HOH . E 5 HOH A 6 506 3 HOH HOH . E 5 HOH A 7 507 87 HOH HOH . E 5 HOH A 8 508 45 HOH HOH . E 5 HOH A 9 509 24 HOH HOH . E 5 HOH A 10 510 104 HOH HOH . E 5 HOH A 11 511 49 HOH HOH . E 5 HOH A 12 512 95 HOH HOH . E 5 HOH A 13 513 85 HOH HOH . E 5 HOH A 14 514 107 HOH HOH . E 5 HOH A 15 515 15 HOH HOH . E 5 HOH A 16 516 10 HOH HOH . E 5 HOH A 17 517 102 HOH HOH . E 5 HOH A 18 518 86 HOH HOH . E 5 HOH A 19 519 83 HOH HOH . E 5 HOH A 20 520 64 HOH HOH . E 5 HOH A 21 521 58 HOH HOH . E 5 HOH A 22 522 105 HOH HOH . E 5 HOH A 23 523 41 HOH HOH . E 5 HOH A 24 524 79 HOH HOH . E 5 HOH A 25 525 23 HOH HOH . E 5 HOH A 26 526 37 HOH HOH . E 5 HOH A 27 527 12 HOH HOH . E 5 HOH A 28 528 74 HOH HOH . E 5 HOH A 29 529 88 HOH HOH . E 5 HOH A 30 530 47 HOH HOH . E 5 HOH A 31 531 18 HOH HOH . E 5 HOH A 32 532 5 HOH HOH . E 5 HOH A 33 533 21 HOH HOH . E 5 HOH A 34 534 101 HOH HOH . E 5 HOH A 35 535 46 HOH HOH . E 5 HOH A 36 536 51 HOH HOH . E 5 HOH A 37 537 7 HOH HOH . E 5 HOH A 38 538 33 HOH HOH . E 5 HOH A 39 539 26 HOH HOH . E 5 HOH A 40 540 52 HOH HOH . E 5 HOH A 41 541 73 HOH HOH . E 5 HOH A 42 542 6 HOH HOH . E 5 HOH A 43 543 25 HOH HOH . E 5 HOH A 44 544 20 HOH HOH . E 5 HOH A 45 545 109 HOH HOH . E 5 HOH A 46 546 50 HOH HOH . E 5 HOH A 47 547 27 HOH HOH . E 5 HOH A 48 548 19 HOH HOH . E 5 HOH A 49 549 8 HOH HOH . E 5 HOH A 50 550 2 HOH HOH . E 5 HOH A 51 551 11 HOH HOH . E 5 HOH A 52 552 1 HOH HOH . E 5 HOH A 53 553 22 HOH HOH . E 5 HOH A 54 554 55 HOH HOH . E 5 HOH A 55 555 99 HOH HOH . E 5 HOH A 56 556 30 HOH HOH . E 5 HOH A 57 557 13 HOH HOH . E 5 HOH A 58 558 36 HOH HOH . E 5 HOH A 59 559 32 HOH HOH . E 5 HOH A 60 560 70 HOH HOH . E 5 HOH A 61 561 75 HOH HOH . E 5 HOH A 62 562 62 HOH HOH . E 5 HOH A 63 563 39 HOH HOH . E 5 HOH A 64 564 94 HOH HOH . E 5 HOH A 65 565 80 HOH HOH . E 5 HOH A 66 566 65 HOH HOH . E 5 HOH A 67 567 54 HOH HOH . E 5 HOH A 68 568 16 HOH HOH . E 5 HOH A 69 569 63 HOH HOH . E 5 HOH A 70 570 40 HOH HOH . E 5 HOH A 71 571 4 HOH HOH . E 5 HOH A 72 572 77 HOH HOH . E 5 HOH A 73 573 53 HOH HOH . E 5 HOH A 74 574 66 HOH HOH . E 5 HOH A 75 575 91 HOH HOH . E 5 HOH A 76 576 90 HOH HOH . E 5 HOH A 77 577 29 HOH HOH . E 5 HOH A 78 578 9 HOH HOH . E 5 HOH A 79 579 76 HOH HOH . E 5 HOH A 80 580 17 HOH HOH . E 5 HOH A 81 581 42 HOH HOH . E 5 HOH A 82 582 69 HOH HOH . E 5 HOH A 83 583 97 HOH HOH . E 5 HOH A 84 584 71 HOH HOH . E 5 HOH A 85 585 34 HOH HOH . E 5 HOH A 86 586 48 HOH HOH . E 5 HOH A 87 587 103 HOH HOH . E 5 HOH A 88 588 89 HOH HOH . E 5 HOH A 89 589 106 HOH HOH . E 5 HOH A 90 590 61 HOH HOH . E 5 HOH A 91 591 44 HOH HOH . E 5 HOH A 92 592 56 HOH HOH . E 5 HOH A 93 593 96 HOH HOH . E 5 HOH A 94 594 57 HOH HOH . E 5 HOH A 95 595 78 HOH HOH . E 5 HOH A 96 596 28 HOH HOH . E 5 HOH A 97 597 72 HOH HOH . E 5 HOH A 98 598 43 HOH HOH . E 5 HOH A 99 599 67 HOH HOH . E 5 HOH A 100 600 38 HOH HOH . E 5 HOH A 101 601 59 HOH HOH . E 5 HOH A 102 602 60 HOH HOH . E 5 HOH A 103 603 110 HOH HOH . E 5 HOH A 104 604 98 HOH HOH . E 5 HOH A 105 605 100 HOH HOH . E 5 HOH A 106 606 31 HOH HOH . E 5 HOH A 107 607 82 HOH HOH . E 5 HOH A 108 608 84 HOH HOH . E 5 HOH A 109 609 81 HOH HOH . E 5 HOH A 110 610 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 -31.952 -20.933 -27.517 1 57.75 ? C1 EDO 402 A 1 HETATM 2 O O1 EDO . . . D 4 -33.384 -21.093 -27.486 1 52.73 ? O1 EDO 402 A 1 HETATM 3 C C2 EDO . . . D 4 -31.567 -19.524 -27.059 1 61.45 ? C2 EDO 402 A 1 HETATM 4 O O2 EDO . . . D 4 -30.324 -19.559 -26.333 1 55.91 ? O2 EDO 402 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #